From 5d110da4194c0d2b24d352e222c99a0b0517d981 Mon Sep 17 00:00:00 2001 From: Sudo-JHare Date: Thu, 17 Apr 2025 17:56:12 +1000 Subject: [PATCH] Create application.yaml --- .../target/classes/application.yaml | 342 ++++++++++++++++++ 1 file changed, 342 insertions(+) create mode 100644 hapi-fhir-Setup/target/classes/application.yaml diff --git a/hapi-fhir-Setup/target/classes/application.yaml b/hapi-fhir-Setup/target/classes/application.yaml new file mode 100644 index 0000000..a79d07e --- /dev/null +++ b/hapi-fhir-Setup/target/classes/application.yaml @@ -0,0 +1,342 @@ +#Uncomment the "servlet" and "context-path" lines below to make the fhir endpoint available at /example/path/fhir instead of the default value of /fhir +server: + # servlet: + # context-path: /example/path + port: 8080 +#Adds the option to go to eg. http://localhost:8080/actuator/health for seeing the running configuration +#see https://docs.spring.io/spring-boot/docs/current/reference/html/actuator.html#actuator.endpoints +management: + #The following configuration will enable the actuator endpoints at /actuator/health, /actuator/info, /actuator/prometheus, /actuator/metrics. For security purposes, only /actuator/health is enabled by default. + endpoints: + enabled-by-default: false + web: + exposure: + include: 'health' # or e.g. 'info,health,prometheus,metrics' or '*' for all' + endpoint: + info: + enabled: true + metrics: + enabled: true + health: + enabled: true + probes: + enabled: true + group: + liveness: + include: + - livenessState + - readinessState + prometheus: + enabled: true + prometheus: + metrics: + export: + enabled: true +spring: + main: + allow-circular-references: true + flyway: + enabled: false + baselineOnMigrate: true + fail-on-missing-locations: false + datasource: + #url: 'jdbc:h2:file:./target/database/h2' + url: jdbc:h2:file:/app/h2-data/fhir;DB_CLOSE_DELAY=-1;AUTO_SERVER=TRUE + #url: jdbc:h2:mem:test_mem + username: sa + password: null + driverClassName: org.h2.Driver + max-active: 15 + + # database connection pool size + hikari: + maximum-pool-size: 10 + jpa: + properties: + hibernate.format_sql: false + hibernate.show_sql: false + + #Hibernate dialect is automatically detected except Postgres and H2. + #If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect + #If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgresDialect + hibernate.dialect: ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect + # hibernate.hbm2ddl.auto: update + # hibernate.jdbc.batch_size: 20 + # hibernate.cache.use_query_cache: false + # hibernate.cache.use_second_level_cache: false + # hibernate.cache.use_structured_entries: false + # hibernate.cache.use_minimal_puts: false + + ### These settings will enable fulltext search with lucene or elastic + hibernate.search.enabled: false + ### lucene parameters +# hibernate.search.backend.type: lucene +# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer +# hibernate.search.backend.directory.type: local-filesystem +# hibernate.search.backend.directory.root: target/lucenefiles +# hibernate.search.backend.lucene_version: lucene_current + ### elastic parameters ===> see also elasticsearch section below <=== +# hibernate.search.backend.type: elasticsearch +# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer +hapi: + fhir: + ### This flag when enabled to true, will avail evaluate measure operations from CR Module. + ### Flag is false by default, can be passed as command line argument to override. + cr: + enabled: false + caregaps: + reporter: "default" + section_author: "default" + cql: + use_embedded_libraries: true + compiler: + ### These are low-level compiler options. + ### They are not typically needed by most users. + # validate_units: true + # verify_only: false + # compatibility_level: "1.5" + error_level: Info + signature_level: All + # analyze_data_requirements: false + # collapse_data_requirements: false + # translator_format: JSON + # enable_date_range_optimization: true + enable_annotations: true + enable_locators: true + enable_results_type: true + enable_detailed_errors: true + # disable_list_traversal: false + # disable_list_demotion: false + # enable_interval_demotion: false + # enable_interval_promotion: false + # disable_method_invocation: false + # require_from_keyword: false + # disable_default_model_info_load: false + runtime: + debug_logging_enabled: false + # enable_validation: false + # enable_expression_caching: true + terminology: + valueset_preexpansion_mode: REQUIRE # USE_IF_PRESENT, REQUIRE, IGNORE + valueset_expansion_mode: PERFORM_NAIVE_EXPANSION # AUTO, USE_EXPANSION_OPERATION, PERFORM_NAIVE_EXPANSION + valueset_membership_mode: USE_EXPANSION # AUTO, USE_VALIDATE_CODE_OPERATION, USE_EXPANSION + code_lookup_mode: USE_VALIDATE_CODE_OPERATION # AUTO, USE_VALIDATE_CODE_OPERATION, USE_CODESYSTEM_URL + data: + search_parameter_mode: USE_SEARCH_PARAMETERS # AUTO, USE_SEARCH_PARAMETERS, FILTER_IN_MEMORY + terminology_parameter_mode: FILTER_IN_MEMORY # AUTO, USE_VALUE_SET_URL, USE_INLINE_CODES, FILTER_IN_MEMORY + profile_mode: DECLARED # ENFORCED, DECLARED, OPTIONAL, TRUST, OFF + + cdshooks: + enabled: false + clientIdHeaderName: client_id + + ### This enables the swagger-ui at /fhir/swagger-ui/index.html as well as the /fhir/api-docs (see https://hapifhir.io/hapi-fhir/docs/server_plain/openapi.html) + openapi_enabled: true + ### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5 + fhir_version: R4 + ### Flag is false by default. This flag enables runtime installation of IG's. + ig_runtime_upload_enabled: false + ### This flag when enabled to true, will avail evaluate measure operations from CR Module. + + ### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers + ### to determine the FHIR server address + # use_apache_address_strategy: false + ### forces the use of the https:// protocol for the returned server address. + ### alternatively, it may be set using the X-Forwarded-Proto header. + # use_apache_address_strategy_https: false + ### enables the server to overwrite defaults on HTML, css, etc. under the url pattern of eg. /content/custom ** + ### Folder with custom content MUST be named custom. If omitted then default content applies + custom_content_path: ./custom + ### enables the server host custom content. If e.g. the value ./configs/app is supplied then the content + ### will be served under /web/app + #app_content_path: ./configs/app + ### enable to set the Server URL + # server_address: http://hapi.fhir.org/baseR4 + # defer_indexing_for_codesystems_of_size: 101 + ### Flag is true by default. This flag filters resources during package installation, allowing only those resources with a valid status (e.g. active) to be installed. + # validate_resource_status_for_package_upload: false + # install_transitive_ig_dependencies: true + #implementationguides: + ### example from registry (packages.fhir.org) + # swiss: + # name: swiss.mednet.fhir + # version: 0.8.0 + # reloadExisting: false + # installMode: STORE_AND_INSTALL + # example not from registry + # ips_1_0_0: + # packageUrl: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz + # name: hl7.fhir.uv.ips + # version: 1.0.0 + # supported_resource_types: + # - Patient + # - Observation + ################################################## + # Allowed Bundle Types for persistence (defaults are: COLLECTION,DOCUMENT,MESSAGE) + ################################################## + # allowed_bundle_types: COLLECTION,DOCUMENT,MESSAGE,TRANSACTION,TRANSACTIONRESPONSE,BATCH,BATCHRESPONSE,HISTORY,SEARCHSET + # allow_cascading_deletes: true + # allow_contains_searches: true + # allow_external_references: true + # allow_multiple_delete: true + # allow_override_default_search_params: true + # auto_create_placeholder_reference_targets: false + # mass_ingestion_mode_enabled: false + ### tells the server to automatically append the current version of the target resource to references at these paths + # auto_version_reference_at_paths: Device.patient, Device.location, Device.parent, DeviceMetric.parent, DeviceMetric.source, Observation.device, Observation.subject + # ips_enabled: false + # default_encoding: JSON + # default_pretty_print: true + # default_page_size: 20 + # delete_expunge_enabled: true + # enable_repository_validating_interceptor: true + # enable_index_missing_fields: false + # enable_index_of_type: true + # enable_index_contained_resource: false + # upliftedRefchains_enabled: true + # resource_dbhistory_enabled: false + ### !!Extended Lucene/Elasticsearch Indexing is still a experimental feature, expect some features (e.g. _total=accurate) to not work as expected!! + ### more information here: https://hapifhir.io/hapi-fhir/docs/server_jpa/elastic.html + advanced_lucene_indexing: false + bulk_export_enabled: false + bulk_import_enabled: false + # language_search_parameter_enabled: true + # enforce_referential_integrity_on_delete: false + # This is an experimental feature, and does not fully support _total and other FHIR features. + # enforce_referential_integrity_on_delete: false + # enforce_referential_integrity_on_write: false + # etag_support_enabled: true + # expunge_enabled: true + # client_id_strategy: ALPHANUMERIC + # server_id_strategy: SEQUENTIAL_NUMERIC + # fhirpath_interceptor_enabled: false + # filter_search_enabled: true + # graphql_enabled: true + narrative_enabled: true + mdm_enabled: false + mdm_rules_json_location: "mdm-rules.json" + ## see: https://hapifhir.io/hapi-fhir/docs/interceptors/built_in_server_interceptors.html#jpa-server-retry-on-version-conflicts + # userRequestRetryVersionConflictsInterceptorEnabled : false + # local_base_urls: + # - https://hapi.fhir.org/baseR4 + # pre_expand_value_sets: true + # enable_task_pre_expand_value_sets: true + # pre_expand_value_sets_default_count: 1000 + # pre_expand_value_sets_max_count: 1000 + # maximum_expansion_size: 1000 + + logical_urls: + - http://terminology.hl7.org/* + - https://terminology.hl7.org/* + - http://snomed.info/* + - https://snomed.info/* + - http://unitsofmeasure.org/* + - https://unitsofmeasure.org/* + - http://loinc.org/* + - https://loinc.org/* + # partitioning: + # allow_references_across_partitions: false + # partitioning_include_in_search_hashes: false + # conditional_create_duplicate_identifiers_enabled: false + cors: + allow_Credentials: true + # These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List- + allowed_origin: + - '*' + + # Search coordinator thread pool sizes + search-coord-core-pool-size: 20 + search-coord-max-pool-size: 100 + search-coord-queue-capacity: 200 + + # Search Prefetch Thresholds. + + # This setting sets the number of search results to prefetch. For example, if this list + # is set to [100, 1000, -1] then the server will initially load 100 results and not + # attempt to load more. If the user requests subsequent page(s) of results and goes + # past 100 results, the system will load the next 900 (up to the following threshold of 1000). + # The system will progressively work through these thresholds. + # A threshold of -1 means to load all results. Note that if the final threshold is a + # number other than -1, the system will never prefetch more than the given number. + search_prefetch_thresholds: 13,503,2003,-1 + + # comma-separated package names, will be @ComponentScan'ed by Spring to allow for creating custom Spring beans + #custom-bean-packages: + + # comma-separated list of fully qualified interceptor classes. + # classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages', + # or will be instantiated via reflection using an no-arg contructor; then registered with the server + #custom-interceptor-classes: + + # comma-separated list of fully qualified provider classes. + # classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages', + # or will be instantiated via reflection using an no-arg contructor; then registered with the server + #custom-provider-classes: + + # Threadpool size for BATCH'ed GETs in a bundle. + # bundle_batch_pool_size: 10 + # bundle_batch_pool_max_size: 50 + + # logger: + # error_format: 'ERROR - ${requestVerb} ${requestUrl}' + # format: >- + # Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] + # Operation[${operationType} ${operationName} ${idOrResourceName}] + # UA[${requestHeader.user-agent}] Params[${requestParameters}] + # ResponseEncoding[${responseEncodingNoDefault}] + # log_exceptions: true + # name: fhirtest.access + # max_binary_size: 104857600 + # max_page_size: 200 + # retain_cached_searches_mins: 60 + # reuse_cached_search_results_millis: 60000 + tester: + home: + name: FHIRFLARE Tester + server_address: http://localhost:8080/fhir + refuse_to_fetch_third_party_urls: false + fhir_version: R4 + global: + name: Global Tester + server_address: "http://hapi.fhir.org/baseR4" + refuse_to_fetch_third_party_urls: false + fhir_version: R4 + # validation: + # requests_enabled: true + # responses_enabled: true + # binary_storage_enabled: true + inline_resource_storage_below_size: 4000 +# bulk_export_enabled: true +# subscription: +# resthook_enabled: true +# websocket_enabled: false +# polling_interval_ms: 5000 +# immediately_queued: false +# email: +# from: some@test.com +# host: google.com +# port: +# username: +# password: +# auth: +# startTlsEnable: +# startTlsRequired: +# quitWait: +# lastn_enabled: true +# store_resource_in_lucene_index_enabled: true +### This is configuration for normalized quantity search level default is 0 +### 0: NORMALIZED_QUANTITY_SEARCH_NOT_SUPPORTED - default +### 1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED +### 2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED +# normalized_quantity_search_level: 2 +#elasticsearch: +# debug: +# pretty_print_json_log: false +# refresh_after_write: false +# enabled: false +# password: SomePassword +# required_index_status: YELLOW +# rest_url: 'localhost:9200' +# protocol: 'http' +# schema_management_strategy: CREATE +# username: SomeUsername