mirror of
https://github.com/Sudo-JHare/FHIRFLARE-IG-Toolkit.git
synced 2025-11-05 13:35:15 +00:00
remove related build artifacts
This commit is contained in:
Jörn Guy Süß
parent
928a331a40
commit
d662e8509a
@ -1,211 +0,0 @@
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@echo off
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setlocal enabledelayedexpansion
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REM --- Configuration ---
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set REPO_URL=https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git
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set CLONE_DIR=hapi-fhir-jpaserver
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set SOURCE_CONFIG_DIR=hapi-fhir-setup
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set CONFIG_FILE=application.yaml
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REM --- Define Paths ---
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set SOURCE_CONFIG_PATH=..\%SOURCE_CONFIG_DIR%\target\classes\%CONFIG_FILE%
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set DEST_CONFIG_PATH=%CLONE_DIR%\target\classes\%CONFIG_FILE%
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|
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REM === CORRECTED: Prompt for Version ===
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:GetModeChoice
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SET "APP_MODE=" REM Clear the variable first
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echo Select Installation Mode:
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echo 1. Standalone (Includes local HAPI FHIR Server - Requires Git & Maven)
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echo 2. Lite (Excludes local HAPI FHIR Server - No Git/Maven needed)
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CHOICE /C 12 /N /M "Enter your choice (1 or 2):"
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IF ERRORLEVEL 2 (
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SET APP_MODE=lite
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goto :ModeSet
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)
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IF ERRORLEVEL 1 (
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SET APP_MODE=standalone
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goto :ModeSet
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)
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REM If somehow neither was chosen (e.g., Ctrl+C), loop back
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echo Invalid input. Please try again.
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goto :GetModeChoice
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:ModeSet
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IF "%APP_MODE%"=="" (
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echo Invalid choice detected after checks. Exiting.
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goto :eof
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)
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echo Selected Mode: %APP_MODE%
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echo.
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REM === END CORRECTION ===
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REM === Conditionally Execute HAPI Setup ===
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IF "%APP_MODE%"=="standalone" (
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echo Running Standalone setup including HAPI FHIR...
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echo.
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REM --- Step 0: Clean up previous clone (optional) ---
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echo Checking for existing directory: %CLONE_DIR%
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if exist "%CLONE_DIR%" (
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echo Found existing directory, removing it...
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rmdir /s /q "%CLONE_DIR%"
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if errorlevel 1 (
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echo ERROR: Failed to remove existing directory: %CLONE_DIR%
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goto :error
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)
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echo Existing directory removed.
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) else (
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echo Directory does not exist, proceeding with clone.
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)
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echo.
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REM --- Step 1: Clone the HAPI FHIR server repository ---
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echo Cloning repository: %REPO_URL% into %CLONE_DIR%...
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git clone "%REPO_URL%" "%CLONE_DIR%"
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if errorlevel 1 (
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echo ERROR: Failed to clone repository. Check Git installation and network connection.
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goto :error
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)
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echo Repository cloned successfully.
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echo.
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REM --- Step 2: Navigate into the cloned directory ---
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echo Changing directory to %CLONE_DIR%...
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cd "%CLONE_DIR%"
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if errorlevel 1 (
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echo ERROR: Failed to change directory to %CLONE_DIR%.
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goto :error
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)
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echo Current directory: %CD%
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echo.
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REM --- Step 3: Build the HAPI server using Maven ---
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echo ===> "Starting Maven build (Step 3)...""
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cmd /c "mvn clean package -DskipTests=true -Pboot"
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echo ===> Maven command finished. Checking error level...
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if errorlevel 1 (
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echo ERROR: Maven build failed or cmd /c failed
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cd ..
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goto :error
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)
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echo Maven build completed successfully. ErrorLevel: %errorlevel%
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echo.
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REM --- Step 4: Copy the configuration file ---
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echo ===> "Starting file copy (Step 4)..."
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echo Copying configuration file...
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echo Source: %SOURCE_CONFIG_PATH%
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echo Destination: target\classes\%CONFIG_FILE%
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xcopy "%SOURCE_CONFIG_PATH%" "target\classes\" /Y /I
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echo ===> xcopy command finished. Checking error level...
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if errorlevel 1 (
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echo WARNING: Failed to copy configuration file. Check if the source file exists.
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echo The script will continue, but the server might use default configuration.
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) else (
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echo Configuration file copied successfully. ErrorLevel: %errorlevel%
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)
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echo.
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REM --- Step 5: Navigate back to the parent directory ---
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echo ===> "Changing directory back (Step 5)..."
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cd ..
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if errorlevel 1 (
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echo ERROR: Failed to change back to the parent directory. ErrorLevel: %errorlevel%
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goto :error
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)
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echo Current directory: %CD%
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echo.
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) ELSE (
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echo Running Lite setup, skipping HAPI FHIR build...
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REM Ensure the hapi-fhir-jpaserver directory doesn't exist or is empty if Lite mode is chosen after a standalone attempt
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if exist "%CLONE_DIR%" (
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echo Found existing HAPI directory in Lite mode. Removing it to avoid build issues...
