feat: use ephemeral volumes and variable image

* use ephemeral volumes to avoid root mounts in user space
* use image definition using environment variable with default.

.github/ct/chart-schema.yaml

@@ -0,0 +1,23 @@
+name: str()
+home: str()
+version: str()
+apiVersion: str()
+appVersion: any(str(), num(), required=False)
+type: str()
+dependencies: any(required=False)
+description: str()
+keywords: list(str(), required=False)
+sources: list(str(), required=False)
+maintainers: list(include('maintainer'), required=False)
+icon: str(required=False)
+engine: str(required=False)
+condition: str(required=False)
+tags: str(required=False)
+deprecated: bool(required=False)
+kubeVersion: str(required=False)
+annotations: map(str(), str(), required=False)
+---
+maintainer:
+  name: str()
+  email: str(required=False)
+  url: str(required=False)

.github/ct/config.yaml

@@ -0,0 +1,15 @@
+debug: true
+remote: origin
+chart-yaml-schema: .github/ct/chart-schema.yaml
+validate-maintainers: false
+validate-chart-schema: true
+validate-yaml: true
+check-version-increment: true
+chart-dirs:
+  - charts
+helm-extra-args: --timeout 300s
+upgrade: true
+skip-missing-values: true
+release-label: release
+release-name-template: "helm-v{{ .Version }}"
+target-branch: master

.github/workflows/build-images.yaml

@@ -0,0 +1,84 @@
+name: Build Container Images
+
+on:
+  push:
+    tags:
+      - "image/v*"
+    paths-ignore:
+      - "charts/**"
+  pull_request:
+    branches: [master]
+    paths-ignore:
+      - "charts/**"
+env:
+  IMAGES: docker.io/hapiproject/hapi
+  PLATFORMS: linux/amd64,linux/arm64/v8
+
+jobs:
+  build:
+    name: Build
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Container meta for default (distroless) image
+        id: docker_meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.IMAGES }}
+          tags: |
+            type=match,pattern=image/(.*),group=1,enable=${{github.event_name != 'pull_request'}}
+           
+
+      - name: Container meta for tomcat image
+        id: docker_tomcat_meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.IMAGES }}
+          tags: |
+            type=match,pattern=image/(.*),group=1,enable=${{github.event_name != 'pull_request'}}
+          flavor: |
+            suffix=-tomcat,onlatest=true
+
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v3
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Login to DockerHub
+        uses: docker/login-action@v3
+        if: github.event_name != 'pull_request'
+        with:
+          username: ${{ secrets.DOCKERHUB_USERNAME }}
+          password: ${{ secrets.DOCKERHUB_TOKEN }}
+
+      - name: Cache Docker layers
+        uses: actions/cache@v3
+        with:
+          path: /tmp/.buildx-cache
+          key: ${{ runner.os }}-buildx-${{ github.sha }}
+          restore-keys: |
+            ${{ runner.os }}-buildx-
+
+      - name: Build and push default (distroless) image
+        id: docker_build
+        uses: docker/build-push-action@v5
+        with:
+          cache-from: type=local,src=/tmp/.buildx-cache
+          cache-to: type=local,dest=/tmp/.buildx-cache
+          push: ${{ github.event_name != 'pull_request' }}
+          tags: ${{ steps.docker_meta.outputs.tags }}
+          labels: ${{ steps.docker_meta.outputs.labels }}
+          platforms: ${{ env.PLATFORMS }}
+          target: default
+
+      - name: Build and push tomcat image
+        id: docker_build_tomcat
+        uses: docker/build-push-action@v5
+        with:
+          cache-from: type=local,src=/tmp/.buildx-cache
+          cache-to: type=local,dest=/tmp/.buildx-cache
+          push: ${{ github.event_name != 'pull_request' }}
+          tags: ${{ steps.docker_tomcat_meta.outputs.tags }}
+          labels: ${{ steps.docker_tomcat_meta.outputs.labels }}
+          platforms: ${{ env.PLATFORMS }}
+          target: tomcat

.github/workflows/chart-release.yaml

@@ -0,0 +1,41 @@
+name: Release Charts
+
+on:
+  push:
+    branches:
+      - main
+    paths:
+      - "charts/**"
+
+jobs:
+  release:
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Add workspace as safe directory
+        run: |
+          git config --global --add safe.directory /__w/FHIRFLARE-IG-Toolkit/FHIRFLARE-IG-Toolkit
+
+      - name: Checkout
+        uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # v3.5.2
+        with:
+          fetch-depth: 0
+
+      - name: Configure Git
+        run: |
+          git config user.name "$GITHUB_ACTOR"
+          git config user.email "$GITHUB_ACTOR@users.noreply.github.com"
+
+      - name: Update dependencies
+        run: find charts/ ! -path charts/ -maxdepth 1 -type d -exec helm dependency update {} \;
+
+      - name: Add Helm Repositories
+        run: |
+          helm repo add hapifhir https://hapifhir.github.io/hapi-fhir-jpaserver-starter/
+          helm repo update
+
+      - name: Run chart-releaser
+        uses: helm/chart-releaser-action@be16258da8010256c6e82849661221415f031968 # v1.5.0
+        with:
+          config: .github/ct/config.yaml
+        env:
+          CR_TOKEN: "${{ secrets.GITHUB_TOKEN }}"

.github/workflows/chart-test.yaml

@@ -0,0 +1,73 @@
+name: Lint and Test Charts
+
+on:
+  pull_request:
+    branches:
+      - master
+    paths:
+      - "charts/**"
+
+jobs:
+  lint:
+    runs-on: ubuntu-22.04
+    container: quay.io/helmpack/chart-testing:v3.11.0@sha256:f2fd21d30b64411105c7eafb1862783236a219d29f2292219a09fe94ca78ad2a
+    steps:
+      - name: Install helm-docs
+        working-directory: /tmp
+        env:
+          HELM_DOCS_URL: https://github.com/norwoodj/helm-docs/releases/download/v1.14.2/helm-docs_1.14.2_Linux_x86_64.tar.gz
+        run: |
+          curl -LSs $HELM_DOCS_URL | tar xz && \
+          mv ./helm-docs /usr/local/bin/helm-docs && \
+          chmod +x /usr/local/bin/helm-docs && \
+          helm-docs --version
+
+      - name: Add workspace as safe directory
+        run: |
+          git config --global --add safe.directory /__w/hapi-fhir-jpaserver-starter/hapi-fhir-jpaserver-starter
+
+      - name: Checkout
+        uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
+        with:
+          fetch-depth: 0
+
+      - name: Check if documentation is up-to-date
+        run: helm-docs && git diff --exit-code HEAD
+
+      - name: Run chart-testing (lint)
+        run: ct lint --config .github/ct/config.yaml
+
+  test:
+    runs-on: ubuntu-22.04
+    strategy:
+      matrix:
+        k8s-version: [1.30.8, 1.31.4, 1.32.0]
+    needs:
+      - lint
+    steps:
+      - name: Checkout
+        uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
+        with:
+          fetch-depth: 0
+
+      - name: Set up chart-testing
+        uses: helm/chart-testing-action@e6669bcd63d7cb57cb4380c33043eebe5d111992 # v2.6.1
+
+      - name: Run chart-testing (list-changed)
+        id: list-changed
+        run: |
+          changed=$(ct list-changed --config .github/ct/config.yaml)
+          if [[ -n "$changed" ]]; then
+            echo "::set-output name=changed::true"
+          fi
+
+      - name: Create k8s Kind Cluster
+        uses: helm/kind-action@dda0770415bac9fc20092cacbc54aa298604d140 # v1.8.0
+        if: ${{ steps.list-changed.outputs.changed == 'true' }}
+        with:
+          cluster_name: kind-cluster-k8s-${{ matrix.k8s-version }}
+          node_image: kindest/node:v${{ matrix.k8s-version }}
+
+      - name: Run chart-testing (install)
+        run: ct install --config .github/ct/config.yaml
+        if: ${{ steps.list-changed.outputs.changed == 'true' }}

.github/workflows/docker-publish.yml

@@ -0,0 +1,58 @@
+# This workflow builds and pushes a multi-architecture Docker image to GitHub Container Registry (ghcr.io).
+#
+# The Docker meta step is required because GitHub repository names can contain uppercase letters, but Docker image tags must be lowercase.
+# The docker/metadata-action@v5 normalizes the repository name to lowercase, ensuring the build and push steps use a valid image tag.
+#
+# This workflow builds for both AMD64 and ARM64 architectures using Docker Buildx and QEMU emulation.
+
+name: Build and Push Docker image
+
+on:
+  push:
+    branches:
+      - main
+      - '*'  # This will run the workflow on any branch
+  workflow_dispatch:  # This enables manual triggering
+
+jobs:
+  build-and-push:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v3
+        
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Log in to GitHub Container Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ghcr.io
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Docker meta
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ghcr.io/${{ github.repository }}
+
+      - name: Set normalized image name
+        run: |
+          if [[ "${{ github.ref_name }}" == "main" ]]; then
+            echo "IMAGE_NAME=$(echo ${{ steps.meta.outputs.tags }} | sed 's/:main/:latest/')" >> $GITHUB_ENV
+          else
+            echo "IMAGE_NAME=${{ steps.meta.outputs.tags }}" >> $GITHUB_ENV
+          fi
+
+      - name: Build and push multi-architecture Docker image
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          file: ./docker/Dockerfile
+          platforms: linux/amd64,linux/arm64
+          push: true
+          tags: ${{ env.IMAGE_NAME }}

.gitignore

@@ -0,0 +1,6 @@
+/instance/
+/logs/
+/.pydevproject
+/__pycache__/
+/myenv/
+/tmp/

.project

@@ -0,0 +1,23 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>FHIRFLARE-IG-Toolkit</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.python.pydev.PyDevBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.wst.validation.validationbuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.wst.jsdt.core.jsNature</nature>
+		<nature>org.python.pydev.pythonNature</nature>
+	</natures>
+</projectDescription>

.settings/.jsdtscope

@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.JRE_CONTAINER"/>
+	<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.baseBrowserLibrary"/>
+	<classpathentry kind="src" path=""/>
+	<classpathentry kind="output" path=""/>
+</classpath>

.settings/org.eclipse.wst.jsdt.ui.superType.container

@@ -0,0 +1 @@
+org.eclipse.wst.jsdt.launching.JRE_CONTAINER

.settings/org.eclipse.wst.jsdt.ui.superType.name

@@ -0,0 +1 @@
+Global

Build and Run for first time.bat

@@ -1,211 +0,0 @@
-@echo off
-setlocal enabledelayedexpansion
-
-REM --- Configuration ---
-set REPO_URL=https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git
-set CLONE_DIR=hapi-fhir-jpaserver
-set SOURCE_CONFIG_DIR=hapi-fhir-setup
-set CONFIG_FILE=application.yaml
-
-REM --- Define Paths ---
-set SOURCE_CONFIG_PATH=..\%SOURCE_CONFIG_DIR%\target\classes\%CONFIG_FILE%
-set DEST_CONFIG_PATH=%CLONE_DIR%\target\classes\%CONFIG_FILE%
-
-REM === CORRECTED: Prompt for Version ===
-:GetModeChoice
-SET "APP_MODE=" REM Clear the variable first
-echo Select Installation Mode:
-echo 1. Standalone (Includes local HAPI FHIR Server - Requires Git & Maven)
-echo 2. Lite (Excludes local HAPI FHIR Server - No Git/Maven needed)
-CHOICE /C 12 /N /M "Enter your choice (1 or 2):"
-
-IF ERRORLEVEL 2 (
-    SET APP_MODE=lite
-    goto :ModeSet
-)
-IF ERRORLEVEL 1 (
-    SET APP_MODE=standalone
-    goto :ModeSet
-)
-REM If somehow neither was chosen (e.g., Ctrl+C), loop back
-echo Invalid input. Please try again.
-goto :GetModeChoice
-
-:ModeSet
-IF "%APP_MODE%"=="" (
-    echo Invalid choice detected after checks. Exiting.
-    goto :eof
-)
-echo Selected Mode: %APP_MODE%
-echo.
-REM === END CORRECTION ===
-
-
-REM === Conditionally Execute HAPI Setup ===
-IF "%APP_MODE%"=="standalone" (
-    echo Running Standalone setup including HAPI FHIR...
-    echo.
-
-    REM --- Step 0: Clean up previous clone (optional) ---
-    echo Checking for existing directory: %CLONE_DIR%
-    if exist "%CLONE_DIR%" (
-        echo Found existing directory, removing it...
-        rmdir /s /q "%CLONE_DIR%"
-        if errorlevel 1 (
-            echo ERROR: Failed to remove existing directory: %CLONE_DIR%
-            goto :error
-        )
-        echo Existing directory removed.
-    ) else (
-        echo Directory does not exist, proceeding with clone.
-    )
-    echo.
-
-    REM --- Step 1: Clone the HAPI FHIR server repository ---
-    echo Cloning repository: %REPO_URL% into %CLONE_DIR%...
-    git clone "%REPO_URL%" "%CLONE_DIR%"
-    if errorlevel 1 (
-        echo ERROR: Failed to clone repository. Check Git installation and network connection.
-        goto :error
-    )
-    echo Repository cloned successfully.
-    echo.
-
-    REM --- Step 2: Navigate into the cloned directory ---
-    echo Changing directory to %CLONE_DIR%...
-    cd "%CLONE_DIR%"
-    if errorlevel 1 (
-        echo ERROR: Failed to change directory to %CLONE_DIR%.
-        goto :error
-    )
-    echo Current directory: %CD%
-    echo.
-
-    REM --- Step 3: Build the HAPI server using Maven ---
-    echo ===> "Starting Maven build (Step 3)...""
-    cmd /c "mvn clean package -DskipTests=true -Pboot"
-    echo ===> Maven command finished. Checking error level...
-    if errorlevel 1 (
-        echo ERROR: Maven build failed or cmd /c failed
-        cd ..
-        goto :error
-    )
-    echo Maven build completed successfully. ErrorLevel: %errorlevel%
-    echo.
-
-    REM --- Step 4: Copy the configuration file ---
-    echo ===> "Starting file copy (Step 4)..."
-    echo Copying configuration file...
-    echo Source: %SOURCE_CONFIG_PATH%
-    echo Destination: target\classes\%CONFIG_FILE%
-    xcopy "%SOURCE_CONFIG_PATH%" "target\classes\" /Y /I
-    echo ===> xcopy command finished. Checking error level...
-    if errorlevel 1 (
-        echo WARNING: Failed to copy configuration file. Check if the source file exists.
-        echo The script will continue, but the server might use default configuration.
-    ) else (
-        echo Configuration file copied successfully. ErrorLevel: %errorlevel%
-    )
-    echo.
-
-    REM --- Step 5: Navigate back to the parent directory ---
-    echo ===> "Changing directory back (Step 5)..."
-    cd ..
-    if errorlevel 1 (
-        echo ERROR: Failed to change back to the parent directory. ErrorLevel: %errorlevel%
-        goto :error
-    )
-    echo Current directory: %CD%
-    echo.
-
-) ELSE (
-    echo Running Lite setup, skipping HAPI FHIR build...
-    REM Ensure the hapi-fhir-jpaserver directory doesn't exist or is empty if Lite mode is chosen after a standalone attempt
-    if exist "%CLONE_DIR%" (
-       echo Found existing HAPI directory in Lite mode. Removing it to avoid build issues...
-       rmdir /s /q "%CLONE_DIR%"
-    )
-    REM Create empty target directories expected by Dockerfile COPY, even if not used
-    mkdir "%CLONE_DIR%\target\classes" 2> nul
-    mkdir "%CLONE_DIR%\custom" 2> nul
-    REM Create a placeholder empty WAR file to satisfy Dockerfile COPY
-    echo. > "%CLONE_DIR%\target\ROOT.war"
-    echo. > "%CLONE_DIR%\target\classes\application.yaml"
-    echo Placeholder files created for Lite mode build.
-    echo.
-)
-
-REM === Modify docker-compose.yml to set APP_MODE ===
-echo Updating docker-compose.yml with APP_MODE=%APP_MODE%...
-(
-  echo version: '3.8'
-  echo services:
-  echo   fhirflare:
-  echo     build:
-  echo       context: .
-  echo       dockerfile: Dockerfile
-  echo     ports:
-  echo       - "5000:5000"
-  echo       - "8080:8080" # Keep port exposed, even if Tomcat isn't running useful stuff in Lite
-  echo     volumes:
-  echo       - ./instance:/app/instance
-  echo       - ./static/uploads:/app/static/uploads
-  echo       - ./instance/hapi-h2-data/:/app/h2-data # Keep volume mounts consistent
-  echo       - ./logs:/app/logs
-  echo     environment:
-  echo       - FLASK_APP=app.py
-  echo       - FLASK_ENV=development
-  echo       - NODE_PATH=/usr/lib/node_modules
-  echo       - APP_MODE=%APP_MODE%
-  echo       - APP_BASE_URL=http://localhost:5000
-  echo       - HAPI_FHIR_URL=http://localhost:8080/fhir 
-  echo     command: supervisord -c /etc/supervisord.conf
-) > docker-compose.yml.tmp
-
-REM Check if docker-compose.yml.tmp was created successfully
-if not exist docker-compose.yml.tmp (
-    echo ERROR: Failed to create temporary docker-compose file.
-    goto :error
-)
-
-REM Replace the original docker-compose.yml
-del docker-compose.yml /Q > nul 2>&1
-ren docker-compose.yml.tmp docker-compose.yml
-echo docker-compose.yml updated successfully.
-echo.
-
-REM --- Step 6: Build Docker images ---
-echo ===> Starting Docker build (Step 6)...
-docker-compose build --no-cache
-if errorlevel 1 (
-    echo ERROR: Docker Compose build failed. Check Docker installation and docker-compose.yml file. ErrorLevel: %errorlevel%
-    goto :error
-)
-echo Docker images built successfully. ErrorLevel: %errorlevel%
-echo.
-
-REM --- Step 7: Start Docker containers ---
-echo ===> Starting Docker containers (Step 7)...
-docker-compose up -d
-if errorlevel 1 (
-    echo ERROR: Docker Compose up failed. Check Docker installation and container configurations. ErrorLevel: %errorlevel%
-    goto :error
-)
-echo Docker containers started successfully. ErrorLevel: %errorlevel%
-echo.
-
-echo ====================================
-echo Script finished successfully! (Mode: %APP_MODE%)
-echo ====================================
-goto :eof
-
-:error
-echo ------------------------------------
-echo An error occurred. Script aborted.
-echo ------------------------------------
-pause
-exit /b 1
-
-:eof
-echo Script execution finished.
-pause

