Sudo-JHare/FHIRFLARE-IG-Toolkit
Sudo-JHare/FHIRFLARE-IG-Toolkit
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fix context relative path.
This commit is contained in:
Joshua Hare 2025-08-12 19:28:47 +10:00
parent 189ba1d18c
commit 5a6f2072d7
1 changed files with 16 additions and 13 deletions
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29
app.py
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@ -5,6 +5,7 @@ CURRENT_DIR = os.path.abspath(os.path.dirname(__file__))
# Introduce app_dir variable that can be overridden by environment
app_dir = os.environ.get('APP_DIR', CURRENT_DIR)
sys.path.append(CURRENT_DIR)
#sys.path.append(os.path.abspath(os.path.dirname(__file__)))
import datetime
import shutil
import queue
@ -2402,19 +2403,21 @@ def api_retrieve_bundles():
output_zip = os.path.join(temp_dir, zip_filename)
def generate():
try:
yield from services.retrieve_bundles(
fhir_server_url=fhir_server_url,
resources=resources,
output_zip=output_zip,
validate_references=validate_references,
fetch_reference_bundles=fetch_reference_bundles,
auth_type=auth_type,
auth_token=auth_token
)
except Exception as e:
logger.error(f"Error in retrieve_bundles: {e}", exc_info=True)
yield json.dumps({"type": "error", "message": f"Unexpected error: {str(e)}"}) + "\n"
# Push the application context manually for the generator's lifetime
with app.app_context():
try:
yield from services.retrieve_bundles(
fhir_server_url=fhir_server_url,
resources=resources,
output_zip=output_zip,
validate_references=validate_references,
fetch_reference_bundles=fetch_reference_bundles,
auth_type=auth_type,
auth_token=auth_token
)
except Exception as e:
logger.error(f"Error in retrieve_bundles: {e}", exc_info=True)
yield json.dumps({"type": "error", "message": f"Unexpected error: {str(e)}"}) + "\n"
response = Response(generate(), mimetype='application/x-ndjson')
response.headers['X-Zip-Path'] = os.path.join('/tmp', zip_filename)