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#Uncomment the "servlet" and "context-path" lines below to make the fhir endpoint available at /example/path/fhir instead of the default value of /fhir
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server:
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# servlet:
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# context-path: /example/path
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port: 8080
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#Adds the option to go to eg. http://localhost:8080/actuator/health for seeing the running configuration
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#see https://docs.spring.io/spring-boot/docs/current/reference/html/actuator.html#actuator.endpoints
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management:
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#The following configuration will enable the actuator endpoints at /actuator/health, /actuator/info, /actuator/prometheus, /actuator/metrics. For security purposes, only /actuator/health is enabled by default.
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endpoints:
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enabled-by-default: false
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web:
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exposure:
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include: 'health' # or e.g. 'info,health,prometheus,metrics' or '*' for all'
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endpoint:
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info:
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enabled: true
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metrics:
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enabled: true
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health:
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enabled: true
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probes:
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enabled: true
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group:
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liveness:
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include:
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- livenessState
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- readinessState
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prometheus:
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enabled: true
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prometheus:
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metrics:
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export:
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enabled: true
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spring:
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main:
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allow-circular-references: true
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flyway:
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enabled: false
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baselineOnMigrate: true
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fail-on-missing-locations: false
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datasource:
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#url: 'jdbc:h2:file:./target/database/h2'
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url: jdbc:h2:file:/app/h2-data/fhir;DB_CLOSE_DELAY=-1;AUTO_SERVER=TRUE
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#url: jdbc:h2:mem:test_mem
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username: sa
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password: null
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driverClassName: org.h2.Driver
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max-active: 15
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# database connection pool size
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hikari:
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maximum-pool-size: 10
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jpa:
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properties:
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hibernate.format_sql: false
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hibernate.show_sql: false
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#Hibernate dialect is automatically detected except Postgres and H2.
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#If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
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#If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgresDialect
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hibernate.dialect: ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
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# hibernate.hbm2ddl.auto: update
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# hibernate.jdbc.batch_size: 20
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# hibernate.cache.use_query_cache: false
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# hibernate.cache.use_second_level_cache: false
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# hibernate.cache.use_structured_entries: false
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# hibernate.cache.use_minimal_puts: false
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### These settings will enable fulltext search with lucene or elastic
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hibernate.search.enabled: false
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### lucene parameters
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# hibernate.search.backend.type: lucene
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# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer
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# hibernate.search.backend.directory.type: local-filesystem
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# hibernate.search.backend.directory.root: target/lucenefiles
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# hibernate.search.backend.lucene_version: lucene_current
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### elastic parameters ===> see also elasticsearch section below <===
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# hibernate.search.backend.type: elasticsearch
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# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer
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hapi:
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fhir:
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### This flag when enabled to true, will avail evaluate measure operations from CR Module.
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### Flag is false by default, can be passed as command line argument to override.
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cr:
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enabled: false
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caregaps:
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reporter: "default"
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section_author: "default"
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cql:
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use_embedded_libraries: true
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compiler:
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### These are low-level compiler options.
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### They are not typically needed by most users.
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# validate_units: true
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# verify_only: false
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# compatibility_level: "1.5"
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error_level: Info
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signature_level: All
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# analyze_data_requirements: false
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# collapse_data_requirements: false
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# translator_format: JSON
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# enable_date_range_optimization: true
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enable_annotations: true
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enable_locators: true
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enable_results_type: true
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enable_detailed_errors: true
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# disable_list_traversal: false
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# disable_list_demotion: false
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# enable_interval_demotion: false
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# enable_interval_promotion: false
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# disable_method_invocation: false
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# require_from_keyword: false
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# disable_default_model_info_load: false
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runtime:
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debug_logging_enabled: false
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# enable_validation: false
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# enable_expression_caching: true
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terminology:
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valueset_preexpansion_mode: REQUIRE # USE_IF_PRESENT, REQUIRE, IGNORE
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valueset_expansion_mode: PERFORM_NAIVE_EXPANSION # AUTO, USE_EXPANSION_OPERATION, PERFORM_NAIVE_EXPANSION
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valueset_membership_mode: USE_EXPANSION # AUTO, USE_VALIDATE_CODE_OPERATION, USE_EXPANSION
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code_lookup_mode: USE_VALIDATE_CODE_OPERATION # AUTO, USE_VALIDATE_CODE_OPERATION, USE_CODESYSTEM_URL
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data:
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search_parameter_mode: USE_SEARCH_PARAMETERS # AUTO, USE_SEARCH_PARAMETERS, FILTER_IN_MEMORY
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terminology_parameter_mode: FILTER_IN_MEMORY # AUTO, USE_VALUE_SET_URL, USE_INLINE_CODES, FILTER_IN_MEMORY
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profile_mode: DECLARED # ENFORCED, DECLARED, OPTIONAL, TRUST, OFF
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cdshooks:
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enabled: false
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clientIdHeaderName: client_id
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### This enables the swagger-ui at /fhir/swagger-ui/index.html as well as the /fhir/api-docs (see https://hapifhir.io/hapi-fhir/docs/server_plain/openapi.html)
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openapi_enabled: true
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### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5
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fhir_version: R4
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### Flag is false by default. This flag enables runtime installation of IG's.