DockerCommands.MD

@@ -1,26 +0,0 @@
-Docker Commands.MD
-
-
-<HAPI-server.>
-to pull and clone:
-git clone https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git hapi-fhir-jpaserver
- 
-to build:
-mvn clean package -DskipTests=true -Pboot
- 
-to run:
-java -jar target/ROOT.war
-
-
-<rest-of-the-app:>
-
-docker-compose build --no-cache
-docker-compose  up -d
-
-
-
-<useful-stuff:>
-
-cp <CONTAINERID>:/app/PATH/Filename.ext .     - . copies to the root folder you ran it from
-
-docker exec -it <CONTAINERID> bash - to get a bash - session in the container  - 

Dockerfile

@@ -1,57 +0,0 @@
-# Base image with Python and Java
-FROM tomcat:10.1-jdk17
-
-# Install build dependencies, Node.js 18, and coreutils (for stdbuf)
-RUN apt-get update && apt-get install -y --no-install-recommends \
-    python3 python3-pip python3-venv curl coreutils \
-    && curl -fsSL https://deb.nodesource.com/setup_18.x | bash - \
-    && apt-get install -y --no-install-recommends nodejs \
-    && rm -rf /var/lib/apt/lists/*
-
-# Install specific versions of GoFSH and SUSHI
-# REMOVED pip install fhirpath from this line
-RUN npm install -g gofsh fsh-sushi
-
-# Set up Python environment
-WORKDIR /app
-RUN python3 -m venv /app/venv
-ENV PATH="/app/venv/bin:$PATH"
-
-# ADDED: Uninstall old fhirpath just in case it's in requirements.txt
-RUN pip uninstall -y fhirpath || true
-# ADDED: Install the new fhirpathpy library
-RUN pip install --no-cache-dir fhirpathpy
-
-# Copy Flask files
-COPY requirements.txt .
-# Install requirements (including Pydantic - check version compatibility if needed)
-RUN pip install --no-cache-dir -r requirements.txt
-COPY app.py .
-COPY services.py .
-COPY forms.py .
-COPY package.py .
-COPY templates/ templates/
-COPY static/ static/
-COPY tests/ tests/
-
-# Ensure /tmp, /app/h2-data, /app/static/uploads, and /app/logs are writable
-RUN mkdir -p /tmp /app/h2-data /app/static/uploads /app/logs && chmod 777 /tmp /app/h2-data /app/static/uploads /app/logs
-
-# Copy pre-built HAPI WAR and configuration
-COPY hapi-fhir-jpaserver/target/ROOT.war /usr/local/tomcat/webapps/
-COPY hapi-fhir-jpaserver/target/classes/application.yaml /usr/local/tomcat/conf/
-COPY hapi-fhir-jpaserver/target/classes/application.yaml /app/config/application.yaml
-COPY hapi-fhir-jpaserver/target/classes/application.yaml /usr/local/tomcat/webapps/app/config/application.yaml
-COPY hapi-fhir-jpaserver/custom/ /usr/local/tomcat/webapps/custom/
-
-# Install supervisord
-RUN pip install supervisor
-
-# Configure supervisord
-COPY supervisord.conf /etc/supervisord.conf
-
-# Expose ports
-EXPOSE 5000 8080
-
-# Start supervisord
-CMD ["supervisord", "-c", "/etc/supervisord.conf"]

Run.bat

@@ -1,25 +0,0 @@
-REM --- Step 1: Start Docker containers ---
-echo ===> Starting Docker containers (Step 7)...
-docker-compose up -d
-if errorlevel 1 (
-    echo ERROR: Docker Compose up failed. Check Docker installation and container configurations. ErrorLevel: %errorlevel%
-    goto :error
-)
-echo Docker containers started successfully. ErrorLevel: %errorlevel%
-echo.
-
-echo ====================================
-echo Script finished successfully!
-echo ====================================
-goto :eof
-
-:error
-echo ------------------------------------
-echo An error occurred. Script aborted.
-echo ------------------------------------
-pause
-exit /b 1
-
-:eof
-echo Script execution finished.
-pause

app.py

@@ -1,6 +1,10 @@
 import sys
 import os
-sys.path.append(os.path.abspath(os.path.dirname(__file__)))
+# Make paths relative to the current directory instead of absolute '/app' paths
+CURRENT_DIR = os.path.abspath(os.path.dirname(__file__))
+# Introduce app_dir variable that can be overridden by environment
+app_dir = os.environ.get('APP_DIR', CURRENT_DIR)
+sys.path.append(CURRENT_DIR)
 import datetime
 import shutil
 import queue
@@ -52,16 +56,19 @@ from logging.handlers import RotatingFileHandler
 #app setup
 app = Flask(__name__)
 app.config['SECRET_KEY'] = os.environ.get('SECRET_KEY', 'your-fallback-secret-key-here')
-app.config['SQLALCHEMY_DATABASE_URI'] = os.environ.get('DATABASE_URL', 'sqlite:////app/instance/fhir_ig.db')
+
+# Update paths to be relative to current directory
+instance_path = os.path.join(CURRENT_DIR, 'instance')
+app.config['SQLALCHEMY_DATABASE_URI'] = os.environ.get('DATABASE_URL', f'sqlite:///{os.path.join(instance_path, "fhir_ig.db")}')
 app.config['SQLALCHEMY_TRACK_MODIFICATIONS'] = False
-app.config['FHIR_PACKAGES_DIR'] = '/app/instance/fhir_packages'
+app.config['FHIR_PACKAGES_DIR'] = os.path.join(instance_path, 'fhir_packages')
 app.config['API_KEY'] = os.environ.get('API_KEY', 'your-fallback-api-key-here')
 app.config['VALIDATE_IMPOSED_PROFILES'] = True
 app.config['DISPLAY_PROFILE_RELATIONSHIPS'] = True
-app.config['UPLOAD_FOLDER'] = '/app/static/uploads'  # For GoFSH output
+app.config['UPLOAD_FOLDER'] = os.path.join(CURRENT_DIR, 'static', 'uploads')  # For GoFSH output
 app.config['APP_BASE_URL'] = os.environ.get('APP_BASE_URL', 'http://localhost:5000')
 app.config['HAPI_FHIR_URL'] = os.environ.get('HAPI_FHIR_URL', 'http://localhost:8080/fhir')
-CONFIG_PATH = '/usr/local/tomcat/conf/application.yaml'
+CONFIG_PATH = os.environ.get('CONFIG_PATH', '/usr/local/tomcat/conf/application.yaml')
 
 # Basic Swagger configuration
 app.config['SWAGGER'] = {
@@ -228,6 +235,11 @@ db = SQLAlchemy(app)
 csrf = CSRFProtect(app)
 migrate = Migrate(app, db)
 
+# Add a global application state dictionary for sharing state between threads
+app_state = {
+    'fetch_failed': False
+}
+
 # @app.route('/clear-cache')
 # def clear_cache():
 #     """Clears the in-memory package cache, the DB timestamp, and the CachedPackage table."""
@@ -695,7 +707,7 @@ def perform_cache_refresh_and_log():
             now_ts = datetime.datetime.now(datetime.timezone.utc)
             app.config['MANUAL_PACKAGE_CACHE'] = normalized_packages
             app.config['MANUAL_CACHE_TIMESTAMP'] = now_ts
-            session['fetch_failed'] = fetch_failed # Update session flag reflecting fetch outcome
+            app_state['fetch_failed'] = fetch_failed # Update app_state instead of session
             logger.info(f"Updated in-memory cache with {len(normalized_packages)} packages. Fetch failed: {fetch_failed}")
 
             # 6. Cache in Database (if successful fetch)
@@ -2194,7 +2206,7 @@ def api_upload_test_data():
         if auth_type not in ['none', 'bearerToken', 'basic']:
             return jsonify({"status": "error", "message": "Invalid Authentication Type."}), 400
         if auth_type == 'bearerToken' and not auth_token:
-            return jsonify({"status": "error", "message": "Bearer Token required."}), 400
+            return jsonify({"status": "error", "message": "auth_token required for bearerToken."}), 400
         if auth_type == 'basic' and (not username or not password):
             return jsonify({"status": "error", "message": "Username and Password required for Basic Authentication."}), 400
         if upload_mode not in ['individual', 'transaction']:
@@ -2238,7 +2250,7 @@ def api_upload_test_data():
 
         # --- Prepare Server Info and Options ---
         server_info = {'url': fhir_server_url, 'auth_type': auth_type}
-        if auth_type == 'bearerToken':
+        if auth_type == 'bearer':
             server_info['auth_token'] = auth_token
         elif auth_type == 'basic':
             credentials = f"{username}:{password}"
@@ -2658,7 +2670,7 @@ def search_and_import():
             raw_packages = fetch_packages_from_registries(search_term='')
             logger.debug(f"fetch_packages_from_registries returned {len(raw_packages)} raw packages.")
             if not raw_packages:
-                logger.warning("fetch_packages_from_registries returned no packages. Handling fallback or empty list.")
+                logger.warning("No packages returned from registries during refresh.")
                 normalized_packages = []
                 fetch_failed_flag = True
                 session['fetch_failed'] = True
@@ -2672,6 +2684,7 @@ def search_and_import():
                 now_ts = datetime.datetime.now(datetime.timezone.utc)
                 app.config['MANUAL_PACKAGE_CACHE'] = normalized_packages
                 app.config['MANUAL_CACHE_TIMESTAMP'] = now_ts
+                app_state['fetch_failed'] = False
                 logger.info(f"Stored {len(normalized_packages)} packages in manual cache (memory).")
 
                 # Save to CachedPackage table
@@ -2881,10 +2894,18 @@ def safe_parse_version_local(v_str): # Use different name
                 elif suffix in ['draft', 'ballot', 'preview']: return pkg_version_local.parse(f"{base_part}b0")
                 elif suffix and suffix.startswith('rc'): return pkg_version_local.parse(f"{base_part}rc{ ''.join(filter(str.isdigit, suffix)) or '0'}")
                 return pkg_version_local.parse(base_part)
-            except pkg_version_local.InvalidVersion: logger_details.warning(f"[DetailsView] Invalid base version '{base_part}' after splitting '{original_v_str}'. Treating as alpha."); return pkg_version_local.parse("0.0.0a0")
-            except Exception as e: logger_details.error(f"[DetailsView] Unexpected error parsing FHIR-suffixed version '{original_v_str}': {e}"); return pkg_version_local.parse("0.0.0a0")
-        else: logger_details.warning(f"[DetailsView] Unparseable version '{original_v_str}' (base '{base_part}' not standard). Treating as alpha."); return pkg_version_local.parse("0.0.0a0")
-    except Exception as e: logger_details.error(f"[DetailsView] Unexpected error in safe_parse_version_local for '{v_str}': {e}"); return pkg_version_local.parse("0.0.0a0")
+            except pkg_version_local.InvalidVersion: 
+                logger_details.warning(f"[DetailsView] Invalid base version '{base_part}' after splitting '{original_v_str}'. Treating as alpha.")
+                return pkg_version_local.parse("0.0.0a0")
+            except Exception as e: 
+                logger_details.error(f"[DetailsView] Unexpected error parsing FHIR-suffixed version '{original_v_str}': {e}")
+                return pkg_version_local.parse("0.0.0a0")
+        else: 
+            logger_details.warning(f"[DetailsView] Unparseable version '{original_v_str}' (base '{base_part}' not standard). Treating as alpha.")
+            return pkg_version_local.parse("0.0.0a0")
+    except Exception as e: 
+        logger_details.error(f"[DetailsView] Unexpected error in safe_parse_version_local for '{v_str}': {e}")
+        return pkg_version_local.parse("0.0.0a0")
 # --- End Local Helper Definition ---
 
 @app.route('/package-details/<name>')
@@ -3072,4 +3093,4 @@ if __name__ == '__main__':
         logger.debug(f"Attempting to create database tables for URI: {app.config['SQLALCHEMY_DATABASE_URI']}")
         db.create_all()
         logger.info("Database tables created successfully (if they didn't exist).")
-    app.run(host='0.0.0.0', port=5000, debug=False)
+    app.run(host='0.0.0.0', port=5000, debug=False)

charts/.gitignore

@@ -0,0 +1 @@
+/hapi-fhir-jpaserver-0.20.0.tgz

charts/fhirflare-ig-toolkit/.gitignore

@@ -0,0 +1 @@
+/rendered/

charts/fhirflare-ig-toolkit/Chart.lock

@@ -0,0 +1,3 @@
+dependencies: []
+digest: sha256:e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855
+generated: "2025-08-04T14:30:00.000000000Z"

charts/fhirflare-ig-toolkit/Chart.yaml

@@ -0,0 +1,16 @@
+apiVersion: v2
+name: fhirflare-ig-toolkit
+version: 0.3.0
+description: Helm chart for deploying the fhirflare-ig-toolkit application
+type: application
+appVersion: "latest"
+icon: https://github.com/jgsuess/FHIRFLARE-IG-Toolkit/raw/main/static/FHIRFLARE.png
+keywords:
+  - fhir
+  - healthcare
+  - ig-toolkit
+  - implementation-guide
+home: https://github.com/jgsuess/FHIRFLARE-IG-Toolkit
+maintainers:
+  - name: Jörn Guy Süß
+    email: jgsuess@gmail.com

charts/fhirflare-ig-toolkit/templates/_helpers.tpl

@@ -0,0 +1,152 @@
+{{/*
+Expand the name of the chart.
+*/}}
+{{- define "fhirflare-ig-toolkit.name" -}}
+{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" }}
+{{- end }}
+
+{{/*
+Create a default fully qualified app name.
+We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
+If release name contains chart name it will be used as a full name.
+*/}}
+{{- define "fhirflare-ig-toolkit.fullname" -}}
+{{- if .Values.fullnameOverride }}
+{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" }}
+{{- else }}
+{{- $name := default .Chart.Name .Values.nameOverride }}
+{{- if contains $name .Release.Name }}
+{{- .Release.Name | trunc 63 | trimSuffix "-" }}
+{{- else }}
+{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" }}
+{{- end }}
+{{- end }}
+{{- end }}
+
+{{/*
+Create chart name and version as used by the chart label.
+*/}}
+{{- define "fhirflare-ig-toolkit.chart" -}}
+{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" }}
+{{- end }}
+
+{{/*
+Common labels
+*/}}
+{{- define "fhirflare-ig-toolkit.labels" -}}
+helm.sh/chart: {{ include "fhirflare-ig-toolkit.chart" . }}
+{{ include "fhirflare-ig-toolkit.selectorLabels" . }}
+{{- if .Chart.AppVersion }}
+app.kubernetes.io/version: {{ .Chart.AppVersion | quote }}
+{{- end }}
+app.kubernetes.io/managed-by: {{ .Release.Service }}
+{{- end }}
+
+{{/*
+Selector labels
+*/}}
+{{- define "fhirflare-ig-toolkit.selectorLabels" -}}
+app.kubernetes.io/name: {{ include "fhirflare-ig-toolkit.name" . }}
+app.kubernetes.io/instance: {{ .Release.Name }}
+{{- end }}
+
+{{/*
+Create the name of the service account to use
+*/}}
+{{- define "hapi-fhir-jpaserver.serviceAccountName" -}}
+{{- if .Values.serviceAccount.create }}
+{{- default (include "hapi-fhir-jpaserver.fullname" .) .Values.serviceAccount.name }}
+{{- else }}
+{{- default "default" .Values.serviceAccount.name }}
+{{- end }}
+{{- end }}
+
+{{/*
+Create a default fully qualified postgresql name.
+We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
+*/}}
+{{- define "hapi-fhir-jpaserver.postgresql.fullname" -}}
+{{- $name := default "postgresql" .Values.postgresql.nameOverride -}}
+{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" -}}
+{{- end -}}
+
+{{/*
+Get the Postgresql credentials secret name.
+*/}}
+{{- define "hapi-fhir-jpaserver.postgresql.secretName" -}}
+{{- if .Values.postgresql.enabled -}}
+    {{- if .Values.postgresql.auth.existingSecret -}}
+        {{- printf "%s" .Values.postgresql.auth.existingSecret -}}
+    {{- else -}}
+        {{- printf "%s" (include "hapi-fhir-jpaserver.postgresql.fullname" .) -}}
+    {{- end -}}
+{{- else }}
+    {{- if .Values.externalDatabase.existingSecret -}}
+        {{- printf "%s" .Values.externalDatabase.existingSecret -}}
+    {{- else -}}
+        {{ printf "%s-%s" (include "hapi-fhir-jpaserver.fullname" .) "external-db" }}
+    {{- end -}}
+{{- end -}}
+{{- end -}}
+
+{{/*
+Get the Postgresql credentials secret key.
+*/}}
+{{- define "hapi-fhir-jpaserver.postgresql.secretKey" -}}
+{{- if .Values.postgresql.enabled -}}
+    {{- if .Values.postgresql.auth.username -}}
+        {{- printf "%s" .Values.postgresql.auth.secretKeys.userPasswordKey -}}
+    {{- else -}}
+        {{- printf "%s" .Values.postgresql.auth.secretKeys.adminPasswordKey -}}
+    {{- end -}}
+{{- else }}
+    {{- if .Values.externalDatabase.existingSecret -}}
+        {{- printf "%s" .Values.externalDatabase.existingSecretKey -}}
+    {{- else -}}
+        {{- printf "postgres-password" -}}
+    {{- end -}}
+{{- end -}}
+{{- end -}}
+
+{{/*
+Add environment variables to configure database values
+*/}}
+{{- define "hapi-fhir-jpaserver.database.host" -}}
+{{- ternary (include "hapi-fhir-jpaserver.postgresql.fullname" .) .Values.externalDatabase.host .Values.postgresql.enabled -}}
+{{- end -}}
+
+{{/*
+Add environment variables to configure database values
+*/}}
+{{- define "hapi-fhir-jpaserver.database.user" -}}
+{{- if .Values.postgresql.enabled -}}
+    {{- printf "%s" .Values.postgresql.auth.username | default "postgres" -}}
+{{- else -}}
+    {{- printf "%s" .Values.externalDatabase.user -}}
+{{- end -}}
+{{- end -}}
+
+{{/*
+Add environment variables to configure database values
+*/}}
+{{- define "hapi-fhir-jpaserver.database.name" -}}
+{{- ternary .Values.postgresql.auth.database .Values.externalDatabase.database .Values.postgresql.enabled -}}
+{{- end -}}
+
+{{/*
+Add environment variables to configure database values
+*/}}
+{{- define "hapi-fhir-jpaserver.database.port" -}}
+{{- ternary "5432" .Values.externalDatabase.port .Values.postgresql.enabled -}}
+{{- end -}}
+
+{{/*
+Create the JDBC URL from the host, port and database name.
+*/}}
+{{- define "hapi-fhir-jpaserver.database.jdbcUrl" -}}
+{{- $host := (include "hapi-fhir-jpaserver.database.host" .) -}}
+{{- $port := (include "hapi-fhir-jpaserver.database.port" .) -}}
+{{- $name := (include "hapi-fhir-jpaserver.database.name" .) -}}
+{{- $appName := .Release.Name -}}
+{{ printf "jdbc:postgresql://%s:%d/%s?ApplicationName=%s" $host (int $port) $name $appName }}
+{{- end -}}