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rmdir /s /q "%CLONE_DIR%"
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)
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REM Create empty target directories expected by Dockerfile COPY, even if not used
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mkdir "%CLONE_DIR%\target\classes" 2> nul
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mkdir "%CLONE_DIR%\custom" 2> nul
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REM Create a placeholder empty WAR file to satisfy Dockerfile COPY
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echo. > "%CLONE_DIR%\target\ROOT.war"
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echo. > "%CLONE_DIR%\target\classes\application.yaml"
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echo Placeholder files created for Lite mode build.
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echo.
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)
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REM === Modify docker-compose.yml to set APP_MODE ===
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echo Updating docker-compose.yml with APP_MODE=%APP_MODE%...
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(
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echo version: '3.8'
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echo services:
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echo fhirflare:
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echo build:
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echo context: .
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echo dockerfile: Dockerfile
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echo ports:
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echo - "5000:5000"
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echo - "8080:8080" # Keep port exposed, even if Tomcat isn't running useful stuff in Lite
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echo volumes:
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echo - ./instance:/app/instance
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echo - ./static/uploads:/app/static/uploads
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echo - ./instance/hapi-h2-data/:/app/h2-data # Keep volume mounts consistent
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echo - ./logs:/app/logs
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echo environment:
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echo - FLASK_APP=app.py
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echo - FLASK_ENV=development
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echo - NODE_PATH=/usr/lib/node_modules
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echo - APP_MODE=%APP_MODE%
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echo - APP_BASE_URL=http://localhost:5000
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echo - HAPI_FHIR_URL=http://localhost:8080/fhir
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echo command: supervisord -c /etc/supervisord.conf
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) > docker-compose.yml.tmp
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REM Check if docker-compose.yml.tmp was created successfully
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if not exist docker-compose.yml.tmp (
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echo ERROR: Failed to create temporary docker-compose file.
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goto :error
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)
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||||||
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||||||
REM Replace the original docker-compose.yml
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del docker-compose.yml /Q > nul 2>&1
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ren docker-compose.yml.tmp docker-compose.yml
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echo docker-compose.yml updated successfully.
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echo.
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|
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REM --- Step 6: Build Docker images ---
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echo ===> Starting Docker build (Step 6)...
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docker-compose build --no-cache
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if errorlevel 1 (
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echo ERROR: Docker Compose build failed. Check Docker installation and docker-compose.yml file. ErrorLevel: %errorlevel%
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||||||
goto :error
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)
|
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||||||
echo Docker images built successfully. ErrorLevel: %errorlevel%
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echo.
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|
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||||||
REM --- Step 7: Start Docker containers ---
|
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||||||
echo ===> Starting Docker containers (Step 7)...
|
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docker-compose up -d
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|
||||||
if errorlevel 1 (
|
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||||||
echo ERROR: Docker Compose up failed. Check Docker installation and container configurations. ErrorLevel: %errorlevel%
|
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||||||
goto :error
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)
|
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||||||
echo Docker containers started successfully. ErrorLevel: %errorlevel%
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||||||
echo.
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||||||
|
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||||||
echo ====================================
|
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||||||
echo Script finished successfully! (Mode: %APP_MODE%)
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||||||
echo ====================================
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||||||
goto :eof
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|
||||||
|
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||||||
:error
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||||||
echo ------------------------------------
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echo An error occurred. Script aborted.
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||||||
echo ------------------------------------
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||||||
pause
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|
||||||
exit /b 1
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|
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||||||
:eof
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echo Script execution finished.
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||||||
pause
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||||||
147
build_and_run.sh
147
build_and_run.sh
@ -1,147 +0,0 @@
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#!/bin/bash
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||||||
set -e
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|
||||||
|
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||||||
# --- Configuration ---
|
|
||||||
REPO_URL="https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git"
|
|
||||||
CLONE_DIR="hapi-fhir-jpaserver"
|
|
||||||
SOURCE_CONFIG_DIR="hapi-fhir-setup"
|
|
||||||
CONFIG_FILE="application.yaml"
|
|
||||||
|
|
||||||
# --- Define Paths ---
|
|
||||||
SOURCE_CONFIG_PATH="../$SOURCE_CONFIG_DIR/target/classes/$CONFIG_FILE"
|
|
||||||
DEST_CONFIG_PATH="$CLONE_DIR/target/classes/$CONFIG_FILE"
|
|
||||||
|
|
||||||
# === Prompt for Version ===
|
|
||||||
while true; do
|
|
||||||
echo "Select Installation Mode:"
|
|
||||||
echo "1. Standalone (Includes local HAPI FHIR Server - Requires Git & Maven)"
|
|
||||||
echo "2. Lite (Excludes local HAPI FHIR Server - No Git/Maven needed)"
|
|
||||||
read -p "Enter your choice (1 or 2): " choice
|
|
||||||
case $choice in
|
|
||||||
1)
|
|
||||||
APP_MODE="standalone"
|
|
||||||
break
|
|
||||||
;;
|
|
||||||
2)
|
|
||||||
APP_MODE="lite"
|
|
||||||
break
|
|
||||||
;;
|
|
||||||
*)
|
|
||||||
echo "Invalid input. Please try again."