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ig_runtime_upload_enabled: false
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### This flag when enabled to true, will avail evaluate measure operations from CR Module.
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### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers
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### to determine the FHIR server address
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# use_apache_address_strategy: false
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### forces the use of the https:// protocol for the returned server address.
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### alternatively, it may be set using the X-Forwarded-Proto header.
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# use_apache_address_strategy_https: false
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### enables the server to overwrite defaults on HTML, css, etc. under the url pattern of eg. /content/custom **
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### Folder with custom content MUST be named custom. If omitted then default content applies
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custom_content_path: ./custom
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### enables the server host custom content. If e.g. the value ./configs/app is supplied then the content
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### will be served under /web/app
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#app_content_path: ./configs/app
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### enable to set the Server URL
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# server_address: http://hapi.fhir.org/baseR4
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# defer_indexing_for_codesystems_of_size: 101
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### Flag is true by default. This flag filters resources during package installation, allowing only those resources with a valid status (e.g. active) to be installed.
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# validate_resource_status_for_package_upload: false
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# install_transitive_ig_dependencies: true
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#implementationguides:
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### example from registry (packages.fhir.org)
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# swiss:
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# name: swiss.mednet.fhir
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# version: 0.8.0
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# reloadExisting: false
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# installMode: STORE_AND_INSTALL
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# example not from registry
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# ips_1_0_0:
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# packageUrl: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz
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# name: hl7.fhir.uv.ips
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# version: 1.0.0
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# supported_resource_types:
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# - Patient
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# - Observation
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##################################################
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# Allowed Bundle Types for persistence (defaults are: COLLECTION,DOCUMENT,MESSAGE)
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##################################################
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# allowed_bundle_types: COLLECTION,DOCUMENT,MESSAGE,TRANSACTION,TRANSACTIONRESPONSE,BATCH,BATCHRESPONSE,HISTORY,SEARCHSET
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# allow_cascading_deletes: true
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# allow_contains_searches: true
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# allow_external_references: true
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# allow_multiple_delete: true
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# allow_override_default_search_params: true
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# auto_create_placeholder_reference_targets: false
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# mass_ingestion_mode_enabled: false
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### tells the server to automatically append the current version of the target resource to references at these paths
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# auto_version_reference_at_paths: Device.patient, Device.location, Device.parent, DeviceMetric.parent, DeviceMetric.source, Observation.device, Observation.subject
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# ips_enabled: false
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# default_encoding: JSON
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# default_pretty_print: true
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# default_page_size: 20
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# delete_expunge_enabled: true
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# enable_repository_validating_interceptor: true
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# enable_index_missing_fields: false
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# enable_index_of_type: true
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# enable_index_contained_resource: false
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# upliftedRefchains_enabled: true
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# resource_dbhistory_enabled: false
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### !!Extended Lucene/Elasticsearch Indexing is still a experimental feature, expect some features (e.g. _total=accurate) to not work as expected!!
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### more information here: https://hapifhir.io/hapi-fhir/docs/server_jpa/elastic.html
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advanced_lucene_indexing: false
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bulk_export_enabled: false
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bulk_import_enabled: false
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# language_search_parameter_enabled: true
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# enforce_referential_integrity_on_delete: false
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# This is an experimental feature, and does not fully support _total and other FHIR features.