charts/fhirflare-ig-toolkit/templates/deployment.yaml

@@ -0,0 +1,91 @@
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: {{ include "fhirflare-ig-toolkit.fullname" . }}
+  labels:
+    {{- include "fhirflare-ig-toolkit.labels" . | nindent 4 }}
+spec:
+  replicas: {{ .Values.replicaCount | default 1 }}
+  selector:
+    matchLabels:
+      {{- include "fhirflare-ig-toolkit.selectorLabels" . | nindent 6 }}
+  strategy:
+    type: Recreate
+  template:
+    metadata:
+      labels:
+        {{- include "fhirflare-ig-toolkit.selectorLabels" . | nindent 8 }}
+      {{- with .Values.podAnnotations }}
+      annotations:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+    spec:
+      {{- with .Values.imagePullSecrets }}
+      imagePullSecrets:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      securityContext:
+        {{- toYaml .Values.podSecurityContext | nindent 8 }}
+      containers:
+        - name: {{ .Chart.Name }}
+          securityContext:
+            {{- toYaml .Values.securityContext | nindent 12 }}
+          image: "{{ .Values.image.repository }}:{{ .Values.image.tag | default .Chart.AppVersion }}"
+          imagePullPolicy: {{ .Values.image.pullPolicy }}
+          args: ["supervisord", "-c", "/etc/supervisord.conf"]
+          env:
+            - name: APP_BASE_URL
+              value: {{ .Values.config.appBaseUrl | default "http://localhost:5000" | quote }}
+            - name: APP_MODE
+              value: {{ .Values.config.appMode | default "lite" | quote }}
+            - name: FLASK_APP
+              value: {{ .Values.config.flaskApp | default "app.py" | quote }}
+            - name: FLASK_ENV
+              value: {{ .Values.config.flaskEnv | default "development" | quote }}
+            - name: HAPI_FHIR_URL
+              value: {{ .Values.config.externalHapiServerUrl | default "http://external-hapi-fhir:8080/fhir" | quote }}
+            - name: NODE_PATH
+              value: {{ .Values.config.nodePath | default "/usr/lib/node_modules" | quote }}
+            - name: TMPDIR
+              value: "/tmp-dir"
+          ports:
+            - name: http
+              containerPort: {{ .Values.service.port | default 5000 }}
+              protocol: TCP
+          volumeMounts:
+            - name: logs
+              mountPath: /app/logs
+            - name: tmp-dir
+              mountPath: /tmp-dir
+          {{- with .Values.resources }}
+          resources:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+          {{- with .Values.livenessProbe }}
+          livenessProbe:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+          {{- with .Values.readinessProbe }}
+          readinessProbe:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+      volumes:
+        - name: logs
+          emptyDir: {}
+        - name: tmp-dir
+          emptyDir: {}
+      # Always require Intel 64-bit architecture nodes
+      nodeSelector:
+        kubernetes.io/arch: amd64
+      {{- with .Values.nodeSelector }}
+      # Merge with user-defined nodeSelectors if any
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.affinity }}
+      affinity:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.tolerations }}
+      tolerations:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}

charts/fhirflare-ig-toolkit/templates/ingress.yaml

@@ -0,0 +1,36 @@
+{{- if .Values.ingress.enabled -}}
+{{- $fullName := include "fhirflare-ig-toolkit.fullname" . -}}
+{{- if semverCompare ">=1.19-0" .Capabilities.KubeVersion.GitVersion }}
+apiVersion: networking.k8s.io/v1
+{{- else if semverCompare ">=1.14-0" .Capabilities.KubeVersion.GitVersion }}
+apiVersion: networking.k8s.io/v1beta1
+{{- else }}
+apiVersion: extensions/v1beta1
+{{- end }}
+kind: Ingress
+metadata:
+  name: {{ $fullName }}
+  labels:
+    {{- include "fhirflare-ig-toolkit.labels" . | nindent 4 }}
+  {{- with .Values.ingress.annotations }}
+  annotations:
+    {{- toYaml . | nindent 4 }}
+  {{- end }}
+spec:
+  rules:
+  - http:
+      paths:
+      - path: /
+        {{- if semverCompare ">=1.19-0" .Capabilities.KubeVersion.GitVersion }}
+        pathType: Prefix
+        backend:
+          service:
+            name: {{ $fullName }}
+            port:
+              number: {{ .Values.service.port | default 5000 }}
+        {{- else }}
+        backend:
+          serviceName: {{ $fullName }}
+          servicePort: {{ .Values.service.port | default 5000 }}
+        {{- end }}
+{{- end }}

charts/fhirflare-ig-toolkit/templates/service.yaml

@@ -0,0 +1,18 @@
+apiVersion: v1
+kind: Service
+metadata:
+  name: {{ include "fhirflare-ig-toolkit.fullname" . }}
+  labels:
+    {{- include "fhirflare-ig-toolkit.labels" . | nindent 4 }}
+spec:
+  type: {{ .Values.service.type | default "ClusterIP" }}
+  ports:
+    - name: http
+      port: {{ .Values.service.port | default 5000 }}
+      targetPort: {{ .Values.service.port | default 5000 }}
+      protocol: TCP
+      {{- if and (eq .Values.service.type "NodePort") .Values.service.nodePort }}
+      nodePort: {{ .Values.service.nodePort }}
+      {{- end }}
+  selector:
+    {{- include "fhirflare-ig-toolkit.selectorLabels" . | nindent 4 }}

charts/fhirflare-ig-toolkit/templates/tests/test-endpoints.yaml

@@ -0,0 +1,41 @@
+apiVersion: v1
+kind: Pod
+metadata:
+  name: "{{ .Release.Name }}-fhirflare-test-endpoint"
+  labels:
+    helm.sh/chart: "{{ .Chart.Name }}-{{ .Chart.Version }}"
+    app.kubernetes.io/name: {{ .Chart.Name }}
+    app.kubernetes.io/instance: {{ .Release.Name }}
+    app.kubernetes.io/version: {{ .Chart.AppVersion | quote }}
+    app.kubernetes.io/managed-by: {{ .Release.Service }}
+    app.kubernetes.io/component: tests
+  annotations:
+    "helm.sh/hook": test
+spec:
+  restartPolicy: Never
+  containers:
+    - name: test-fhirflare-endpoint
+      image: curlimages/curl:8.12.1
+      command: ["curl", "--fail-with-body", "--retry", "5", "--retry-delay", "10"]
+      args: ["http://fhirflare:5000"]
+      securityContext:
+        allowPrivilegeEscalation: false
+        capabilities:
+          drop:
+          - ALL
+        privileged: false
+        readOnlyRootFilesystem: true
+        runAsGroup: 65534
+        runAsNonRoot: true
+        runAsUser: 65534
+        seccompProfile:
+          type: RuntimeDefault
+      resources:
+        limits:
+          cpu: 150m
+          ephemeral-storage: 2Gi
+          memory: 192Mi
+        requests:
+          cpu: 100m
+          ephemeral-storage: 50Mi
+          memory: 128Mi

charts/fhirflare-ig-toolkit/values.yaml

@@ -0,0 +1,89 @@
+# Default values for fhirflare-ig-toolkit
+replicaCount: 1
+
+image:
+  repository: ghcr.io/jgsuess/fhirflare-ig-toolkit
+  pullPolicy: Always
+  tag: "latest"
+
+imagePullSecrets: []
+nameOverride: ""
+fullnameOverride: ""
+
+# FHIRflare specific configuration
+config:
+  # Application mode: "lite" means using external HAPI server, "standalone" means running with embedded HAPI server
+  appMode: "lite"
+  # URL for the external HAPI FHIR server when in lite mode
+  externalHapiServerUrl: "http://external-hapi-fhir:8080/fhir"
+  appBaseUrl: "http://localhost:5000"
+  flaskApp: "app.py"
+  flaskEnv: "development"
+  nodePath: "/usr/lib/node_modules"
+
+service:
+  type: ClusterIP
+  port: 5000
+  nodePort: null
+
+podAnnotations: {}
+
+# podSecurityContext:
+#   fsGroup: 65532
+#   fsGroupChangePolicy: OnRootMismatch
+#   runAsNonRoot: true
+#   runAsGroup: 65532
+#   runAsUser: 65532
+#   seccompProfile:
+#     type: RuntimeDefault
+
+# securityContext:
+#   allowPrivilegeEscalation: false
+#   capabilities:
+#     drop:
+#       - ALL
+#   privileged: false
+#   readOnlyRootFilesystem: true
+#   runAsGroup: 65532
+#   runAsNonRoot: true
+#   runAsUser: 65532
+#   seccompProfile:
+#     type: RuntimeDefault
+
+resources:
+  limits:
+    cpu: 500m
+    memory: 512Mi
+    ephemeral-storage: 1Gi
+  requests:
+    cpu: 100m
+    memory: 128Mi
+    ephemeral-storage: 100Mi
+
+livenessProbe:
+  httpGet:
+    path: /
+    port: http
+  initialDelaySeconds: 30
+  periodSeconds: 10
+  timeoutSeconds: 5
+  failureThreshold: 6
+  successThreshold: 1
+
+readinessProbe:
+  httpGet:
+    path: /
+    port: http
+  initialDelaySeconds: 5
+  periodSeconds: 10
+  timeoutSeconds: 5
+  failureThreshold: 6
+  successThreshold: 1
+
+nodeSelector: {}
+tolerations: []
+affinity: {}
+
+ingress:
+  # -- whether to create a primitive Ingress to expose the FHIR server HTTP endpoint
+  enabled: false

charts/install.sh

@@ -0,0 +1,23 @@
+#!/bin/bash
+#
+# FHIRFLARE-IG-Toolkit Installation Script
+# 
+# Description:
+#   This script installs the FHIRFLARE-IG-Toolkit Helm chart into a Kubernetes cluster.
+#   It adds the FHIRFLARE-IG-Toolkit Helm repository and then installs the chart
+#   in the 'flare' namespace, creating the namespace if it doesn't exist.
+#
+# Usage:
+#   ./install.sh
+#
+# Requirements:
+#   - Helm (v3+)
+#   - kubectl configured with access to your Kubernetes cluster
+#
+
+# Add the FHIRFLARE-IG-Toolkit Helm repository
+helm repo add flare https://jgsuess.github.io/FHIRFLARE-IG-Toolkit/
+
+# Install the FHIRFLARE-IG-Toolkit chart in the 'flare' namespace
+
+helm install flare/fhirflare-ig-toolkit --namespace flare --create-namespace --generate-name --set hapi-fhir-jpaserver.postgresql.primary.persistence.storageClass=gp2 --atomic

docker-compose.yml

@@ -1,22 +0,0 @@
-version: '3.8'
-services:
-  fhirflare:
-    build:
-      context: .
-      dockerfile: Dockerfile
-    ports:
-      - "5000:5000"
-      - "8080:8080" # Keep port exposed, even if Tomcat isn't running useful stuff in Lite
-    volumes:
-      - ./instance:/app/instance
-      - ./static/uploads:/app/static/uploads
-      - ./instance/hapi-h2-data/:/app/h2-data # Keep volume mounts consistent
-      - ./logs:/app/logs
-    environment:
-      - FLASK_APP=app.py
-      - FLASK_ENV=development
-      - NODE_PATH=/usr/lib/node_modules
-      - APP_MODE=standalone
-      - APP_BASE_URL=http://localhost:5000
-      - HAPI_FHIR_URL=http://localhost:8080/fhir 
-    command: supervisord -c /etc/supervisord.conf

docker-compose/all-in-one/docker-compose.yml

@@ -0,0 +1,22 @@
+# This docker-compose file uses ephemeral Docker named volumes for all data storage.
+# These volumes persist only as long as the Docker volumes exist and are deleted if you run `docker-compose down -v`.
+# No data is stored on the host filesystem. If you want persistent storage, replace these with host mounts.
+services:
+  fhirflare-standalone:
+    image: ${FHIRFLARE_IMAGE:-ghcr.io/sudo-jhare/fhirflare-ig-toolkit-standalone:latest}
+    container_name: fhirflare-standalone
+    ports:
+      - "5000:5000"
+      - "8080:8080"
+    volumes:
+      - fhirflare-instance:/app/instance
+      - fhirflare-uploads:/app/static/uploads
+      - fhirflare-h2-data:/app/h2-data
+      - fhirflare-logs:/app/logs
+    restart: unless-stopped
+
+volumes:
+  fhirflare-instance:
+  fhirflare-uploads:
+  fhirflare-h2-data:
+  fhirflare-logs:

docker-compose/all-in-one/down.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Stop and remove all containers defined in the Docker Compose file,
+# along with any anonymous volumes attached to them.
+docker compose down --volumes

docker-compose/all-in-one/up.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Run Docker Compose
+
+docker compose up --detach --force-recreate --renew-anon-volumes --always-recreate-deps

docker-compose/lite/local/application.yaml

@@ -0,0 +1,18 @@
+hapi.fhir:
+  ig_runtime_upload_enabled: false
+  narrative_enabled: true
+  logical_urls:
+    - http://terminology.hl7.org/*
+    - https://terminology.hl7.org/*
+    - http://snomed.info/*
+    - https://snomed.info/*
+    - http://unitsofmeasure.org/*
+    - https://unitsofmeasure.org/*
+    - http://loinc.org/*
+    - https://loinc.org/*
+  cors:
+    allow_Credentials: true
+    allowed_origin:
+      - '*'
+  tester.home.name: FHIRFLARE Tester
+  inline_resource_storage_below_size: 4000

docker-compose/lite/local/docker-compose.yml

@@ -0,0 +1,50 @@
+services:
+  fhirflare:
+    image: ${FHIRFLARE_IMAGE:-ghcr.io/sudo-jhare/fhirflare-ig-toolkit-lite:latest}
+    ports:
+      - "5000:5000"
+    # Ephemeral Docker named volumes for all data storage. No data is stored on the host filesystem.
+    volumes:
+      - fhirflare-instance:/app/instance
+      - fhirflare-uploads:/app/static/uploads
+      - fhirflare-h2-data:/app/h2-data
+      - fhirflare-logs:/app/logs
+    environment:
+      - FLASK_APP=app.py
+      - FLASK_ENV=development
+      - NODE_PATH=/usr/lib/node_modules
+      - APP_MODE=lite
+      - APP_BASE_URL=http://localhost:5000
+      - HAPI_FHIR_URL=http://fhir:8080/fhir
+    command: supervisord -c /etc/supervisord.conf
+
+  fhir:
+    container_name: hapi
+    image: "hapiproject/hapi:v8.2.0-1"
+    ports:
+      - "8080:8080"
+    configs:
+      - source: hapi
+        target: /app/config/application.yaml
+    depends_on:
+      - db
+
+  db:
+    image: "postgres:17.2-bookworm"
+    restart: always
+    environment:
+      POSTGRES_PASSWORD: admin
+      POSTGRES_USER: admin
+      POSTGRES_DB: hapi
+    volumes:
+      - ./hapi.postgress.data:/var/lib/postgresql/data
+
+configs:
+  hapi:
+     file: ./application.yaml
+
+volumes:
+  fhirflare-instance:
+  fhirflare-uploads:
+  fhirflare-h2-data:
+  fhirflare-logs:

docker-compose/lite/local/down.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Stop and remove all containers defined in the Docker Compose file,
+# along with any anonymous volumes attached to them.
+docker compose down --volumes

docker-compose/lite/local/readme.md

@@ -0,0 +1,19 @@
+# FHIRFLARE IG Toolkit
+
+This directory provides scripts and configuration to start and stop a FHIRFLARE instance with an attached HAPI FHIR server using Docker Compose.
+
+## Usage
+
+- To start the FHIRFLARE toolkit and HAPI server:
+  ```sh
+  ./docker-compose/up.sh
+  ```
+
+- To stop and remove the containers and volumes:
+  ```sh
+  ./docker-compose/down.sh
+  ```
+
+The web interface will be available at [http://localhost:5000](http://localhost:5000) and the HAPI FHIR server at [http://localhost:8080/fhir](http://localhost:8080/fhir).
+
+For more details, see the configuration files in this directory.