|
|
||||||
;;
|
|
||||||
esac
|
|
||||||
done
|
|
||||||
|
|
||||||
echo "Selected Mode: $APP_MODE"
|
|
||||||
echo
|
|
||||||
|
|
||||||
# === Conditionally Execute HAPI Setup ===
|
|
||||||
if [ "$APP_MODE" = "standalone" ]; then
|
|
||||||
echo "Running Standalone setup including HAPI FHIR..."
|
|
||||||
echo
|
|
||||||
|
|
||||||
# Step 0: Clean up previous clone (optional)
|
|
||||||
if [ -d "$CLONE_DIR" ]; then
|
|
||||||
echo "Found existing directory, removing it..."
|
|
||||||
rm -rf "$CLONE_DIR"
|
|
||||||
echo "Existing directory removed."
|
|
||||||
else
|
|
||||||
echo "Directory does not exist, proceeding with clone."
|
|
||||||
fi
|
|
||||||
echo
|
|
||||||
|
|
||||||
# Step 1: Clone the HAPI FHIR server repository
|
|
||||||
echo "Cloning repository: $REPO_URL into $CLONE_DIR..."
|
|
||||||
git clone "$REPO_URL" "$CLONE_DIR"
|
|
||||||
echo "Repository cloned successfully."
|
|
||||||
echo
|
|
||||||
|
|
||||||
# Step 2: Navigate into the cloned directory
|
|
||||||
cd "$CLONE_DIR"
|
|
||||||
echo "Current directory: $(pwd)"
|
|
||||||
echo
|
|
||||||
|
|
||||||
# Step 3: Build the HAPI server using Maven
|
|
||||||
echo "===> Starting Maven build (Step 3)..."
|
|
||||||
mvn clean package -DskipTests=true -Pboot
|
|
||||||
echo "Maven build completed successfully."
|
|
||||||
echo
|
|
||||||
|
|
||||||
# Step 4: Copy the configuration file
|
|
||||||
echo "===> Starting file copy (Step 4)..."
|
|
||||||
echo "Copying configuration file..."
|
|
||||||
echo "Source: $SOURCE_CONFIG_PATH"
|
|
||||||
echo "Destination: target/classes/$CONFIG_FILE"
|
|
||||||
cp "$SOURCE_CONFIG_PATH" "target/classes/" || echo "WARNING: Failed to copy configuration file. The server might use default configuration."
|
|
||||||
echo "Configuration file copy step finished."
|
|
||||||
echo
|
|
||||||
|
|
||||||
# Step 5: Navigate back to the parent directory
|
|
||||||
cd ..
|
|
||||||
echo "Current directory: $(pwd)"
|
|
||||||
echo
|
|
||||||
else
|
|
||||||
echo "Running Lite setup, skipping HAPI FHIR build..."
|
|
||||||
# Ensure the hapi-fhir-jpaserver directory doesn't exist or is empty if Lite mode is chosen after a standalone attempt
|
|
||||||
if [ -d "$CLONE_DIR" ]; then
|
|
||||||
echo "Found existing HAPI directory in Lite mode. Removing it to avoid build issues..."
|
|
||||||
rm -rf "$CLONE_DIR"
|
|
||||||
fi
|
|
||||||
# Create empty target directories expected by Dockerfile COPY, even if not used
|
|
||||||
mkdir -p "$CLONE_DIR/target/classes"
|
|
||||||
mkdir -p "$CLONE_DIR/custom"
|
|
||||||
# Create a placeholder empty WAR file to satisfy Dockerfile COPY
|
|
||||||
touch "$CLONE_DIR/target/ROOT.war"
|
|
||||||
touch "$CLONE_DIR/target/classes/application.yaml"
|
|
||||||
echo "Placeholder files created for Lite mode build."
|
|
||||||
echo
|
|
||||||
fi
|
|
||||||
|
|
||||||
# === Modify docker-compose.yml to set APP_MODE ===
|
|
||||||
echo "Updating docker-compose.yml with APP_MODE=$APP_MODE..."
|
|
||||||
cat <<EOF > docker-compose.yml.tmp
|
|
||||||
version: '3.8'
|
|
||||||
services:
|
|
||||||
fhirflare:
|
|
||||||
build:
|
|
||||||
context: .
|
|
||||||
dockerfile: Dockerfile
|
|
||||||
ports:
|
|
||||||
- "5000:5000"
|
|
||||||
- "8080:8080"
|
|
||||||
volumes:
|
|
||||||
- ./instance:/app/instance
|
|
||||||
- ./static/uploads:/app/static/uploads
|
|
||||||
- ./instance/hapi-h2-data/:/app/h2-data
|
|
||||||
- ./logs:/app/logs
|
|
||||||
environment:
|
|
||||||
- FLASK_APP=app.py
|
|
||||||
- FLASK_ENV=development
|
|
||||||
- NODE_PATH=/usr/lib/node_modules
|
|
||||||
- APP_MODE=$APP_MODE
|
|
||||||
- APP_BASE_URL=http://localhost:5000
|
|
||||||
- HAPI_FHIR_URL=http://localhost:8080/fhir
|
|
||||||
command: supervisord -c /etc/supervisord.conf
|
|
||||||
EOF
|
|
||||||
|
|
||||||
# Replace the original docker-compose.yml
|
|
||||||
mv docker-compose.yml.tmp docker-compose.yml
|
|
||||||
|
|
||||||
echo "docker-compose.yml updated successfully."