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# enforce_referential_integrity_on_delete: false
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# enforce_referential_integrity_on_write: false
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# etag_support_enabled: true
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# expunge_enabled: true
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# client_id_strategy: ALPHANUMERIC
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# server_id_strategy: SEQUENTIAL_NUMERIC
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# fhirpath_interceptor_enabled: false
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# filter_search_enabled: true
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# graphql_enabled: true
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narrative_enabled: true
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mdm_enabled: false
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mdm_rules_json_location: "mdm-rules.json"
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## see: https://hapifhir.io/hapi-fhir/docs/interceptors/built_in_server_interceptors.html#jpa-server-retry-on-version-conflicts
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# userRequestRetryVersionConflictsInterceptorEnabled : false
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# local_base_urls:
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# - https://hapi.fhir.org/baseR4
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# pre_expand_value_sets: true
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# enable_task_pre_expand_value_sets: true
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# pre_expand_value_sets_default_count: 1000
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# pre_expand_value_sets_max_count: 1000
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# maximum_expansion_size: 1000
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logical_urls:
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- http://terminology.hl7.org/*
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- https://terminology.hl7.org/*
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- http://snomed.info/*
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- https://snomed.info/*
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- http://unitsofmeasure.org/*
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- https://unitsofmeasure.org/*
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- http://loinc.org/*
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- https://loinc.org/*
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# partitioning:
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# allow_references_across_partitions: false
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# partitioning_include_in_search_hashes: false
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# conditional_create_duplicate_identifiers_enabled: false
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cors:
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allow_Credentials: true
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# These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List-
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allowed_origin:
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- '*'
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# Search coordinator thread pool sizes
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search-coord-core-pool-size: 20
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search-coord-max-pool-size: 100
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search-coord-queue-capacity: 200
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# Search Prefetch Thresholds.
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# This setting sets the number of search results to prefetch. For example, if this list
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# is set to [100, 1000, -1] then the server will initially load 100 results and not
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# attempt to load more. If the user requests subsequent page(s) of results and goes
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# past 100 results, the system will load the next 900 (up to the following threshold of 1000).
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# The system will progressively work through these thresholds.
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# A threshold of -1 means to load all results. Note that if the final threshold is a
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# number other than -1, the system will never prefetch more than the given number.
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search_prefetch_thresholds: 13,503,2003,-1
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# comma-separated package names, will be @ComponentScan'ed by Spring to allow for creating custom Spring beans
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#custom-bean-packages:
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# comma-separated list of fully qualified interceptor classes.
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# classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages',
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# or will be instantiated via reflection using an no-arg contructor; then registered with the server
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#custom-interceptor-classes:
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# comma-separated list of fully qualified provider classes.
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# classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages',
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# or will be instantiated via reflection using an no-arg contructor; then registered with the server
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#custom-provider-classes:
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# Threadpool size for BATCH'ed GETs in a bundle.
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# bundle_batch_pool_size: 10
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# bundle_batch_pool_max_size: 50
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# logger:
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# error_format: 'ERROR - ${requestVerb} ${requestUrl}'
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# format: >-
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# Path[${servletPath}] Source[${requestHeader.x-forwarded-for}]
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# Operation[${operationType} ${operationName} ${idOrResourceName}]
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# UA[${requestHeader.user-agent}] Params[${requestParameters}]
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# ResponseEncoding[${responseEncodingNoDefault}]
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# log_exceptions: true
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# name: fhirtest.access
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# max_binary_size: 104857600
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# max_page_size: 200
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# retain_cached_searches_mins: 60
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# reuse_cached_search_results_millis: 60000
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tester:
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home:
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name: FHIRFLARE Tester
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server_address: http://localhost:8080/fhir
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refuse_to_fetch_third_party_urls: false
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fhir_version: R4
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global:
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name: Global Tester
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server_address: "http://hapi.fhir.org/baseR4"
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refuse_to_fetch_third_party_urls: false
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fhir_version: R4
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# validation:
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# requests_enabled: true
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# responses_enabled: true
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# binary_storage_enabled: true
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inline_resource_storage_below_size: 4000
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# bulk_export_enabled: true
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# subscription:
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# resthook_enabled: true
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# websocket_enabled: false
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# polling_interval_ms: 5000
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# immediately_queued: false
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# email:
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# from: some@test.com
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# host: google.com
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# port:
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# username:
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# password:
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# auth:
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# startTlsEnable:
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# startTlsRequired:
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# quitWait:
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# lastn_enabled: true
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# store_resource_in_lucene_index_enabled: true
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### This is configuration for normalized quantity search level default is 0
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### 0: NORMALIZED_QUANTITY_SEARCH_NOT_SUPPORTED - default
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### 1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED
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### 2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED
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# normalized_quantity_search_level: 2
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#elasticsearch:
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# debug:
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# pretty_print_json_log: false
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# refresh_after_write: false
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# enabled: false
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# password: SomePassword
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# required_index_status: YELLOW
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# rest_url: 'localhost:9200'
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# protocol: 'http'
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# schema_management_strategy: CREATE
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# username: SomeUsername
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