docker-compose/lite/local/up.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Run Docker Compose
+
+docker compose up --detach --force-recreate --renew-anon-volumes --always-recreate-deps

docker-compose/lite/remote/docker-compose.yml

@@ -0,0 +1,25 @@
+services:
+  fhirflare:
+    image: ${FHIRFLARE_IMAGE:-ghcr.io/sudo-jhare/fhirflare-ig-toolkit-lite:latest}
+    ports:
+      - "5000:5000"
+    # Ephemeral Docker named volumes for all data storage. No data is stored on the host filesystem.
+    volumes:
+      - fhirflare-instance:/app/instance
+      - fhirflare-uploads:/app/static/uploads
+      - fhirflare-h2-data:/app/h2-data
+      - fhirflare-logs:/app/logs
+    environment:
+      - FLASK_APP=app.py
+      - FLASK_ENV=development
+      - NODE_PATH=/usr/lib/node_modules
+      - APP_MODE=lite
+      - APP_BASE_URL=http://localhost:5000
+      - HAPI_FHIR_URL=https://cdr.fhirlab.net/fhir
+    command: supervisord -c /etc/supervisord.conf
+
+volumes:
+  fhirflare-instance:
+  fhirflare-uploads:
+  fhirflare-h2-data:
+  fhirflare-logs:

docker-compose/lite/remote/down.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Stop and remove all containers defined in the Docker Compose file,
+# along with any anonymous volumes attached to them.
+docker compose down --volumes

docker-compose/lite/remote/readme.md

@@ -0,0 +1,19 @@
+# FHIRFLARE IG Toolkit
+
+This directory provides scripts and configuration to start and stop a FHIRFLARE instance with an attached HAPI FHIR server using Docker Compose.
+
+## Usage
+
+- To start the FHIRFLARE toolkit and HAPI server:
+  ```sh
+  ./docker-compose/up.sh
+  ```
+
+- To stop and remove the containers and volumes:
+  ```sh
+  ./docker-compose/down.sh
+  ```
+
+The web interface will be available at [http://localhost:5000](http://localhost:5000) and the HAPI FHIR server at [http://localhost:8080/fhir](http://localhost:8080/fhir).
+
+For more details, see the configuration files in this directory.

docker-compose/lite/remote/up.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Run Docker Compose
+
+docker compose up --detach --force-recreate --renew-anon-volumes --always-recreate-deps

docker/Dockerfile

@@ -0,0 +1,66 @@
+# ------------------------------------------------------------------------------
+# Dockerfile for FHIRFLARE-IG-Toolkit (Optimized for Python/Flask)
+#
+# This Dockerfile builds a container for the FHIRFLARE-IG-Toolkit application.
+#
+# Key Features:
+# - Uses python:3.11-slim as the base image for a minimal, secure Python runtime.
+# - Installs Node.js and global NPM packages (gofsh, fsh-sushi) for FHIR IG tooling.
+# - Sets up a Python virtual environment and installs all Python dependencies.
+# - Installs and configures Supervisor to manage the Flask app and related processes.
+# - Copies all necessary application code, templates, static files, and configuration.
+# - Exposes ports 5000 (Flask) and 8080 (optional, for compatibility).
+# - Entrypoint runs Supervisor for process management.
+#
+# Notes:
+# - The Dockerfile is optimized for Python. Tomcat/Java is not included.
+# - Node.js is only installed if needed for FHIR IG tooling.
+# - The image is suitable for development and production with minimal changes.
+# ------------------------------------------------------------------------------
+
+# Optimized Dockerfile for Python (Flask)
+FROM python:3.11-slim AS base
+
+# Install system dependencies
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    curl \
+    coreutils \
+    && rm -rf /var/lib/apt/lists/*
+
+# Optional: Install Node.js if needed for GoFSH/SUSHI
+RUN curl -fsSL https://deb.nodesource.com/setup_18.x | bash - \
+    && apt-get install -y --no-install-recommends nodejs \
+    && npm install -g gofsh fsh-sushi \
+    && rm -rf /var/lib/apt/lists/*
+
+# Set workdir
+WORKDIR /app
+
+# Copy requirements and install Python dependencies
+COPY requirements.txt .
+RUN python -m venv /app/venv \
+    && . /app/venv/bin/activate \
+    && pip install --upgrade pip \
+    && pip install --no-cache-dir -r requirements.txt \
+    && pip uninstall -y fhirpath || true \
+    && pip install --no-cache-dir fhirpathpy \
+    && pip install supervisor
+
+# Copy application files
+COPY app.py .
+COPY services.py .
+COPY forms.py .
+COPY package.py .
+COPY templates/ templates/
+COPY static/ static/
+COPY tests/ tests/
+COPY supervisord.conf /etc/supervisord.conf
+
+# Expose ports
+EXPOSE 5000 8080
+
+# Set environment
+ENV PATH="/app/venv/bin:$PATH"
+
+# Start supervisord
+CMD ["supervisord", "-c", "/etc/supervisord.conf"]

docker/build-docker.sh

@@ -0,0 +1,7 @@
+#!/bin/bash
+# Build FHIRFLARE-IG-Toolkit Docker image
+
+# Build the image using the Dockerfile in the docker directory
+docker build -f Dockerfile -t fhirflare-ig-toolkit:latest ..
+
+echo "Docker image built successfully"

hapi-fhir-Setup/README.md

@@ -1,111 +0,0 @@
-# Application Build and Run Guide - MANUAL STEPS
-
-This guide outlines the steps to set up, build, and run the application, including the HAPI FHIR server component and the rest of the application managed via Docker Compose.
-
-## Prerequisites
-
-Before you begin, ensure you have the following installed on your system:
-
-* [Git](https://git-scm.com/)
-* [Maven](https://maven.apache.org/)
-* [Java Development Kit (JDK)](https://www.oracle.com/java/technologies/downloads/) (Ensure compatibility with the HAPI FHIR version)
-* [Docker](https://www.docker.com/products/docker-desktop/)
-* [Docker Compose](https://docs.docker.com/compose/install/) (Often included with Docker Desktop)
-
-## Setup and Build
-
-Follow these steps to clone the necessary repository and build the components.
-
-### 1. Clone and Build the HAPI FHIR Server
-
-First, clone the HAPI FHIR JPA Server Starter project and build the server application.
-
-
-# Step 1: Clone the repository
-git clone https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git hapi-fhir-jpaserver hapi-fhir-jpaserver
-
-# Navigate into the cloned directory
-cd hapi-fhir-jpaserver
-
-copy the folder from hapi-fhir-setup/target/classes/application.yaml to the hapi-fhir-jpaserver/target/classes/application.yaml folder created above
-
-# Step 2: Build the HAPI server package (skipping tests, using 'boot' profile)
-# This creates the runnable WAR file in the 'target/' directory
-mvn clean package -DskipTests=true -Pboot
-
-# Return to the parent directory (or your project root)
-cd ..
-2. Build the Rest of the Application (Docker)
-Next, build the Docker images for the remaining parts of the application as defined in your docker-compose.yml file. Run this command from the root directory where your docker-compose.yml file is located.
-
-
-
-# Step 3: Build Docker images without using cache
-docker-compose build --no-cache
-Running the Application
-Option A: Running the Full Application (Recommended)
-Use Docker Compose to start all services, including (presumably) the HAPI FHIR server if it's configured in your docker-compose.yml. Run this from the root directory containing your docker-compose.yml.
-
-
-
-# Step 4: Start all services defined in docker-compose.yml in detached mode
-docker-compose up -d
-Option B: Running the HAPI FHIR Server Standalone (Debugging Only)
-This method runs only the HAPI FHIR server directly using the built WAR file. Use this primarily for debugging the server in isolation.
-
-
-
-# Navigate into the HAPI server directory where you built it
-cd hapi-fhir-jpaserver
-
-# Run the WAR file directly using Java
-java -jar target/ROOT.war
-
-# Note: You might need to configure ports or database connections
-# separately when running this way, depending on the application's needs.
-
-# Remember to navigate back when done
-# cd ..
-Useful Docker Commands
-Here are some helpful commands for interacting with your running Docker containers:
-
-Copying files from a container:
-To copy a file from a running container to your local machine's current directory:
-
-
-
-# Syntax: docker cp <CONTAINER_ID_OR_NAME>:<PATH_IN_CONTAINER> <LOCAL_DESTINATION_PATH>
-docker cp <CONTAINER_ID>:/app/PATH/Filename.ext .
-(Replace <CONTAINER_ID>, /app/PATH/Filename.ext with actual values. . refers to the current directory on your host machine.)
-
-Accessing a container's shell:
-To get an interactive bash shell inside a running container:
-
-
-
-# Syntax: docker exec -it <CONTAINER_ID_OR_NAME> bash
-docker exec -it <CONTAINER_ID> bash
-(Replace <CONTAINER_ID> with the actual container ID or name. You can find this using docker ps.)
-
-Viewing running containers:
-
-
-
-docker ps
-Viewing application logs:
-
-
-
-# Follow logs for all services
-docker-compose logs -f
-
-# Follow logs for a specific service
-docker-compose logs -f <SERVICE_NAME>
-(Replace <SERVICE_NAME> with the name defined in your docker-compose.yml)
-
-Stopping the application:
-To stop the services started with docker-compose up -d:
-
-
-
-docker-compose down

hapi-fhir-Setup/target/classes/application.yaml

@@ -1,342 +0,0 @@
-#Uncomment the "servlet" and "context-path" lines below to make the fhir endpoint available at /example/path/fhir instead of the default value of /fhir
-server:
-  #  servlet:
-  #    context-path: /example/path
-  port: 8080
-#Adds the option to go to eg. http://localhost:8080/actuator/health for seeing the running configuration
-#see https://docs.spring.io/spring-boot/docs/current/reference/html/actuator.html#actuator.endpoints
-management:
-  #The following configuration will enable the actuator endpoints at /actuator/health, /actuator/info, /actuator/prometheus, /actuator/metrics. For security purposes, only /actuator/health is enabled by default.
-  endpoints:
-    enabled-by-default: false
-    web:
-      exposure:
-        include: 'health' # or e.g. 'info,health,prometheus,metrics' or '*' for all'
-  endpoint:
-    info:
-      enabled: true
-    metrics:
-      enabled: true
-    health:
-      enabled: true
-      probes:
-        enabled: true
-      group:
-        liveness:
-          include:
-            - livenessState
-            - readinessState
-    prometheus:
-      enabled: true
-  prometheus:
-    metrics:
-      export:
-        enabled: true
-spring:
-  main:
-    allow-circular-references: true
-  flyway:
-    enabled: false
-    baselineOnMigrate: true
-    fail-on-missing-locations: false
-  datasource:
-    #url: 'jdbc:h2:file:./target/database/h2'
-    url: jdbc:h2:file:/app/h2-data/fhir;DB_CLOSE_DELAY=-1;AUTO_SERVER=TRUE
-    #url: jdbc:h2:mem:test_mem
-    username: sa
-    password: null
-    driverClassName: org.h2.Driver
-    max-active: 15
-
-    # database connection pool size
-    hikari:
-      maximum-pool-size: 10
-  jpa:
-    properties:
-      hibernate.format_sql: false
-      hibernate.show_sql: false
-
-      #Hibernate dialect is automatically detected except Postgres and H2.
-      #If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
-      #If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgresDialect
-      hibernate.dialect: ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect
-  #      hibernate.hbm2ddl.auto: update
-  #      hibernate.jdbc.batch_size: 20
-  #      hibernate.cache.use_query_cache: false
-  #      hibernate.cache.use_second_level_cache: false
-  #      hibernate.cache.use_structured_entries: false
-  #      hibernate.cache.use_minimal_puts: false
-
-  ###    These settings will enable fulltext search with lucene or elastic
-      hibernate.search.enabled: false
-  ### lucene parameters
-#      hibernate.search.backend.type: lucene
-#      hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer
-#      hibernate.search.backend.directory.type: local-filesystem
-#      hibernate.search.backend.directory.root: target/lucenefiles
-#      hibernate.search.backend.lucene_version: lucene_current
-  ### elastic parameters ===> see also elasticsearch section below <===
-#      hibernate.search.backend.type: elasticsearch
-#      hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer
-hapi:
-  fhir:
-    ### This flag when enabled to true, will avail evaluate measure operations from CR Module.
-    ### Flag is false by default, can be passed as command line argument to override.
-    cr:
-      enabled: false
-      caregaps:
-        reporter: "default"
-        section_author: "default"
-      cql:
-        use_embedded_libraries: true
-        compiler:
-          ### These are low-level compiler options.
-          ### They are not typically needed by most users.
-          # validate_units: true
-          # verify_only: false
-          # compatibility_level: "1.5"
-          error_level: Info
-          signature_level: All
-          # analyze_data_requirements: false
-          # collapse_data_requirements: false
-          # translator_format: JSON
-          # enable_date_range_optimization: true
-          enable_annotations: true
-          enable_locators: true
-          enable_results_type: true
-          enable_detailed_errors: true
-          # disable_list_traversal: false
-          # disable_list_demotion: false
-          # enable_interval_demotion: false
-          # enable_interval_promotion: false
-          # disable_method_invocation: false
-          # require_from_keyword: false
-          # disable_default_model_info_load: false
-        runtime:
-          debug_logging_enabled: false
-          # enable_validation: false
-          # enable_expression_caching: true
-        terminology:
-          valueset_preexpansion_mode: REQUIRE # USE_IF_PRESENT, REQUIRE, IGNORE
-          valueset_expansion_mode: PERFORM_NAIVE_EXPANSION # AUTO, USE_EXPANSION_OPERATION, PERFORM_NAIVE_EXPANSION
-          valueset_membership_mode: USE_EXPANSION # AUTO, USE_VALIDATE_CODE_OPERATION, USE_EXPANSION
-          code_lookup_mode: USE_VALIDATE_CODE_OPERATION # AUTO, USE_VALIDATE_CODE_OPERATION, USE_CODESYSTEM_URL
-        data:
-          search_parameter_mode: USE_SEARCH_PARAMETERS # AUTO, USE_SEARCH_PARAMETERS, FILTER_IN_MEMORY
-          terminology_parameter_mode: FILTER_IN_MEMORY #  AUTO, USE_VALUE_SET_URL, USE_INLINE_CODES, FILTER_IN_MEMORY
-          profile_mode: DECLARED # ENFORCED, DECLARED, OPTIONAL, TRUST, OFF
-
-    cdshooks:
-      enabled: false
-      clientIdHeaderName: client_id
-
-    ### This enables the swagger-ui at /fhir/swagger-ui/index.html as well as the /fhir/api-docs (see https://hapifhir.io/hapi-fhir/docs/server_plain/openapi.html)
-    openapi_enabled: true
-    ### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5
-    fhir_version: R4
-    ### Flag is false by default. This flag enables runtime installation of IG's.
-    ig_runtime_upload_enabled: false
-    ### This flag when enabled to true, will avail evaluate measure operations from CR Module.
-
-    ### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers
-    ### to determine the FHIR server address
-    #   use_apache_address_strategy: false
-    ### forces the use of the https:// protocol for the returned server address.
-    ### alternatively, it may be set using the X-Forwarded-Proto header.
-    #   use_apache_address_strategy_https: false
-    ### enables the server to overwrite defaults on HTML, css, etc. under the url pattern of eg. /content/custom **
-    ### Folder with custom content MUST be named custom. If omitted then default content applies
-    custom_content_path: ./custom
-    ### enables the server host custom content. If e.g. the value ./configs/app is supplied then the content
-    ### will be served under /web/app
-    #app_content_path: ./configs/app
-    ### enable to set the Server URL
-    #    server_address: http://hapi.fhir.org/baseR4
-    #    defer_indexing_for_codesystems_of_size: 101
-    ### Flag is true by default. This flag filters resources during package installation, allowing only those resources with a valid status (e.g. active) to be installed.
-    #    validate_resource_status_for_package_upload: false 
-    #    install_transitive_ig_dependencies: true
-    #implementationguides:
-    ###    example from registry (packages.fhir.org)
-    #  swiss:
-    #    name: swiss.mednet.fhir
-    #    version: 0.8.0
-    #    reloadExisting: false
-    #    installMode: STORE_AND_INSTALL
-    #      example not from registry
-    #      ips_1_0_0:
-    #        packageUrl: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz
-    #        name: hl7.fhir.uv.ips
-    #        version: 1.0.0
-    #    supported_resource_types:
-    #      - Patient
-    #      - Observation
-    ##################################################
-    # Allowed Bundle Types for persistence (defaults are: COLLECTION,DOCUMENT,MESSAGE)
-    ##################################################
-    #    allowed_bundle_types: COLLECTION,DOCUMENT,MESSAGE,TRANSACTION,TRANSACTIONRESPONSE,BATCH,BATCHRESPONSE,HISTORY,SEARCHSET
-    #    allow_cascading_deletes: true
-    #    allow_contains_searches: true
-    #    allow_external_references: true
-    #    allow_multiple_delete: true
-    #    allow_override_default_search_params: true
-    #    auto_create_placeholder_reference_targets: false
-    #    mass_ingestion_mode_enabled: false
-    ### tells the server to automatically append the current version of the target resource to references at these paths
-    #    auto_version_reference_at_paths: Device.patient, Device.location, Device.parent, DeviceMetric.parent, DeviceMetric.source, Observation.device, Observation.subject
-    #    ips_enabled: false
-    #    default_encoding: JSON
-    #    default_pretty_print: true
-    #    default_page_size: 20
-    #    delete_expunge_enabled: true
-    #    enable_repository_validating_interceptor: true
-    #    enable_index_missing_fields: false
-    #    enable_index_of_type: true
-    #    enable_index_contained_resource: false
-    #    upliftedRefchains_enabled: true
-    #    resource_dbhistory_enabled: false
-    ###  !!Extended Lucene/Elasticsearch Indexing is still a experimental feature, expect some features (e.g. _total=accurate) to not work as expected!!
-    ###  more information here: https://hapifhir.io/hapi-fhir/docs/server_jpa/elastic.html
-    advanced_lucene_indexing: false
-    bulk_export_enabled: false
-    bulk_import_enabled: false
-    #    language_search_parameter_enabled: true
-    #    enforce_referential_integrity_on_delete: false
-    # This is an experimental feature, and does not fully support _total and other FHIR features.
-    #    enforce_referential_integrity_on_delete: false
-    #    enforce_referential_integrity_on_write: false
-    #    etag_support_enabled: true
-    #    expunge_enabled: true
-    #    client_id_strategy: ALPHANUMERIC
-    #    server_id_strategy: SEQUENTIAL_NUMERIC
-    #    fhirpath_interceptor_enabled: false
-    #    filter_search_enabled: true
-    #    graphql_enabled: true
-    narrative_enabled: true
-    mdm_enabled: false
-    mdm_rules_json_location: "mdm-rules.json"
-    ##  see: https://hapifhir.io/hapi-fhir/docs/interceptors/built_in_server_interceptors.html#jpa-server-retry-on-version-conflicts
-    #    userRequestRetryVersionConflictsInterceptorEnabled : false
-    #    local_base_urls:
-    #      - https://hapi.fhir.org/baseR4
-    #    pre_expand_value_sets: true
-    #  enable_task_pre_expand_value_sets: true
-    #    pre_expand_value_sets_default_count: 1000
-    #    pre_expand_value_sets_max_count: 1000
-    #    maximum_expansion_size: 1000
-
-    logical_urls:
-      - http://terminology.hl7.org/*
-      - https://terminology.hl7.org/*
-      - http://snomed.info/*
-      - https://snomed.info/*
-      - http://unitsofmeasure.org/*
-      - https://unitsofmeasure.org/*
-      - http://loinc.org/*
-      - https://loinc.org/*
-    #    partitioning:
-    #      allow_references_across_partitions: false
-    #      partitioning_include_in_search_hashes: false
-    #      conditional_create_duplicate_identifiers_enabled: false
-    cors:
-      allow_Credentials: true
-      # These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List-
-      allowed_origin:
-        - '*'
-
-    # Search coordinator thread pool sizes
-    search-coord-core-pool-size: 20
-    search-coord-max-pool-size: 100
-    search-coord-queue-capacity: 200
-
-    # Search Prefetch Thresholds.
-
-    # This setting sets the number of search results to prefetch. For example, if this list
-    # is set to [100, 1000, -1] then the server will initially load 100 results and not
-    # attempt to load more. If the user requests subsequent page(s) of results and goes
-    # past 100 results, the system will load the next 900 (up to the following threshold of 1000).
-    # The system will progressively work through these thresholds.
-    # A threshold of -1 means to load all results. Note that if the final threshold is a
-    # number other than -1, the system will never prefetch more than the given number.
-    search_prefetch_thresholds: 13,503,2003,-1
-
-    # comma-separated package names, will be @ComponentScan'ed by Spring to allow for creating custom Spring beans
-    #custom-bean-packages:
-    
-    # comma-separated list of fully qualified interceptor classes. 
-    # classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages', 
-    # or will be instantiated via reflection using an no-arg contructor; then registered with the server  
-    #custom-interceptor-classes:  
-
-    # comma-separated list of fully qualified provider classes. 
-    # classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages', 
-    # or will be instantiated via reflection using an no-arg contructor; then registered with the server  
-    #custom-provider-classes:  
-    
-    # Threadpool size for BATCH'ed GETs in a bundle.
-    #    bundle_batch_pool_size: 10
-    #    bundle_batch_pool_max_size: 50
-
-    #    logger:
-    #      error_format: 'ERROR - ${requestVerb} ${requestUrl}'
-    #      format: >-
-    #        Path[${servletPath}] Source[${requestHeader.x-forwarded-for}]
-    #        Operation[${operationType} ${operationName} ${idOrResourceName}]
-    #        UA[${requestHeader.user-agent}] Params[${requestParameters}]
-    #        ResponseEncoding[${responseEncodingNoDefault}]
-    #      log_exceptions: true
-    #      name: fhirtest.access
-    #    max_binary_size: 104857600
-    #    max_page_size: 200
-    #    retain_cached_searches_mins: 60
-    #    reuse_cached_search_results_millis: 60000
-    tester:
-      home:
-        name: FHIRFLARE Tester
-        server_address: http://localhost:8080/fhir
-        refuse_to_fetch_third_party_urls: false
-        fhir_version: R4
-      global:
-        name: Global Tester
-        server_address: "http://hapi.fhir.org/baseR4"
-        refuse_to_fetch_third_party_urls: false
-        fhir_version: R4
-    #    validation:
-    #      requests_enabled: true
-    #      responses_enabled: true
-    #    binary_storage_enabled: true
-    inline_resource_storage_below_size: 4000
-#    bulk_export_enabled: true
-#    subscription:
-#      resthook_enabled: true
-#      websocket_enabled: false
-#      polling_interval_ms: 5000
-#      immediately_queued: false
-#      email:
-#        from: some@test.com
-#        host: google.com
-#        port:
-#        username:
-#        password:
-#        auth:
-#        startTlsEnable:
-#        startTlsRequired:
-#        quitWait:
-#    lastn_enabled: true
-#    store_resource_in_lucene_index_enabled: true
-###  This is configuration for normalized quantity search level default is 0
-###   0: NORMALIZED_QUANTITY_SEARCH_NOT_SUPPORTED - default
-###   1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED
-###   2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED
-#    normalized_quantity_search_level: 2
-#elasticsearch:
-#  debug:
-#    pretty_print_json_log: false
-#    refresh_after_write: false
-#  enabled: false
-#  password: SomePassword
-#  required_index_status: YELLOW
-#  rest_url: 'localhost:9200'
-#  protocol: 'http'
-#  schema_management_strategy: CREATE
-#  username: SomeUsername

instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.metadata.json

@@ -1,42 +0,0 @@
-{
-  "package_name": "example.fhir.ph.core.r4",
-  "version": "0.1.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.terminology.r4",
-      "version": "6.4.0"
-    },
-    {
-      "name": "hl7.fhir.uv.extensions.r4",
-      "version": "5.2.0"
-    },
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.fhir.uv.extensions.r4",
-      "version": "5.2.0"
-    },
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-08-01T00:48:13.000931+00:00"
-}

instance/fhir_packages/hl7.fhir.au.base-5.1.0-preview.metadata.json

@@ -1,22 +0,0 @@
-{
-  "package_name": "hl7.fhir.au.base",
-  "version": "5.1.0-preview",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.terminology.r4",
-      "version": "6.2.0"
-    },
-    {
-      "name": "hl7.fhir.uv.extensions.r4",
-      "version": "5.2.0"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:17.475734+00:00"
-}

instance/fhir_packages/hl7.fhir.au.core-1.1.0-preview.metadata.json

@@ -1,34 +0,0 @@
-{
-  "package_name": "hl7.fhir.au.core",
-  "version": "1.1.0-preview",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.terminology.r4",
-      "version": "6.2.0"
-    },
-    {
-      "name": "hl7.fhir.uv.extensions.r4",
-      "version": "5.2.0"
-    },
-    {
-      "name": "hl7.fhir.au.base",
-      "version": "5.1.0-preview"
-    },
-    {
-      "name": "hl7.fhir.uv.smart-app-launch",
-      "version": "2.1.0"
-    },
-    {
-      "name": "hl7.fhir.uv.ipa",
-      "version": "1.0.0"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:15.067826+00:00"
-}

instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json

@@ -1,9 +0,0 @@
-{
-  "package_name": "hl7.fhir.r4.core",
-  "version": "4.0.1",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-08-01T00:48:12.995792+00:00"
-}

instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json

@@ -1,14 +0,0 @@
-{
-  "package_name": "hl7.fhir.uv.extensions.r4",
-  "version": "5.2.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-08-01T00:48:12.196313+00:00"
-}

instance/fhir_packages/hl7.fhir.uv.ipa-1.0.0.metadata.json

@@ -1,22 +0,0 @@
-{
-  "package_name": "hl7.fhir.uv.ipa",
-  "version": "1.0.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.terminology.r4",
-      "version": "5.0.0"
-    },
-    {
-      "name": "hl7.fhir.uv.smart-app-launch",
-      "version": "2.0.0"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:17.590266+00:00"
-}

instance/fhir_packages/hl7.fhir.uv.smart-app-launch-2.0.0.metadata.json

@@ -1,14 +0,0 @@
-{
-  "package_name": "hl7.fhir.uv.smart-app-launch",
-  "version": "2.0.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:18.256800+00:00"
-}

instance/fhir_packages/hl7.fhir.uv.smart-app-launch-2.1.0.metadata.json

@@ -1,18 +0,0 @@
-{
-  "package_name": "hl7.fhir.uv.smart-app-launch",
-  "version": "2.1.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.terminology.r4",
-      "version": "5.0.0"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:17.529611+00:00"
-}

instance/fhir_packages/hl7.terminology.r4-5.0.0.metadata.json

@@ -1,14 +0,0 @@
-{
-  "package_name": "hl7.terminology.r4",
-  "version": "5.0.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:18.216757+00:00"
-}

instance/fhir_packages/hl7.terminology.r4-6.2.0.metadata.json

@@ -1,14 +0,0 @@
-{
-  "package_name": "hl7.terminology.r4",
-  "version": "6.2.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:17.148041+00:00"
-}

instance/fhir_packages/hl7.terminology.r4-6.4.0.metadata.json

@@ -1,22 +0,0 @@
-{
-  "package_name": "hl7.terminology.r4",
-  "version": "6.4.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.fhir.uv.extensions.r4",
-      "version": "5.2.0"
-    },
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-08-01T00:48:11.281867+00:00"
-}