|
|
||||||
echo
|
|
||||||
|
|
||||||
# --- Step 6: Build Docker images ---
|
|
||||||
echo "===> Starting Docker build (Step 6)..."
|
|
||||||
docker compose build --no-cache
|
|
||||||
echo "Docker images built successfully."
|
|
||||||
echo
|
|
||||||
|
|
||||||
# --- Step 7: Start Docker containers ---
|
|
||||||
echo "===> Starting Docker containers (Step 7)..."
|
|
||||||
docker compose up -d
|
|
||||||
echo "Docker containers started successfully."
|
|
||||||
echo
|
|
||||||
|
|
||||||
echo "===================================="
|
|
||||||
echo "Script finished successfully! (Mode: $APP_MODE)"
|
|
||||||
echo "===================================="
|
|
||||||
@ -1,111 +0,0 @@
|
|||||||
# Application Build and Run Guide - MANUAL STEPS
|
|
||||||
|
|
||||||
This guide outlines the steps to set up, build, and run the application, including the HAPI FHIR server component and the rest of the application managed via Docker Compose.
|
|
||||||
|
|
||||||
## Prerequisites
|
|
||||||
|
|
||||||
Before you begin, ensure you have the following installed on your system:
|
|
||||||
|
|
||||||
* [Git](https://git-scm.com/)
|
|
||||||
* [Maven](https://maven.apache.org/)
|
|
||||||
* [Java Development Kit (JDK)](https://www.oracle.com/java/technologies/downloads/) (Ensure compatibility with the HAPI FHIR version)
|
|
||||||
* [Docker](https://www.docker.com/products/docker-desktop/)
|
|
||||||
* [Docker Compose](https://docs.docker.com/compose/install/) (Often included with Docker Desktop)
|
|
||||||
|
|
||||||
## Setup and Build
|
|
||||||
|
|
||||||
Follow these steps to clone the necessary repository and build the components.
|
|
||||||
|
|
||||||
### 1. Clone and Build the HAPI FHIR Server
|
|
||||||
|
|
||||||
First, clone the HAPI FHIR JPA Server Starter project and build the server application.
|
|
||||||
|
|
||||||
|
|
||||||
# Step 1: Clone the repository
|
|
||||||
git clone https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git hapi-fhir-jpaserver hapi-fhir-jpaserver
|
|
||||||
|
|
||||||
# Navigate into the cloned directory
|
|
||||||
cd hapi-fhir-jpaserver
|
|
||||||
|
|
||||||
copy the folder from hapi-fhir-setup/target/classes/application.yaml to the hapi-fhir-jpaserver/target/classes/application.yaml folder created above
|
|
||||||
|
|
||||||
# Step 2: Build the HAPI server package (skipping tests, using 'boot' profile)
|
|
||||||
# This creates the runnable WAR file in the 'target/' directory
|
|
||||||
mvn clean package -DskipTests=true -Pboot
|
|
||||||
|
|
||||||
# Return to the parent directory (or your project root)
|
|
||||||
cd ..
|
|
||||||
2. Build the Rest of the Application (Docker)
|
|
||||||
Next, build the Docker images for the remaining parts of the application as defined in your docker-compose.yml file. Run this command from the root directory where your docker-compose.yml file is located.
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
# Step 3: Build Docker images without using cache
|
|
||||||
docker-compose build --no-cache
|
|
||||||
Running the Application
|
|
||||||
Option A: Running the Full Application (Recommended)
|
|
||||||
Use Docker Compose to start all services, including (presumably) the HAPI FHIR server if it's configured in your docker-compose.yml. Run this from the root directory containing your docker-compose.yml.
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
# Step 4: Start all services defined in docker-compose.yml in detached mode
|
|
||||||
docker-compose up -d
|
|
||||||
Option B: Running the HAPI FHIR Server Standalone (Debugging Only)
|
|
||||||
This method runs only the HAPI FHIR server directly using the built WAR file. Use this primarily for debugging the server in isolation.
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
# Navigate into the HAPI server directory where you built it
|
|
||||||
cd hapi-fhir-jpaserver
|
|
||||||
|
|
||||||
# Run the WAR file directly using Java
|
|
||||||
java -jar target/ROOT.war
|
|
||||||
|
|
||||||
# Note: You might need to configure ports or database connections
|
|
||||||
# separately when running this way, depending on the application's needs.
|
|
||||||
|
|
||||||
# Remember to navigate back when done
|
|
||||||
# cd ..
|
|
||||||
Useful Docker Commands
|
|
||||||
Here are some helpful commands for interacting with your running Docker containers:
|
|
||||||
|
|
||||||
Copying files from a container:
|
|
||||||
To copy a file from a running container to your local machine's current directory:
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
# Syntax: docker cp <CONTAINER_ID_OR_NAME>:<PATH_IN_CONTAINER> <LOCAL_DESTINATION_PATH>
|
|
||||||
docker cp <CONTAINER_ID>:/app/PATH/Filename.ext .
|
|
||||||
(Replace <CONTAINER_ID>, /app/PATH/Filename.ext with actual values. . refers to the current directory on your host machine.)