instance/fhirflare_debug.log

@@ -1,740 +0,0 @@
-2025-08-01 00:44:39,706 - __main__ - INFO - --- File logging initialized to /app/instance/fhirflare_debug.log (Level: DEBUG) ---
-2025-08-01 00:44:39,707 - __main__ - INFO - Application running in mode: standalone
-2025-08-01 00:44:39,708 - __main__ - DEBUG - Instance path configuration: /app/instance
-2025-08-01 00:44:39,709 - __main__ - DEBUG - Database URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,710 - __main__ - DEBUG - Packages path: /app/instance/fhir_packages
-2025-08-01 00:44:39,724 - __main__ - DEBUG - Flask instance folder path: /app/instance
-2025-08-01 00:44:39,731 - __main__ - DEBUG - Directories created/verified: Instance: /app/instance, Packages: /app/instance/fhir_packages
-2025-08-01 00:44:39,759 - __main__ - DEBUG - Attempting to create database tables for URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,797 - __main__ - INFO - Database tables created/verified successfully.
-2025-08-01 00:44:39,804 - __main__ - DEBUG - Instance path configuration: /app/instance
-2025-08-01 00:44:39,806 - __main__ - DEBUG - Database URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,807 - __main__ - DEBUG - Packages path: /app/instance/fhir_packages
-2025-08-01 00:44:39,808 - __main__ - DEBUG - Flask instance folder path: /app/instance
-2025-08-01 00:44:39,811 - __main__ - DEBUG - Directories created/verified: Instance: /app/instance, Packages: /app/instance/fhir_packages
-2025-08-01 00:44:39,812 - __main__ - DEBUG - Attempting to create database tables for URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,822 - __main__ - INFO - Database tables created successfully (if they didn't exist).
-2025-08-01 00:44:39,825 - werkzeug - INFO - WARNING: This is a development server. Do not use it in a production deployment. Use a production WSGI server instead.
- * Running on all addresses (0.0.0.0)
- * Running on http://127.0.0.1:5000
- * Running on http://172.18.0.2:5000
-2025-08-01 00:44:39,826 - werkzeug - INFO - Press CTRL+C to quit
-2025-08-01 00:45:00,413 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET / HTTP/1.1" 200 -
-2025-08-01 00:45:00,466 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/FHIRFLARE.png HTTP/1.1" 200 -
-2025-08-01 00:45:00,481 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:00,493 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:45:00,539 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:01,469 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:01] "GET /static/favicon.ico HTTP/1.1" 200 -
-2025-08-01 00:45:06,325 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:45:06,344 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:06,348 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:06,349 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:18,005 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /validate-sample HTTP/1.1" 200 -
-2025-08-01 00:47:18,023 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:18,026 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:18,030 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:18,034 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:47:27,948 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:47:27,969 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:27,970 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:27,972 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:43,826 - services - INFO - Starting manual import for /tmp/tmpo2f3s9g5/example.fhir.ph.core.r4-0.1.0.tgz (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:43,827 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:43,831 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:47:43,841 - services - DEBUG - Parsed '/tmp/tmpo2f3s9g5/example.fhir.ph.core.r4-0.1.0.tgz' -> name='/tmp/tmpo2f3s9g5/example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:47:43,842 - services - INFO - Manually processing package: example.fhir.ph.core.r4-0.1.0.tgz (/tmp/tmpo2f3s9g5/example.fhir.ph.core.r4#0.1.0)
-2025-08-01 00:47:43,843 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:43,844 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:43,845 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:43,848 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:43,850 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:43,852 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:43,853 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:44,379 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:44,388 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:44,389 - services - INFO - Processing dependency hl7.terminology.r4#6.4.0
-2025-08-01 00:47:44,390 - services - INFO - Starting manual import for hl7.terminology.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:44,391 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:44,393 - services - INFO - Attempting manual download of hl7.terminology.r4#6.4.0
-2025-08-01 00:47:44,398 - urllib3.connectionpool - DEBUG - Starting new HTTPS connection (1): packages.fhir.org:443
-2025-08-01 00:47:46,170 - urllib3.connectionpool - DEBUG - https://packages.fhir.org:443 "GET /hl7.terminology.r4/6.4.0 HTTP/1.1" 200 5053901
-2025-08-01 00:47:49,116 - services - INFO - Manually downloaded hl7.terminology.r4#6.4.0 to /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz
-2025-08-01 00:47:49,118 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz' -> name='/app/instance/fhir.packages/hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:47:49,119 - services - INFO - Manually processing package: hl7.terminology.r4-6.4.0.tgz (/app/instance/fhir.packages/hl7.terminology.r4#6.4.0)
-2025-08-01 00:47:49,132 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,133 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,133 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,135 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,136 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:49,138 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:49,138 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:49,396 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,401 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:49,401 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:49,402 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,402 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,403 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:49,404 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:47:49,406 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:49,406 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:47:49,461 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,462 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,462 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,464 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,465 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:49,466 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:49,466 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:49,731 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,735 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:49,736 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,740 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:47:49,740 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,741 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,741 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,743 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,745 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:49,746 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:49,747 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,011 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,014 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,015 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,018 - services - INFO - Saved metadata for hl7.terminology.r4#6.4.0 at /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.metadata.json
-2025-08-01 00:47:50,019 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,019 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,019 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,020 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,021 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:47:50,022 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:50,023 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:47:50,079 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,080 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,081 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,082 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,083 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,083 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:50,084 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,353 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,357 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,358 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,364 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:47:50,364 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,365 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,365 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,366 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,367 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,368 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:50,369 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,631 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,634 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,634 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,635 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,636 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,637 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,638 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:47:50,639 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:50,639 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:47:50,694 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,695 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,695 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,697 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,697 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,698 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:50,699 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,986 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,989 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,990 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,993 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:47:50,994 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,994 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,995 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,997 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,998 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,999 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:51,000 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:51,247 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,250 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:51,251 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,252 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:51,252 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,253 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,254 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:51,255 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:51,255 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:51,509 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,512 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:51,513 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,513 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:51,514 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,515 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,516 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:51,518 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:51,518 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:51,779 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,782 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:51,783 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,790 - services - INFO - Saved metadata for example.fhir.ph.core.r4#0.1.0 at /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.metadata.json
-2025-08-01 00:47:51,792 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:51] "POST /manual-import-ig HTTP/1.1" 302 -
-2025-08-01 00:47:51,808 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
-2025-08-01 00:47:51,811 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:47:51,819 - services - DEBUG - Parsed 'hl7.fhir.au.base-5.1.0-preview.tgz' -> name='hl7.fhir.au.base', version='5.1.0-preview'
-2025-08-01 00:47:51,846 - services - DEBUG - Parsed 'hl7.fhir.au.core-1.1.0-preview.tgz' -> name='hl7.fhir.au.core', version='1.1.0-preview'
-2025-08-01 00:47:51,863 - services - DEBUG - Parsed 'hl7.fhir.r4.core-4.0.1.tgz' -> name='hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:52,313 - services - DEBUG - Parsed 'hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:52,375 - services - DEBUG - Parsed 'hl7.fhir.uv.ipa-1.0.0.tgz' -> name='hl7.fhir.uv.ipa', version='1.0.0'
-2025-08-01 00:47:52,384 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.0.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.0.0'
-2025-08-01 00:47:52,387 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.1.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.1.0'
-2025-08-01 00:47:52,391 - services - DEBUG - Parsed 'hl7.terminology.r4-5.0.0.tgz' -> name='hl7.terminology.r4', version='5.0.0'
-2025-08-01 00:47:52,627 - services - DEBUG - Parsed 'hl7.terminology.r4-6.2.0.tgz' -> name='hl7.terminology.r4', version='6.2.0'
-2025-08-01 00:47:52,920 - services - DEBUG - Parsed 'hl7.terminology.r4-6.4.0.tgz' -> name='hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:47:53,250 - __main__ - DEBUG - Found packages: 11
-2025-08-01 00:47:53,250 - __main__ - DEBUG - Errors during package listing: []
-2025-08-01 00:47:53,251 - __main__ - DEBUG - Duplicate groups: {'hl7.fhir.uv.smart-app-launch': ['2.0.0', '2.1.0'], 'hl7.terminology.r4': ['5.0.0', '6.2.0', '6.4.0']}
-2025-08-01 00:47:53,269 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /view-igs HTTP/1.1" 200 -
-2025-08-01 00:47:53,299 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:53,301 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:53,304 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:47:53,307 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:55,256 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:47:55,270 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:55,272 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:55,275 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:48:09,986 - services - INFO - Starting manual import for /tmp/tmpa5kg6gav/example.fhir.ph.core.r4-0.1.0.tgz (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:09,987 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:09,989 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:48:09,995 - services - DEBUG - Parsed '/tmp/tmpa5kg6gav/example.fhir.ph.core.r4-0.1.0.tgz' -> name='/tmp/tmpa5kg6gav/example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:48:09,996 - services - INFO - Manually processing package: example.fhir.ph.core.r4-0.1.0.tgz (/tmp/tmpa5kg6gav/example.fhir.ph.core.r4#0.1.0)
-2025-08-01 00:48:09,997 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:09,997 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:09,997 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:09,998 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,000 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:10,002 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:10,003 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:10,319 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,323 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:10,324 - services - INFO - Processing dependency hl7.terminology.r4#6.4.0
-2025-08-01 00:48:10,324 - services - INFO - Starting manual import for hl7.terminology.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,324 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,325 - services - INFO - Attempting manual download of hl7.terminology.r4#6.4.0
-2025-08-01 00:48:10,326 - services - INFO - Manual package hl7.terminology.r4#6.4.0 already exists at /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz
-2025-08-01 00:48:10,327 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz' -> name='/app/instance/fhir.packages/hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:48:10,328 - services - INFO - Manually processing package: hl7.terminology.r4-6.4.0.tgz (/app/instance/fhir.packages/hl7.terminology.r4#6.4.0)
-2025-08-01 00:48:10,330 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,330 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,331 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,332 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,334 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:10,336 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:10,336 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:10,586 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,590 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:10,590 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:10,591 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,591 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,593 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:10,594 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:48:10,595 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:10,596 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:48:10,655 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,655 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,656 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,657 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,659 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:10,660 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:10,661 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:10,997 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,004 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,005 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,008 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:48:11,009 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,010 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,011 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,012 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,014 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,016 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,016 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:11,275 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,279 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,280 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,283 - services - INFO - Saved metadata for hl7.terminology.r4#6.4.0 at /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.metadata.json
-2025-08-01 00:48:11,284 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,285 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,285 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,287 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,288 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:48:11,289 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:11,289 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:48:11,344 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,345 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,345 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,346 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,347 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,348 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,349 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:11,601 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,605 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,605 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,609 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:48:11,610 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,610 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,611 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,613 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,614 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,615 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,616 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:11,867 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,871 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,871 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,872 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,872 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,874 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,875 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:48:11,876 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:11,877 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:48:11,932 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,932 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,933 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,935 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,936 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,937 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,937 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,191 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,194 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,194 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,198 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:48:12,199 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,200 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:12,201 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,202 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,203 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:12,205 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:12,205 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,451 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,456 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,456 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,457 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:12,457 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,458 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,459 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:12,460 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:12,461 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,720 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,723 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,724 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,724 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:12,725 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,726 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,727 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:12,728 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:12,728 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,994 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,997 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,998 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:13,003 - services - INFO - Saved metadata for example.fhir.ph.core.r4#0.1.0 at /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.metadata.json
-2025-08-01 00:48:13,004 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:13] "POST /manual-import-ig HTTP/1.1" 302 -
-2025-08-01 00:48:13,014 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
-2025-08-01 00:48:13,016 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:48:13,023 - services - DEBUG - Parsed 'hl7.fhir.au.base-5.1.0-preview.tgz' -> name='hl7.fhir.au.base', version='5.1.0-preview'
-2025-08-01 00:48:13,047 - services - DEBUG - Parsed 'hl7.fhir.au.core-1.1.0-preview.tgz' -> name='hl7.fhir.au.core', version='1.1.0-preview'
-2025-08-01 00:48:13,064 - services - DEBUG - Parsed 'hl7.fhir.r4.core-4.0.1.tgz' -> name='hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:13,486 - services - DEBUG - Parsed 'hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:13,543 - services - DEBUG - Parsed 'hl7.fhir.uv.ipa-1.0.0.tgz' -> name='hl7.fhir.uv.ipa', version='1.0.0'
-2025-08-01 00:48:13,551 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.0.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.0.0'
-2025-08-01 00:48:13,554 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.1.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.1.0'
-2025-08-01 00:48:13,558 - services - DEBUG - Parsed 'hl7.terminology.r4-5.0.0.tgz' -> name='hl7.terminology.r4', version='5.0.0'
-2025-08-01 00:48:13,743 - services - DEBUG - Parsed 'hl7.terminology.r4-6.2.0.tgz' -> name='hl7.terminology.r4', version='6.2.0'
-2025-08-01 00:48:13,974 - services - DEBUG - Parsed 'hl7.terminology.r4-6.4.0.tgz' -> name='hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:48:14,164 - __main__ - DEBUG - Found packages: 11
-2025-08-01 00:48:14,165 - __main__ - DEBUG - Errors during package listing: []
-2025-08-01 00:48:14,166 - __main__ - DEBUG - Duplicate groups: {'hl7.fhir.uv.smart-app-launch': ['2.0.0', '2.1.0'], 'hl7.terminology.r4': ['5.0.0', '6.2.0', '6.4.0']}
-2025-08-01 00:48:14,169 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /view-igs HTTP/1.1" 200 -
-2025-08-01 00:48:14,185 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:14,187 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:48:14,188 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:14,189 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:48:19,052 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /validate-sample HTTP/1.1" 200 -
-2025-08-01 00:48:19,067 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:19,068 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:19,069 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:48:19,071 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:50:33,336 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:50:33,337 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:50:33,337 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:50:33,339 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:50:34,754 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:50:34,995 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:50:34,997 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:50:34] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:50:35,010 - services - DEBUG - Received validate-sample request
-2025-08-01 00:50:35,011 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=13970
-2025-08-01 00:50:35,012 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,014 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,017 - services - DEBUG - Validating Bundle against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:50:35,017 - services - DEBUG - Validating bundle against example.fhir.ph.core.r4#0.1.0, include_dependencies=True
-2025-08-01 00:50:35,018 - services - DEBUG - Found 14 local references in the bundle.
-2025-08-01 00:50:35,019 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,021 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient
-2025-08-01 00:50:35,022 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,027 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,028 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient'
-2025-08-01 00:50:35,039 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,040 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' at path: package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:50:35,042 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:50:35,043 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:50:35,046 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:50:35,048 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:50:35,050 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:50:35,052 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:50:35,054 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:50:35,055 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,057 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,059 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter
-2025-08-01 00:50:35,060 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,065 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,066 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter'
-2025-08-01 00:50:35,071 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,073 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' at path: package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:50:35,074 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:50:35,075 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:50:35,077 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:50:35,078 - services - DEBUG - Navigating FHIR path: Encounter.status, extension_url=None
-2025-08-01 00:50:35,079 - services - DEBUG - Navigating FHIR path: Encounter.class, extension_url=None
-2025-08-01 00:50:35,081 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,082 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,083 - services - DEBUG - No profile in resource, using base type as identifier: Condition
-2025-08-01 00:50:35,084 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,088 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,090 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,106 - services - INFO - SD matching identifier 'Condition' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,108 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:50:35,112 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:50:35,113 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:50:35,116 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:50:35,117 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,182 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-Condition.json
-2025-08-01 00:50:35,184 - services - DEBUG - Found SD at package/StructureDefinition-Condition.json
-2025-08-01 00:50:35,185 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:50:35,186 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:50:35,187 - services - DEBUG - Navigating FHIR path: Condition.subject, extension_url=None
-2025-08-01 00:50:35,188 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,190 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,192 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication
-2025-08-01 00:50:35,192 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,196 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,197 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication'
-2025-08-01 00:50:35,204 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,206 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' at path: package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:50:35,207 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:50:35,207 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:50:35,209 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:50:35,210 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,211 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,213 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation
-2025-08-01 00:50:35,214 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,217 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,218 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation'
-2025-08-01 00:50:35,224 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,225 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' at path: package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:50:35,226 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:50:35,227 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:50:35,228 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:50:35,229 - services - DEBUG - Navigating FHIR path: Observation.status, extension_url=None
-2025-08-01 00:50:35,230 - services - DEBUG - Navigating FHIR path: Observation.code, extension_url=None
-2025-08-01 00:50:35,231 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,232 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,233 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:50:35,234 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,237 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,238 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,250 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,252 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:50:35,255 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:50:35,256 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:50:35,259 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:50:35,259 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,710 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:50:35,711 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:50:35,712 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:50:35,713 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:50:35,713 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:50:35,714 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,715 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,716 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner
-2025-08-01 00:50:35,716 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,719 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,719 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner'
-2025-08-01 00:50:35,727 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,728 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' at path: package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:50:35,729 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:50:35,729 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:50:35,730 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:50:35,731 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,731 - services - DEBUG - Bundle validation result: valid=True, errors=0, warnings=0, resources=7
-2025-08-01 00:50:35,732 - services - INFO - Validation result for Bundle against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,732 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:50:35] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:51:28,784 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:51:28,825 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:28,828 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:28,839 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:51:39,832 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
-2025-08-01 00:51:39,838 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:51:39,851 - services - DEBUG - Parsed 'hl7.fhir.au.base-5.1.0-preview.tgz' -> name='hl7.fhir.au.base', version='5.1.0-preview'
-2025-08-01 00:51:39,892 - services - DEBUG - Parsed 'hl7.fhir.au.core-1.1.0-preview.tgz' -> name='hl7.fhir.au.core', version='1.1.0-preview'
-2025-08-01 00:51:39,918 - services - DEBUG - Parsed 'hl7.fhir.r4.core-4.0.1.tgz' -> name='hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:51:40,732 - services - DEBUG - Parsed 'hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:51:40,837 - services - DEBUG - Parsed 'hl7.fhir.uv.ipa-1.0.0.tgz' -> name='hl7.fhir.uv.ipa', version='1.0.0'
-2025-08-01 00:51:40,855 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.0.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.0.0'
-2025-08-01 00:51:40,860 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.1.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.1.0'
-2025-08-01 00:51:40,868 - services - DEBUG - Parsed 'hl7.terminology.r4-5.0.0.tgz' -> name='hl7.terminology.r4', version='5.0.0'
-2025-08-01 00:51:41,223 - services - DEBUG - Parsed 'hl7.terminology.r4-6.2.0.tgz' -> name='hl7.terminology.r4', version='6.2.0'
-2025-08-01 00:51:41,669 - services - DEBUG - Parsed 'hl7.terminology.r4-6.4.0.tgz' -> name='hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:51:42,069 - __main__ - DEBUG - Found packages: 11
-2025-08-01 00:51:42,070 - __main__ - DEBUG - Errors during package listing: []
-2025-08-01 00:51:42,071 - __main__ - DEBUG - Duplicate groups: {'hl7.fhir.uv.smart-app-launch': ['2.0.0', '2.1.0'], 'hl7.terminology.r4': ['5.0.0', '6.2.0', '6.4.0']}
-2025-08-01 00:51:42,075 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /view-igs HTTP/1.1" 200 -
-2025-08-01 00:51:42,100 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:42,103 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:42,108 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:51:42,108 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:54:20,189 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /validate-sample HTTP/1.1" 200 -
-2025-08-01 00:54:20,209 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:54:20,212 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:54:20,216 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:54:20,218 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:54:39,350 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:54:39,351 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:54:39,353 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:54:39,356 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:54:39,413 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:54:39,611 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:54:39,613 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:39] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:54:39,639 - services - DEBUG - Received validate-sample request
-2025-08-01 00:54:39,641 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=13970
-2025-08-01 00:54:39,643 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,647 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,650 - services - DEBUG - Validating Bundle against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:54:39,652 - services - DEBUG - Validating bundle against example.fhir.ph.core.r4#0.1.0, include_dependencies=True
-2025-08-01 00:54:39,653 - services - DEBUG - Found 14 local references in the bundle.
-2025-08-01 00:54:39,655 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,659 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient
-2025-08-01 00:54:39,660 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,668 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,670 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient'
-2025-08-01 00:54:39,688 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,689 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' at path: package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:54:39,692 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:54:39,693 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:54:39,695 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:54:39,697 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:54:39,700 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:54:39,702 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:54:39,705 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:54:39,708 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,710 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,714 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter
-2025-08-01 00:54:39,715 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,724 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,725 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter'
-2025-08-01 00:54:39,734 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,736 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' at path: package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:54:39,739 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:54:39,740 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:54:39,742 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:54:39,744 - services - DEBUG - Navigating FHIR path: Encounter.status, extension_url=None
-2025-08-01 00:54:39,746 - services - DEBUG - Navigating FHIR path: Encounter.class, extension_url=None
-2025-08-01 00:54:39,747 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,749 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,753 - services - DEBUG - No profile in resource, using base type as identifier: Condition
-2025-08-01 00:54:39,755 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,764 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,766 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:39,791 - services - INFO - SD matching identifier 'Condition' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,794 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:54:39,799 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:54:39,803 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:54:39,808 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:54:39,810 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:39,902 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-Condition.json
-2025-08-01 00:54:39,904 - services - DEBUG - Found SD at package/StructureDefinition-Condition.json
-2025-08-01 00:54:39,905 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:54:39,907 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:54:39,908 - services - DEBUG - Navigating FHIR path: Condition.subject, extension_url=None
-2025-08-01 00:54:39,910 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,911 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,914 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication
-2025-08-01 00:54:39,915 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,923 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,924 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication'
-2025-08-01 00:54:39,934 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,936 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' at path: package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:54:39,938 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:54:39,939 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:54:39,940 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:54:39,942 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,943 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,945 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation
-2025-08-01 00:54:39,946 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,952 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,953 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation'
-2025-08-01 00:54:39,964 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,966 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' at path: package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:54:39,968 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:54:39,969 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:54:39,970 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:54:39,971 - services - DEBUG - Navigating FHIR path: Observation.status, extension_url=None
-2025-08-01 00:54:39,973 - services - DEBUG - Navigating FHIR path: Observation.code, extension_url=None
-2025-08-01 00:54:39,975 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,976 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,980 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:54:39,981 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,988 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,990 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:40,015 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:40,017 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:54:40,022 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:54:40,024 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:54:40,028 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:54:40,029 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:41,057 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:54:41,059 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:54:41,060 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:54:41,061 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:54:41,063 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:54:41,065 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:41,066 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:41,070 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner
-2025-08-01 00:54:41,071 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:41,077 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:41,078 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner'
-2025-08-01 00:54:41,096 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:41,098 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' at path: package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:54:41,100 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:54:41,101 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:54:41,103 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:54:41,105 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:41,106 - services - DEBUG - Bundle validation result: valid=True, errors=0, warnings=0, resources=7
-2025-08-01 00:54:41,107 - services - INFO - Validation result for Bundle against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:54:41,109 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:41] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:55:46,274 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:55:46,275 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:55:46,276 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:55:46,278 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:55:46,303 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:55:46,409 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:55:46,411 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:55:46] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:55:46,425 - services - DEBUG - Received validate-sample request
-2025-08-01 00:55:46,427 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:55:46,428 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:55:46,431 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,434 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:55:46,435 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:55:46,438 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:55:46,439 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,445 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,446 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:55:46,468 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,470 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:55:46,475 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:55:46,477 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:55:46,481 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:55:46,482 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:55:47,472 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:55:47,474 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:55:47,474 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:55:47,476 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:55:47,477 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:55:47,479 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:55:47,480 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:55:47,481 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:55:47] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:56:01,610 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:56:01,611 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:56:01,612 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:56:01,614 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:56:01,634 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:56:01,712 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:56:01,714 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:01] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:56:01,726 - services - DEBUG - Received validate-sample request
-2025-08-01 00:56:01,727 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:56:01,728 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:01,731 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,733 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:56:01,735 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:01,738 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:56:01,739 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,743 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,744 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:01,759 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,761 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:56:01,764 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:56:01,766 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:56:01,770 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:56:01,771 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:02,425 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:02,427 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:02,428 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:02,430 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:02,431 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:56:02,433 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:56:02,434 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:56:02,435 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:02] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:56:14,054 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:56:14,055 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:56:14,056 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:56:14,057 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:56:14,070 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:56:14,147 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:56:14,149 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:14] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:56:14,157 - services - DEBUG - Received validate-sample request
-2025-08-01 00:56:14,158 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:56:14,160 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:14,163 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,166 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:56:14,166 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:14,170 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:56:14,172 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,177 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,178 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:14,193 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,195 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:56:14,197 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:56:14,198 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:56:14,201 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:56:14,202 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:14,875 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:14,877 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:14,878 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:14,879 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:14,881 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:56:14,883 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:56:14,884 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:56:14,885 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:14] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:56:18,236 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:56:18,237 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:56:18,238 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:56:18,239 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:56:18,257 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:56:18,348 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:56:18,350 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:18] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:56:18,364 - services - DEBUG - Received validate-sample request
-2025-08-01 00:56:18,366 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:56:18,366 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:18,369 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,373 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:56:18,374 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:18,377 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:56:18,378 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,383 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,384 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:18,401 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,403 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:56:18,406 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:56:18,408 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:56:18,412 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:56:18,413 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:19,183 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:19,184 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:19,185 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:19,186 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:19,187 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:56:19,189 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:56:19,190 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:56:19,191 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:19] "POST /api/validate-sample HTTP/1.1" 200 -