|
|
||||||
|
|
||||||
Accessing a container's shell:
|
|
||||||
To get an interactive bash shell inside a running container:
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
# Syntax: docker exec -it <CONTAINER_ID_OR_NAME> bash
|
|
||||||
docker exec -it <CONTAINER_ID> bash
|
|
||||||
(Replace <CONTAINER_ID> with the actual container ID or name. You can find this using docker ps.)
|
|
||||||
|
|
||||||
Viewing running containers:
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
docker ps
|
|
||||||
Viewing application logs:
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
# Follow logs for all services
|
|
||||||
docker-compose logs -f
|
|
||||||
|
|
||||||
# Follow logs for a specific service
|
|
||||||
docker-compose logs -f <SERVICE_NAME>
|
|
||||||
(Replace <SERVICE_NAME> with the name defined in your docker-compose.yml)
|
|
||||||
|
|
||||||
Stopping the application:
|
|
||||||
To stop the services started with docker-compose up -d:
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
docker-compose down
|
|
||||||
@ -1,342 +0,0 @@
|
|||||||
#Uncomment the "servlet" and "context-path" lines below to make the fhir endpoint available at /example/path/fhir instead of the default value of /fhir
|
|
||||||
server:
|
|
||||||
# servlet:
|
|
||||||
# context-path: /example/path
|
|
||||||
port: 8080
|
|
||||||
#Adds the option to go to eg. http://localhost:8080/actuator/health for seeing the running configuration
|
|
||||||
#see https://docs.spring.io/spring-boot/docs/current/reference/html/actuator.html#actuator.endpoints
|
|
||||||
management:
|
|
||||||
#The following configuration will enable the actuator endpoints at /actuator/health, /actuator/info, /actuator/prometheus, /actuator/metrics. For security purposes, only /actuator/health is enabled by default.
|
|
||||||
endpoints:
|
|
||||||
enabled-by-default: false
|
|
||||||
web:
|
|
||||||
exposure:
|
|
||||||
include: 'health' # or e.g. 'info,health,prometheus,metrics' or '*' for all'
|
|
||||||
endpoint:
|
|
||||||
info:
|
|
||||||
enabled: true
|
|
||||||
metrics:
|
|
||||||
enabled: true
|
|
||||||
health:
|
|
||||||
enabled: true
|
|
||||||
probes:
|
|
||||||
enabled: true
|
|
||||||
group:
|
|
||||||
liveness:
|
|
||||||
include:
|
|
||||||
- livenessState
|
|
||||||
- readinessState
|
|
||||||
prometheus:
|
|
||||||
enabled: true
|
|
||||||
prometheus:
|
|
||||||
metrics:
|
|
||||||
export:
|
|
||||||
enabled: true
|
|
||||||
spring:
|
|
||||||
main:
|
|
||||||
allow-circular-references: true
|
|
||||||
flyway:
|
|
||||||
enabled: false
|
|
||||||
baselineOnMigrate: true
|
|
||||||
fail-on-missing-locations: false
|
|
||||||
datasource:
|
|
||||||
#url: 'jdbc:h2:file:./target/database/h2'
|
|
||||||
url: jdbc:h2:file:/app/h2-data/fhir;DB_CLOSE_DELAY=-1;AUTO_SERVER=TRUE
|
|
||||||
#url: jdbc:h2:mem:test_mem
|
|
||||||
username: sa
|
|
||||||
password: null
|
|
||||||
driverClassName: org.h2.Driver
|
|
||||||
max-active: 15
|
|
||||||
|
|
||||||
# database connection pool size
|
|
||||||
hikari:
|
|
||||||
maximum-pool-size: 10
|
|
||||||
jpa:
|
|
||||||
properties:
|
|
||||||
hibernate.format_sql: false
|
|
||||||
hibernate.show_sql: false
|
|
||||||
|
|
||||||
#Hibernate dialect is automatically detected except Postgres and H2.
|
|
||||||
#If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
|
|
||||||
#If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgresDialect
|
|
||||||
hibernate.dialect: ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
|
|
||||||
# hibernate.hbm2ddl.auto: update
|
|
||||||
# hibernate.jdbc.batch_size: 20
|
|
||||||
# hibernate.cache.use_query_cache: false
|
|
||||||
# hibernate.cache.use_second_level_cache: false
|
|
||||||
# hibernate.cache.use_structured_entries: false
|
|
||||||
# hibernate.cache.use_minimal_puts: false
|
|
||||||
|
|
||||||
### These settings will enable fulltext search with lucene or elastic
|
|
||||||
hibernate.search.enabled: false
|
|
||||||
### lucene parameters
|
|
||||||
# hibernate.search.backend.type: lucene
|
|
||||||
# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer
|
|
||||||
# hibernate.search.backend.directory.type: local-filesystem
|
|
||||||
# hibernate.search.backend.directory.root: target/lucenefiles
|
|
||||||
# hibernate.search.backend.lucene_version: lucene_current
|
|
||||||
### elastic parameters ===> see also elasticsearch section below <===
|
|
||||||
# hibernate.search.backend.type: elasticsearch
|
|
||||||
# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer
|
|
||||||
hapi:
|
|
||||||
fhir:
|
|
||||||
### This flag when enabled to true, will avail evaluate measure operations from CR Module.
|
|
||||||
### Flag is false by default, can be passed as command line argument to override.
|
|
||||||
cr:
|
|
||||||
enabled: false
|
|
||||||
caregaps:
|
|
||||||
reporter: "default"
|
|
||||||
section_author: "default"
|
|
||||||
cql:
|
|
||||||
use_embedded_libraries: true
|
|
||||||
compiler:
|
|
||||||
### These are low-level compiler options.
|
|
||||||
### They are not typically needed by most users.
|
|
||||||
# validate_units: true
|
|
||||||
# verify_only: false
|
|
||||||
# compatibility_level: "1.5"
|
|
||||||
error_level: Info
|
|
||||||
signature_level: All
|
|
||||||
# analyze_data_requirements: false
|
|
||||||
# collapse_data_requirements: false
|
|
||||||
# translator_format: JSON
|
|
||||||
# enable_date_range_optimization: true
|
|
||||||
enable_annotations: true
|
|
||||||
enable_locators: true
|
|
||||||
enable_results_type: true
|
|
||||||
enable_detailed_errors: true
|
|
||||||
# disable_list_traversal: false
|
|
||||||
# disable_list_demotion: false
|
|
||||||
# enable_interval_demotion: false
|
|
||||||
# enable_interval_promotion: false
|
|
||||||
# disable_method_invocation: false
|
|
||||||
# require_from_keyword: false
|
|
||||||
# disable_default_model_info_load: false
|
|
||||||
runtime:
|
|
||||||
debug_logging_enabled: false
|
|
||||||
# enable_validation: false
|
|
||||||
# enable_expression_caching: true
|
|
||||||
terminology:
|
|
||||||
valueset_preexpansion_mode: REQUIRE # USE_IF_PRESENT, REQUIRE, IGNORE
|
|
||||||
valueset_expansion_mode: PERFORM_NAIVE_EXPANSION # AUTO, USE_EXPANSION_OPERATION, PERFORM_NAIVE_EXPANSION
|
|
||||||
valueset_membership_mode: USE_EXPANSION # AUTO, USE_VALIDATE_CODE_OPERATION, USE_EXPANSION
|
|
||||||
code_lookup_mode: USE_VALIDATE_CODE_OPERATION # AUTO, USE_VALIDATE_CODE_OPERATION, USE_CODESYSTEM_URL
|
|
||||||
data:
|
|
||||||
search_parameter_mode: USE_SEARCH_PARAMETERS # AUTO, USE_SEARCH_PARAMETERS, FILTER_IN_MEMORY
|
|
||||||
terminology_parameter_mode: FILTER_IN_MEMORY # AUTO, USE_VALUE_SET_URL, USE_INLINE_CODES, FILTER_IN_MEMORY
|
|
||||||
profile_mode: DECLARED # ENFORCED, DECLARED, OPTIONAL, TRUST, OFF
|
|
||||||
|
|
||||||
cdshooks:
|
|
||||||
enabled: false
|
|
||||||
clientIdHeaderName: client_id
|
|
||||||
|
|
||||||
### This enables the swagger-ui at /fhir/swagger-ui/index.html as well as the /fhir/api-docs (see https://hapifhir.io/hapi-fhir/docs/server_plain/openapi.html)
|
|
||||||
openapi_enabled: true
|
|
||||||
### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5
|
|
||||||
fhir_version: R4
|
|
||||||
### Flag is false by default. This flag enables runtime installation of IG's.
|
|
||||||
ig_runtime_upload_enabled: false
|
|
||||||
### This flag when enabled to true, will avail evaluate measure operations from CR Module.
|
|
||||||
|
|
||||||
### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers
|
|
||||||
### to determine the FHIR server address
|
|
||||||
# use_apache_address_strategy: false
|
|
||||||
### forces the use of the https:// protocol for the returned server address.
|
|
||||||
### alternatively, it may be set using the X-Forwarded-Proto header.
|
|
||||||
# use_apache_address_strategy_https: false
|
|
||||||
### enables the server to overwrite defaults on HTML, css, etc. under the url pattern of eg. /content/custom **
|
|
||||||
### Folder with custom content MUST be named custom. If omitted then default content applies
|
|
||||||
custom_content_path: ./custom
|
|
||||||
### enables the server host custom content. If e.g. the value ./configs/app is supplied then the content
|
|
||||||
### will be served under /web/app
|
|
||||||
#app_content_path: ./configs/app
|
|
||||||
### enable to set the Server URL
|
|
||||||
# server_address: http://hapi.fhir.org/baseR4
|
|
||||||
# defer_indexing_for_codesystems_of_size: 101
|
|
||||||
### Flag is true by default. This flag filters resources during package installation, allowing only those resources with a valid status (e.g. active) to be installed.
|
|
||||||
# validate_resource_status_for_package_upload: false
|
|
||||||
# install_transitive_ig_dependencies: true
|
|
||||||
#implementationguides:
|
|
||||||
### example from registry (packages.fhir.org)
|
|
||||||
# swiss:
|
|
||||||
# name: swiss.mednet.fhir
|
|
||||||
# version: 0.8.0
|
|
||||||
# reloadExisting: false
|
|
||||||
# installMode: STORE_AND_INSTALL
|
|
||||||
# example not from registry
|
|
||||||
# ips_1_0_0:
|
|
||||||
# packageUrl: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz
|
|
||||||
# name: hl7.fhir.uv.ips
|
|
||||||
# version: 1.0.0
|
|
||||||
# supported_resource_types:
|
|
||||||
# - Patient
|
|
||||||
# - Observation
|
|
||||||
##################################################
|
|
||||||
# Allowed Bundle Types for persistence (defaults are: COLLECTION,DOCUMENT,MESSAGE)
|
|
||||||
##################################################
|
|
||||||
# allowed_bundle_types: COLLECTION,DOCUMENT,MESSAGE,TRANSACTION,TRANSACTIONRESPONSE,BATCH,BATCHRESPONSE,HISTORY,SEARCHSET
|
|
||||||
# allow_cascading_deletes: true
|
|
||||||
# allow_contains_searches: true
|
|
||||||
# allow_external_references: true
|
|
||||||
# allow_multiple_delete: true
|
|
||||||
# allow_override_default_search_params: true
|
|
||||||
# auto_create_placeholder_reference_targets: false
|
|
||||||
# mass_ingestion_mode_enabled: false
|
|
||||||
### tells the server to automatically append the current version of the target resource to references at these paths
|
|
||||||
# auto_version_reference_at_paths: Device.patient, Device.location, Device.parent, DeviceMetric.parent, DeviceMetric.source, Observation.device, Observation.subject
|
|
||||||
# ips_enabled: false
|
|
||||||
# default_encoding: JSON
|
|
||||||
# default_pretty_print: true
|
|
||||||
# default_page_size: 20
|
|
||||||
# delete_expunge_enabled: true
|
|
||||||
# enable_repository_validating_interceptor: true
|
|
||||||
# enable_index_missing_fields: false
|
|
||||||
# enable_index_of_type: true
|
|
||||||
# enable_index_contained_resource: false
|
|
||||||
# upliftedRefchains_enabled: true
|
|
||||||
# resource_dbhistory_enabled: false
|
|
||||||
### !!Extended Lucene/Elasticsearch Indexing is still a experimental feature, expect some features (e.g. _total=accurate) to not work as expected!!
|
|
||||||
### more information here: https://hapifhir.io/hapi-fhir/docs/server_jpa/elastic.html
|
|
||||||
advanced_lucene_indexing: false
|
|
||||||
bulk_export_enabled: false
|
|
||||||
bulk_import_enabled: false
|
|
||||||
# language_search_parameter_enabled: true
|
|
||||||
# enforce_referential_integrity_on_delete: false
|
|
||||||
# This is an experimental feature, and does not fully support _total and other FHIR features.
|
|
||||||
# enforce_referential_integrity_on_delete: false
|
|
||||||
# enforce_referential_integrity_on_write: false
|
|
||||||
# etag_support_enabled: true
|
|
||||||
# expunge_enabled: true
|
|
||||||
# client_id_strategy: ALPHANUMERIC
|
|
||||||
# server_id_strategy: SEQUENTIAL_NUMERIC
|
|
||||||
# fhirpath_interceptor_enabled: false
|
|
||||||
# filter_search_enabled: true
|
|
||||||
# graphql_enabled: true
|
|
||||||
narrative_enabled: true
|
|
||||||
mdm_enabled: false
|
|
||||||
mdm_rules_json_location: "mdm-rules.json"
|
|
||||||
## see: https://hapifhir.io/hapi-fhir/docs/interceptors/built_in_server_interceptors.html#jpa-server-retry-on-version-conflicts
|
|
||||||
# userRequestRetryVersionConflictsInterceptorEnabled : false
|
|
||||||
# local_base_urls:
|
|
||||||
# - https://hapi.fhir.org/baseR4
|
|
||||||
# pre_expand_value_sets: true
|
|
||||||
# enable_task_pre_expand_value_sets: true
|
|
||||||
# pre_expand_value_sets_default_count: 1000
|
|
||||||
# pre_expand_value_sets_max_count: 1000
|
|
||||||
# maximum_expansion_size: 1000
|
|
||||||
|
|
||||||
logical_urls:
|
|
||||||
- http://terminology.hl7.org/*
|
|
||||||
- https://terminology.hl7.org/*
|
|
||||||
- http://snomed.info/*
|
|
||||||
- https://snomed.info/*
|
|
||||||
- http://unitsofmeasure.org/*
|
|
||||||
- https://unitsofmeasure.org/*
|
|
||||||
- http://loinc.org/*
|
|
||||||
- https://loinc.org/*
|
|
||||||
# partitioning:
|
|
||||||
# allow_references_across_partitions: false
|
|
||||||
# partitioning_include_in_search_hashes: false
|
|
||||||
# conditional_create_duplicate_identifiers_enabled: false
|
|
||||||
cors:
|
|
||||||
allow_Credentials: true
|
|
||||||
# These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List-
|
|
||||||
allowed_origin:
|
|
||||||
- '*'