instance/hapi-h2-data/fhir.lock.db

@@ -1,6 +0,0 @@
-#FileLock
-#Fri Aug 01 00:44:59 UTC 2025
-server=172.18.0.2\:44371
-hostName=fd26f32c4551
-method=file
-id=1986316d3912ca2c5021ee56e639ff5ae831929a5f0

logs/flask.log

@@ -1,2 +0,0 @@
- * Serving Flask app 'app'
- * Debug mode: off

logs/flask_err.log

@@ -1,741 +0,0 @@
-fhir.resources library failed to import. XML parsing will be basic and dependency analysis for XML may be incomplete. Error: No module named 'fhir.resources.fhirtypesvalidators'
-2025-08-01 00:44:39,706 - __main__ - INFO - --- File logging initialized to /app/instance/fhirflare_debug.log (Level: DEBUG) ---
-2025-08-01 00:44:39,707 - __main__ - INFO - Application running in mode: standalone
-2025-08-01 00:44:39,708 - __main__ - DEBUG - Instance path configuration: /app/instance
-2025-08-01 00:44:39,709 - __main__ - DEBUG - Database URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,710 - __main__ - DEBUG - Packages path: /app/instance/fhir_packages
-2025-08-01 00:44:39,724 - __main__ - DEBUG - Flask instance folder path: /app/instance
-2025-08-01 00:44:39,731 - __main__ - DEBUG - Directories created/verified: Instance: /app/instance, Packages: /app/instance/fhir_packages
-2025-08-01 00:44:39,759 - __main__ - DEBUG - Attempting to create database tables for URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,797 - __main__ - INFO - Database tables created/verified successfully.
-2025-08-01 00:44:39,804 - __main__ - DEBUG - Instance path configuration: /app/instance
-2025-08-01 00:44:39,806 - __main__ - DEBUG - Database URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,807 - __main__ - DEBUG - Packages path: /app/instance/fhir_packages
-2025-08-01 00:44:39,808 - __main__ - DEBUG - Flask instance folder path: /app/instance
-2025-08-01 00:44:39,811 - __main__ - DEBUG - Directories created/verified: Instance: /app/instance, Packages: /app/instance/fhir_packages
-2025-08-01 00:44:39,812 - __main__ - DEBUG - Attempting to create database tables for URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,822 - __main__ - INFO - Database tables created successfully (if they didn't exist).
-2025-08-01 00:44:39,825 - werkzeug - INFO - WARNING: This is a development server. Do not use it in a production deployment. Use a production WSGI server instead.
- * Running on all addresses (0.0.0.0)
- * Running on http://127.0.0.1:5000
- * Running on http://172.18.0.2:5000
-2025-08-01 00:44:39,826 - werkzeug - INFO - Press CTRL+C to quit
-2025-08-01 00:45:00,413 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET / HTTP/1.1" 200 -
-2025-08-01 00:45:00,466 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/FHIRFLARE.png HTTP/1.1" 200 -
-2025-08-01 00:45:00,481 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:00,493 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:45:00,539 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:01,469 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:01] "GET /static/favicon.ico HTTP/1.1" 200 -
-2025-08-01 00:45:06,325 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:45:06,344 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:06,348 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:06,349 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:18,005 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /validate-sample HTTP/1.1" 200 -
-2025-08-01 00:47:18,023 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:18,026 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:18,030 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:18,034 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:47:27,948 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:47:27,969 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:27,970 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:27,972 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:43,826 - services - INFO - Starting manual import for /tmp/tmpo2f3s9g5/example.fhir.ph.core.r4-0.1.0.tgz (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:43,827 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:43,831 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:47:43,841 - services - DEBUG - Parsed '/tmp/tmpo2f3s9g5/example.fhir.ph.core.r4-0.1.0.tgz' -> name='/tmp/tmpo2f3s9g5/example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:47:43,842 - services - INFO - Manually processing package: example.fhir.ph.core.r4-0.1.0.tgz (/tmp/tmpo2f3s9g5/example.fhir.ph.core.r4#0.1.0)
-2025-08-01 00:47:43,843 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:43,844 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:43,845 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:43,848 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:43,850 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:43,852 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:43,853 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:44,379 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:44,388 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:44,389 - services - INFO - Processing dependency hl7.terminology.r4#6.4.0
-2025-08-01 00:47:44,390 - services - INFO - Starting manual import for hl7.terminology.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:44,391 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:44,393 - services - INFO - Attempting manual download of hl7.terminology.r4#6.4.0
-2025-08-01 00:47:44,398 - urllib3.connectionpool - DEBUG - Starting new HTTPS connection (1): packages.fhir.org:443
-2025-08-01 00:47:46,170 - urllib3.connectionpool - DEBUG - https://packages.fhir.org:443 "GET /hl7.terminology.r4/6.4.0 HTTP/1.1" 200 5053901
-2025-08-01 00:47:49,116 - services - INFO - Manually downloaded hl7.terminology.r4#6.4.0 to /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz
-2025-08-01 00:47:49,118 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz' -> name='/app/instance/fhir.packages/hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:47:49,119 - services - INFO - Manually processing package: hl7.terminology.r4-6.4.0.tgz (/app/instance/fhir.packages/hl7.terminology.r4#6.4.0)
-2025-08-01 00:47:49,132 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,133 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,133 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,135 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,136 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:49,138 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:49,138 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:49,396 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,401 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:49,401 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:49,402 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,402 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,403 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:49,404 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:47:49,406 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:49,406 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:47:49,461 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,462 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,462 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,464 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,465 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:49,466 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:49,466 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:49,731 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,735 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:49,736 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,740 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:47:49,740 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,741 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,741 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,743 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,745 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:49,746 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:49,747 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,011 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,014 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,015 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,018 - services - INFO - Saved metadata for hl7.terminology.r4#6.4.0 at /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.metadata.json
-2025-08-01 00:47:50,019 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,019 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,019 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,020 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,021 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:47:50,022 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:50,023 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:47:50,079 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,080 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,081 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,082 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,083 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,083 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:50,084 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,353 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,357 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,358 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,364 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:47:50,364 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,365 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,365 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,366 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,367 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,368 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:50,369 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,631 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,634 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,634 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,635 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,636 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,637 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,638 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:47:50,639 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:50,639 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:47:50,694 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,695 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,695 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,697 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,697 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,698 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:50,699 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,986 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,989 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,990 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,993 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:47:50,994 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,994 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,995 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,997 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,998 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,999 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:51,000 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:51,247 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,250 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:51,251 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,252 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:51,252 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,253 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,254 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:51,255 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:51,255 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:51,509 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,512 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:51,513 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,513 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:51,514 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,515 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,516 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:51,518 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:51,518 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:51,779 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,782 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:51,783 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,790 - services - INFO - Saved metadata for example.fhir.ph.core.r4#0.1.0 at /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.metadata.json
-2025-08-01 00:47:51,792 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:51] "POST /manual-import-ig HTTP/1.1" 302 -
-2025-08-01 00:47:51,808 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
-2025-08-01 00:47:51,811 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:47:51,819 - services - DEBUG - Parsed 'hl7.fhir.au.base-5.1.0-preview.tgz' -> name='hl7.fhir.au.base', version='5.1.0-preview'
-2025-08-01 00:47:51,846 - services - DEBUG - Parsed 'hl7.fhir.au.core-1.1.0-preview.tgz' -> name='hl7.fhir.au.core', version='1.1.0-preview'
-2025-08-01 00:47:51,863 - services - DEBUG - Parsed 'hl7.fhir.r4.core-4.0.1.tgz' -> name='hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:52,313 - services - DEBUG - Parsed 'hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:52,375 - services - DEBUG - Parsed 'hl7.fhir.uv.ipa-1.0.0.tgz' -> name='hl7.fhir.uv.ipa', version='1.0.0'
-2025-08-01 00:47:52,384 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.0.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.0.0'
-2025-08-01 00:47:52,387 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.1.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.1.0'
-2025-08-01 00:47:52,391 - services - DEBUG - Parsed 'hl7.terminology.r4-5.0.0.tgz' -> name='hl7.terminology.r4', version='5.0.0'
-2025-08-01 00:47:52,627 - services - DEBUG - Parsed 'hl7.terminology.r4-6.2.0.tgz' -> name='hl7.terminology.r4', version='6.2.0'
-2025-08-01 00:47:52,920 - services - DEBUG - Parsed 'hl7.terminology.r4-6.4.0.tgz' -> name='hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:47:53,250 - __main__ - DEBUG - Found packages: 11
-2025-08-01 00:47:53,250 - __main__ - DEBUG - Errors during package listing: []
-2025-08-01 00:47:53,251 - __main__ - DEBUG - Duplicate groups: {'hl7.fhir.uv.smart-app-launch': ['2.0.0', '2.1.0'], 'hl7.terminology.r4': ['5.0.0', '6.2.0', '6.4.0']}
-2025-08-01 00:47:53,269 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /view-igs HTTP/1.1" 200 -
-2025-08-01 00:47:53,299 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:53,301 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:53,304 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:47:53,307 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:55,256 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:47:55,270 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:55,272 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:55,275 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:48:09,986 - services - INFO - Starting manual import for /tmp/tmpa5kg6gav/example.fhir.ph.core.r4-0.1.0.tgz (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:09,987 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:09,989 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:48:09,995 - services - DEBUG - Parsed '/tmp/tmpa5kg6gav/example.fhir.ph.core.r4-0.1.0.tgz' -> name='/tmp/tmpa5kg6gav/example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:48:09,996 - services - INFO - Manually processing package: example.fhir.ph.core.r4-0.1.0.tgz (/tmp/tmpa5kg6gav/example.fhir.ph.core.r4#0.1.0)
-2025-08-01 00:48:09,997 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:09,997 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:09,997 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:09,998 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,000 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:10,002 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:10,003 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:10,319 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,323 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:10,324 - services - INFO - Processing dependency hl7.terminology.r4#6.4.0
-2025-08-01 00:48:10,324 - services - INFO - Starting manual import for hl7.terminology.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,324 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,325 - services - INFO - Attempting manual download of hl7.terminology.r4#6.4.0
-2025-08-01 00:48:10,326 - services - INFO - Manual package hl7.terminology.r4#6.4.0 already exists at /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz
-2025-08-01 00:48:10,327 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz' -> name='/app/instance/fhir.packages/hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:48:10,328 - services - INFO - Manually processing package: hl7.terminology.r4-6.4.0.tgz (/app/instance/fhir.packages/hl7.terminology.r4#6.4.0)
-2025-08-01 00:48:10,330 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,330 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,331 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,332 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,334 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:10,336 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:10,336 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:10,586 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,590 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:10,590 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:10,591 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,591 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,593 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:10,594 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:48:10,595 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:10,596 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:48:10,655 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,655 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,656 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,657 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,659 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:10,660 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:10,661 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:10,997 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,004 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,005 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,008 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:48:11,009 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,010 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,011 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,012 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,014 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,016 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,016 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:11,275 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,279 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,280 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,283 - services - INFO - Saved metadata for hl7.terminology.r4#6.4.0 at /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.metadata.json
-2025-08-01 00:48:11,284 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,285 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,285 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,287 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,288 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:48:11,289 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:11,289 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:48:11,344 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,345 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,345 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,346 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,347 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,348 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,349 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:11,601 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,605 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,605 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,609 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:48:11,610 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,610 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,611 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,613 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,614 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,615 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,616 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:11,867 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,871 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,871 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,872 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,872 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,874 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,875 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:48:11,876 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:11,877 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:48:11,932 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,932 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,933 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,935 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,936 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,937 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,937 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,191 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,194 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,194 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,198 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:48:12,199 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,200 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:12,201 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,202 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,203 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:12,205 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:12,205 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,451 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,456 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,456 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,457 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:12,457 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,458 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,459 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:12,460 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:12,461 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,720 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,723 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,724 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,724 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:12,725 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,726 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,727 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:12,728 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:12,728 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,994 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,997 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,998 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:13,003 - services - INFO - Saved metadata for example.fhir.ph.core.r4#0.1.0 at /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.metadata.json
-2025-08-01 00:48:13,004 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:13] "POST /manual-import-ig HTTP/1.1" 302 -
-2025-08-01 00:48:13,014 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
-2025-08-01 00:48:13,016 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:48:13,023 - services - DEBUG - Parsed 'hl7.fhir.au.base-5.1.0-preview.tgz' -> name='hl7.fhir.au.base', version='5.1.0-preview'
-2025-08-01 00:48:13,047 - services - DEBUG - Parsed 'hl7.fhir.au.core-1.1.0-preview.tgz' -> name='hl7.fhir.au.core', version='1.1.0-preview'
-2025-08-01 00:48:13,064 - services - DEBUG - Parsed 'hl7.fhir.r4.core-4.0.1.tgz' -> name='hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:13,486 - services - DEBUG - Parsed 'hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:13,543 - services - DEBUG - Parsed 'hl7.fhir.uv.ipa-1.0.0.tgz' -> name='hl7.fhir.uv.ipa', version='1.0.0'
-2025-08-01 00:48:13,551 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.0.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.0.0'
-2025-08-01 00:48:13,554 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.1.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.1.0'
-2025-08-01 00:48:13,558 - services - DEBUG - Parsed 'hl7.terminology.r4-5.0.0.tgz' -> name='hl7.terminology.r4', version='5.0.0'
-2025-08-01 00:48:13,743 - services - DEBUG - Parsed 'hl7.terminology.r4-6.2.0.tgz' -> name='hl7.terminology.r4', version='6.2.0'
-2025-08-01 00:48:13,974 - services - DEBUG - Parsed 'hl7.terminology.r4-6.4.0.tgz' -> name='hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:48:14,164 - __main__ - DEBUG - Found packages: 11
-2025-08-01 00:48:14,165 - __main__ - DEBUG - Errors during package listing: []
-2025-08-01 00:48:14,166 - __main__ - DEBUG - Duplicate groups: {'hl7.fhir.uv.smart-app-launch': ['2.0.0', '2.1.0'], 'hl7.terminology.r4': ['5.0.0', '6.2.0', '6.4.0']}
-2025-08-01 00:48:14,169 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /view-igs HTTP/1.1" 200 -
-2025-08-01 00:48:14,185 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:14,187 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:48:14,188 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:14,189 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:48:19,052 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /validate-sample HTTP/1.1" 200 -
-2025-08-01 00:48:19,067 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:19,068 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:19,069 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:48:19,071 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:50:33,336 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:50:33,337 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:50:33,337 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:50:33,339 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:50:34,754 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:50:34,995 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:50:34,997 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:50:34] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:50:35,010 - services - DEBUG - Received validate-sample request
-2025-08-01 00:50:35,011 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=13970
-2025-08-01 00:50:35,012 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,014 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,017 - services - DEBUG - Validating Bundle against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:50:35,017 - services - DEBUG - Validating bundle against example.fhir.ph.core.r4#0.1.0, include_dependencies=True
-2025-08-01 00:50:35,018 - services - DEBUG - Found 14 local references in the bundle.
-2025-08-01 00:50:35,019 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,021 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient
-2025-08-01 00:50:35,022 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,027 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,028 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient'
-2025-08-01 00:50:35,039 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,040 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' at path: package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:50:35,042 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:50:35,043 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:50:35,046 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:50:35,048 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:50:35,050 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:50:35,052 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:50:35,054 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:50:35,055 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,057 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,059 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter
-2025-08-01 00:50:35,060 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,065 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,066 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter'
-2025-08-01 00:50:35,071 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,073 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' at path: package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:50:35,074 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:50:35,075 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:50:35,077 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:50:35,078 - services - DEBUG - Navigating FHIR path: Encounter.status, extension_url=None
-2025-08-01 00:50:35,079 - services - DEBUG - Navigating FHIR path: Encounter.class, extension_url=None
-2025-08-01 00:50:35,081 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,082 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,083 - services - DEBUG - No profile in resource, using base type as identifier: Condition
-2025-08-01 00:50:35,084 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,088 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,090 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,106 - services - INFO - SD matching identifier 'Condition' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,108 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:50:35,112 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:50:35,113 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:50:35,116 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:50:35,117 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,182 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-Condition.json
-2025-08-01 00:50:35,184 - services - DEBUG - Found SD at package/StructureDefinition-Condition.json
-2025-08-01 00:50:35,185 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:50:35,186 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:50:35,187 - services - DEBUG - Navigating FHIR path: Condition.subject, extension_url=None
-2025-08-01 00:50:35,188 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,190 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,192 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication
-2025-08-01 00:50:35,192 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,196 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,197 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication'
-2025-08-01 00:50:35,204 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,206 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' at path: package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:50:35,207 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:50:35,207 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:50:35,209 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:50:35,210 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,211 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,213 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation
-2025-08-01 00:50:35,214 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,217 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,218 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation'
-2025-08-01 00:50:35,224 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,225 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' at path: package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:50:35,226 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:50:35,227 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:50:35,228 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:50:35,229 - services - DEBUG - Navigating FHIR path: Observation.status, extension_url=None
-2025-08-01 00:50:35,230 - services - DEBUG - Navigating FHIR path: Observation.code, extension_url=None
-2025-08-01 00:50:35,231 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,232 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,233 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:50:35,234 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,237 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,238 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,250 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,252 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:50:35,255 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:50:35,256 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:50:35,259 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:50:35,259 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,710 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:50:35,711 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:50:35,712 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:50:35,713 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:50:35,713 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:50:35,714 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,715 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,716 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner
-2025-08-01 00:50:35,716 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,719 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,719 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner'
-2025-08-01 00:50:35,727 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,728 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' at path: package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:50:35,729 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:50:35,729 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:50:35,730 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:50:35,731 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,731 - services - DEBUG - Bundle validation result: valid=True, errors=0, warnings=0, resources=7
-2025-08-01 00:50:35,732 - services - INFO - Validation result for Bundle against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,732 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:50:35] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:51:28,784 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:51:28,825 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:28,828 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:28,839 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:51:39,832 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
-2025-08-01 00:51:39,838 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:51:39,851 - services - DEBUG - Parsed 'hl7.fhir.au.base-5.1.0-preview.tgz' -> name='hl7.fhir.au.base', version='5.1.0-preview'
-2025-08-01 00:51:39,892 - services - DEBUG - Parsed 'hl7.fhir.au.core-1.1.0-preview.tgz' -> name='hl7.fhir.au.core', version='1.1.0-preview'
-2025-08-01 00:51:39,918 - services - DEBUG - Parsed 'hl7.fhir.r4.core-4.0.1.tgz' -> name='hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:51:40,732 - services - DEBUG - Parsed 'hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:51:40,837 - services - DEBUG - Parsed 'hl7.fhir.uv.ipa-1.0.0.tgz' -> name='hl7.fhir.uv.ipa', version='1.0.0'
-2025-08-01 00:51:40,855 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.0.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.0.0'
-2025-08-01 00:51:40,860 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.1.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.1.0'
-2025-08-01 00:51:40,868 - services - DEBUG - Parsed 'hl7.terminology.r4-5.0.0.tgz' -> name='hl7.terminology.r4', version='5.0.0'
-2025-08-01 00:51:41,223 - services - DEBUG - Parsed 'hl7.terminology.r4-6.2.0.tgz' -> name='hl7.terminology.r4', version='6.2.0'
-2025-08-01 00:51:41,669 - services - DEBUG - Parsed 'hl7.terminology.r4-6.4.0.tgz' -> name='hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:51:42,069 - __main__ - DEBUG - Found packages: 11
-2025-08-01 00:51:42,070 - __main__ - DEBUG - Errors during package listing: []
-2025-08-01 00:51:42,071 - __main__ - DEBUG - Duplicate groups: {'hl7.fhir.uv.smart-app-launch': ['2.0.0', '2.1.0'], 'hl7.terminology.r4': ['5.0.0', '6.2.0', '6.4.0']}
-2025-08-01 00:51:42,075 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /view-igs HTTP/1.1" 200 -
-2025-08-01 00:51:42,100 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:42,103 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:42,108 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:51:42,108 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:54:20,189 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /validate-sample HTTP/1.1" 200 -
-2025-08-01 00:54:20,209 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:54:20,212 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:54:20,216 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:54:20,218 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:54:39,350 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:54:39,351 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:54:39,353 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:54:39,356 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:54:39,413 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:54:39,611 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:54:39,613 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:39] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:54:39,639 - services - DEBUG - Received validate-sample request
-2025-08-01 00:54:39,641 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=13970
-2025-08-01 00:54:39,643 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,647 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,650 - services - DEBUG - Validating Bundle against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:54:39,652 - services - DEBUG - Validating bundle against example.fhir.ph.core.r4#0.1.0, include_dependencies=True
-2025-08-01 00:54:39,653 - services - DEBUG - Found 14 local references in the bundle.
-2025-08-01 00:54:39,655 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,659 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient
-2025-08-01 00:54:39,660 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,668 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,670 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient'
-2025-08-01 00:54:39,688 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,689 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' at path: package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:54:39,692 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:54:39,693 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:54:39,695 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:54:39,697 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:54:39,700 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:54:39,702 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:54:39,705 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:54:39,708 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,710 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,714 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter
-2025-08-01 00:54:39,715 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,724 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,725 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter'
-2025-08-01 00:54:39,734 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,736 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' at path: package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:54:39,739 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:54:39,740 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:54:39,742 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:54:39,744 - services - DEBUG - Navigating FHIR path: Encounter.status, extension_url=None
-2025-08-01 00:54:39,746 - services - DEBUG - Navigating FHIR path: Encounter.class, extension_url=None
-2025-08-01 00:54:39,747 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,749 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,753 - services - DEBUG - No profile in resource, using base type as identifier: Condition
-2025-08-01 00:54:39,755 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,764 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,766 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:39,791 - services - INFO - SD matching identifier 'Condition' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,794 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:54:39,799 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:54:39,803 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:54:39,808 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:54:39,810 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:39,902 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-Condition.json
-2025-08-01 00:54:39,904 - services - DEBUG - Found SD at package/StructureDefinition-Condition.json
-2025-08-01 00:54:39,905 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:54:39,907 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:54:39,908 - services - DEBUG - Navigating FHIR path: Condition.subject, extension_url=None
-2025-08-01 00:54:39,910 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,911 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,914 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication
-2025-08-01 00:54:39,915 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,923 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,924 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication'
-2025-08-01 00:54:39,934 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,936 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' at path: package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:54:39,938 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:54:39,939 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:54:39,940 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:54:39,942 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,943 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,945 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation
-2025-08-01 00:54:39,946 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,952 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,953 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation'
-2025-08-01 00:54:39,964 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,966 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' at path: package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:54:39,968 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:54:39,969 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:54:39,970 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:54:39,971 - services - DEBUG - Navigating FHIR path: Observation.status, extension_url=None
-2025-08-01 00:54:39,973 - services - DEBUG - Navigating FHIR path: Observation.code, extension_url=None
-2025-08-01 00:54:39,975 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,976 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,980 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:54:39,981 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,988 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,990 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:40,015 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:40,017 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:54:40,022 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:54:40,024 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:54:40,028 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:54:40,029 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:41,057 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:54:41,059 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:54:41,060 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:54:41,061 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:54:41,063 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:54:41,065 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:41,066 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:41,070 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner
-2025-08-01 00:54:41,071 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:41,077 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:41,078 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner'
-2025-08-01 00:54:41,096 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:41,098 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' at path: package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:54:41,100 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:54:41,101 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:54:41,103 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:54:41,105 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:41,106 - services - DEBUG - Bundle validation result: valid=True, errors=0, warnings=0, resources=7
-2025-08-01 00:54:41,107 - services - INFO - Validation result for Bundle against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:54:41,109 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:41] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:55:46,274 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:55:46,275 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:55:46,276 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:55:46,278 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:55:46,303 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:55:46,409 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:55:46,411 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:55:46] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:55:46,425 - services - DEBUG - Received validate-sample request
-2025-08-01 00:55:46,427 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:55:46,428 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:55:46,431 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,434 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:55:46,435 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:55:46,438 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:55:46,439 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,445 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,446 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:55:46,468 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,470 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:55:46,475 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:55:46,477 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:55:46,481 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:55:46,482 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:55:47,472 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:55:47,474 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:55:47,474 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:55:47,476 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:55:47,477 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:55:47,479 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:55:47,480 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:55:47,481 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:55:47] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:56:01,610 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:56:01,611 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:56:01,612 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:56:01,614 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:56:01,634 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:56:01,712 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:56:01,714 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:01] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:56:01,726 - services - DEBUG - Received validate-sample request
-2025-08-01 00:56:01,727 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:56:01,728 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:01,731 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,733 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:56:01,735 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:01,738 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:56:01,739 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,743 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,744 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:01,759 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,761 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:56:01,764 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:56:01,766 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:56:01,770 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:56:01,771 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:02,425 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:02,427 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:02,428 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:02,430 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:02,431 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:56:02,433 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:56:02,434 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:56:02,435 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:02] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:56:14,054 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:56:14,055 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:56:14,056 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:56:14,057 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:56:14,070 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:56:14,147 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:56:14,149 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:14] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:56:14,157 - services - DEBUG - Received validate-sample request
-2025-08-01 00:56:14,158 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:56:14,160 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:14,163 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,166 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:56:14,166 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:14,170 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:56:14,172 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,177 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,178 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:14,193 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,195 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:56:14,197 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:56:14,198 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:56:14,201 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:56:14,202 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:14,875 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:14,877 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:14,878 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:14,879 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:14,881 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:56:14,883 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:56:14,884 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:56:14,885 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:14] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:56:18,236 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:56:18,237 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:56:18,238 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:56:18,239 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:56:18,257 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:56:18,348 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:56:18,350 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:18] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:56:18,364 - services - DEBUG - Received validate-sample request
-2025-08-01 00:56:18,366 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:56:18,366 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:18,369 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,373 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:56:18,374 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:18,377 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:56:18,378 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,383 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,384 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:18,401 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,403 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:56:18,406 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:56:18,408 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:56:18,412 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:56:18,413 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:19,183 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:19,184 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:19,185 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:19,186 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:19,187 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:56:19,189 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:56:19,190 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:56:19,191 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:19] "POST /api/validate-sample HTTP/1.1" 200 -