|
|
||||||
|
|
||||||
# Search coordinator thread pool sizes
|
|
||||||
search-coord-core-pool-size: 20
|
|
||||||
search-coord-max-pool-size: 100
|
|
||||||
search-coord-queue-capacity: 200
|
|
||||||
|
|
||||||
# Search Prefetch Thresholds.
|
|
||||||
|
|
||||||
# This setting sets the number of search results to prefetch. For example, if this list
|
|
||||||
# is set to [100, 1000, -1] then the server will initially load 100 results and not
|
|
||||||
# attempt to load more. If the user requests subsequent page(s) of results and goes
|
|
||||||
# past 100 results, the system will load the next 900 (up to the following threshold of 1000).
|
|
||||||
# The system will progressively work through these thresholds.
|
|
||||||
# A threshold of -1 means to load all results. Note that if the final threshold is a
|
|
||||||
# number other than -1, the system will never prefetch more than the given number.
|
|
||||||
search_prefetch_thresholds: 13,503,2003,-1
|
|
||||||
|
|
||||||
# comma-separated package names, will be @ComponentScan'ed by Spring to allow for creating custom Spring beans
|
|
||||||
#custom-bean-packages:
|
|
||||||
|
|
||||||
# comma-separated list of fully qualified interceptor classes.
|
|
||||||
# classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages',
|
|
||||||
# or will be instantiated via reflection using an no-arg contructor; then registered with the server
|
|
||||||
#custom-interceptor-classes:
|
|
||||||
|
|
||||||
# comma-separated list of fully qualified provider classes.
|
|
||||||
# classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages',
|
|
||||||
# or will be instantiated via reflection using an no-arg contructor; then registered with the server
|
|
||||||
#custom-provider-classes:
|
|
||||||
|
|
||||||
# Threadpool size for BATCH'ed GETs in a bundle.
|
|
||||||
# bundle_batch_pool_size: 10
|
|
||||||
# bundle_batch_pool_max_size: 50
|
|
||||||
|
|
||||||
# logger:
|
|
||||||
# error_format: 'ERROR - ${requestVerb} ${requestUrl}'
|
|
||||||
# format: >-
|
|
||||||
# Path[${servletPath}] Source[${requestHeader.x-forwarded-for}]
|
|
||||||
# Operation[${operationType} ${operationName} ${idOrResourceName}]
|
|
||||||
# UA[${requestHeader.user-agent}] Params[${requestParameters}]
|
|
||||||
# ResponseEncoding[${responseEncodingNoDefault}]
|
|
||||||
# log_exceptions: true
|
|
||||||
# name: fhirtest.access
|
|
||||||
# max_binary_size: 104857600
|
|
||||||
# max_page_size: 200
|
|
||||||
# retain_cached_searches_mins: 60
|
|
||||||
# reuse_cached_search_results_millis: 60000
|
|
||||||
tester:
|
|
||||||
home:
|
|
||||||
name: FHIRFLARE Tester
|
|
||||||
server_address: http://localhost:8080/fhir
|
|
||||||
refuse_to_fetch_third_party_urls: false
|
|
||||||
fhir_version: R4
|
|
||||||
global:
|
|
||||||
name: Global Tester
|
|
||||||
server_address: "http://hapi.fhir.org/baseR4"
|
|
||||||
refuse_to_fetch_third_party_urls: false
|
|
||||||
fhir_version: R4
|
|
||||||
# validation:
|
|
||||||
# requests_enabled: true
|
|
||||||
# responses_enabled: true
|
|
||||||
# binary_storage_enabled: true
|
|
||||||
inline_resource_storage_below_size: 4000
|
|
||||||
# bulk_export_enabled: true
|
|
||||||
# subscription:
|
|
||||||
# resthook_enabled: true
|
|
||||||
# websocket_enabled: false
|
|
||||||
# polling_interval_ms: 5000
|
|
||||||
# immediately_queued: false
|
|
||||||
# email:
|
|
||||||
# from: some@test.com
|
|
||||||
# host: google.com
|
|
||||||
# port:
|
|
||||||
# username:
|
|
||||||
# password:
|
|
||||||
# auth:
|
|
||||||
# startTlsEnable:
|
|
||||||
# startTlsRequired:
|
|
||||||
# quitWait:
|
|
||||||
# lastn_enabled: true
|
|
||||||
# store_resource_in_lucene_index_enabled: true
|
|
||||||
### This is configuration for normalized quantity search level default is 0
|
|
||||||
### 0: NORMALIZED_QUANTITY_SEARCH_NOT_SUPPORTED - default
|
|
||||||
### 1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED
|
|
||||||
### 2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED
|
|
||||||
# normalized_quantity_search_level: 2
|
|
||||||
#elasticsearch:
|
|
||||||
# debug:
|
|
||||||
# pretty_print_json_log: false
|
|
||||||
# refresh_after_write: false
|
|
||||||
# enabled: false
|
|
||||||
# password: SomePassword
|
|
||||||
# required_index_status: YELLOW
|
|
||||||
# rest_url: 'localhost:9200'
|
|
||||||
# protocol: 'http'
|
|
||||||
# schema_management_strategy: CREATE
|
|
||||||
# username: SomeUsername
|
|
||||||
Loading…
x
Reference in New Issue
Block a user