logs/supervisord.log

@@ -1,6 +0,0 @@
-2025-08-01 00:44:37,751 CRIT Supervisor is running as root.  Privileges were not dropped because no user is specified in the config file.  If you intend to run as root, you can set user=root in the config file to avoid this message.
-2025-08-01 00:44:37,755 INFO supervisord started with pid 1
-2025-08-01 00:44:38,762 INFO spawned: 'flask' with pid 8
-2025-08-01 00:44:38,767 INFO spawned: 'tomcat' with pid 9
-2025-08-01 00:44:49,750 INFO success: flask entered RUNNING state, process has stayed up for > than 10 seconds (startsecs)
-2025-08-01 00:45:08,829 INFO success: tomcat entered RUNNING state, process has stayed up for > than 30 seconds (startsecs)

logs/supervisord.pid

@@ -1 +0,0 @@
-1

logs/tomcat.log

@@ -1,184 +0,0 @@
-
-  .   ____          _            __ _ _
- /\\ / ___'_ __ _ _(_)_ __  __ _ \ \ \ \
-( ( )\___ | '_ | '_| | '_ \/ _` | \ \ \ \
- \\/  ___)| |_)| | | | | || (_| |  ) ) ) )
-  '  |____| .__|_| |_|_| |_\__, | / / / /
- =========|_|==============|___/=/_/_/_/
-
- :: Spring Boot ::               (v3.3.11)
-
-2025-08-01T00:44:50.113Z  INFO 9 --- [           main] ca.uhn.fhir.jpa.starter.Application      : Starting Application using Java 17.0.15 with PID 9 (/usr/local/tomcat/webapps/ROOT/WEB-INF/classes started by root in /usr/local/tomcat)
-2025-08-01T00:44:50.117Z  INFO 9 --- [           main] ca.uhn.fhir.jpa.starter.Application      : No active profile set, falling back to 1 default profile: "default"
-2025-08-01T00:44:51.730Z  INFO 9 --- [           main] .s.d.r.c.RepositoryConfigurationDelegate : Bootstrapping Spring Data JPA repositories in DEFAULT mode.
-2025-08-01T00:44:52.051Z  INFO 9 --- [           main] .s.d.r.c.RepositoryConfigurationDelegate : Finished Spring Data repository scanning in 305 ms. Found 53 JPA repository interfaces.
-2025-08-01T00:44:54.276Z  WARN 9 --- [           main] trationDelegate$BeanPostProcessorChecker : Bean 'ca.uhn.fhir.jpa.config.BeanPostProcessorConfig' of type [ca.uhn.fhir.jpa.config.BeanPostProcessorConfig$$SpringCGLIB$$0] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying). The currently created BeanPostProcessor [persistenceExceptionTranslationPostProcessor] is declared through a non-static factory method on that class; consider declaring it as static instead.
-2025-08-01T00:44:54.434Z  INFO 9 --- [           main] w.s.c.ServletWebServerApplicationContext : Root WebApplicationContext: initialization completed in 4281 ms
-2025-08-01T00:44:54.614Z  INFO 9 --- [           main] ca.uhn.fhir.util.VersionUtil             : HAPI FHIR version 8.2.0 - Rev 8a44e1058f
-2025-08-01T00:44:54.623Z  INFO 9 --- [           main] ca.uhn.fhir.context.FhirContext          : Creating new FHIR context for FHIR version [R4]
-2025-08-01T00:44:54.682Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to allow contains searches
-2025-08-01T00:44:54.682Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to deny multiple deletes
-2025-08-01T00:44:54.682Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to deny external references
-2025-08-01T00:44:54.683Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to enable DAO scheduling
-2025-08-01T00:44:54.683Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to disable delete expunges
-2025-08-01T00:44:54.683Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to enable expunges
-2025-08-01T00:44:54.683Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to allow overriding default search params
-2025-08-01T00:44:54.684Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to disable auto-creating placeholder references
-2025-08-01T00:44:54.684Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to auto-version references at paths []
-2025-08-01T00:44:54.684Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to enable value set pre-expansion
-2025-08-01T00:44:54.685Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to enable value set pre-expansion task
-2025-08-01T00:44:54.685Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured for pre-expand value set default count of 1000
-2025-08-01T00:44:54.685Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured for pre-expand value set max count of 1000
-2025-08-01T00:44:54.685Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured for maximum expansion size of 1000
-2025-08-01T00:44:54.717Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to have a maximum fetch size of 'unlimited'
-2025-08-01T00:44:54.717Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to cache search results for 60000 milliseconds
-2025-08-01T00:44:54.717Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to use 'ALPHANUMERIC' Client ID Strategy
-2025-08-01T00:44:54.758Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Partitioning is not enabled on this server
-2025-08-01T00:44:54.852Z  INFO 9 --- [           main] o.hibernate.jpa.internal.util.LogHelper  : HHH000204: Processing PersistenceUnitInfo [name: HAPI_PU]
-2025-08-01T00:44:54.986Z  INFO 9 --- [           main] org.hibernate.Version                    : HHH000412: Hibernate ORM core version 6.6.4.Final
-2025-08-01T00:44:55.001Z  INFO 9 --- [           main] .f.j.l.FilteringSqlLoggerImplContributor : Adding service: SqlStatementFilteringLogger
-2025-08-01T00:44:55.060Z  INFO 9 --- [           main] o.h.c.internal.RegionFactoryInitiator    : HHH000026: Second-level cache disabled
-2025-08-01T00:44:55.247Z  INFO 9 --- [           main] o.h.e.boot.internal.EnversServiceImpl    : Envers integration enabled? : true
-2025-08-01T00:44:55.586Z  INFO 9 --- [           main] o.s.o.j.p.SpringPersistenceUnitInfo      : No LoadTimeWeaver setup: ignoring JPA class transformer
-2025-08-01T00:44:55.628Z  INFO 9 --- [           main] com.zaxxer.hikari.HikariDataSource       : HikariPool-1 - Starting...
-2025-08-01T00:44:59.687Z  INFO 9 --- [           main] com.zaxxer.hikari.pool.HikariPool        : HikariPool-1 - Added connection conn1: url=jdbc:h2:file:/app/h2-data/fhir user=SA
-2025-08-01T00:44:59.691Z  INFO 9 --- [           main] com.zaxxer.hikari.HikariDataSource       : HikariPool-1 - Start completed.
-2025-08-01T00:44:59.756Z  INFO 9 --- [           main] org.hibernate.orm.connections.pooling    : HHH10001005: Database info:
-	Database JDBC URL [Connecting through datasource 'HikariDataSource (HikariPool-1)']
-	Database driver: undefined/unknown
-	Database version: 2.3.232
-	Autocommit mode: undefined/unknown
-	Isolation level: undefined/unknown
-	Minimum pool size: undefined/unknown
-	Maximum pool size: undefined/unknown
-2025-08-01T00:45:01.900Z  INFO 9 --- [           main] b.i.HibernateSearchPreIntegrationService : HSEARCH000034: Hibernate Search version 7.2.1.Final
-2025-08-01T00:45:02.062Z  INFO 9 --- [           main] o.h.e.c.i.m.AuditMetadataGenerator       : Adding properties for entity: ca.uhn.fhir.jpa.entity.MdmLink
-2025-08-01T00:45:04.735Z  INFO 9 --- [           main] o.h.e.t.j.p.i.JtaPlatformInitiator       : HHH000489: No JTA platform available (set 'hibernate.transaction.jta.platform' to enable JTA platform integration)
-2025-08-01T00:45:06.640Z  INFO 9 --- [           main] irLocalContainerEntityManagerFactoryBean : Initialized JPA EntityManagerFactory for persistence unit 'HAPI_PU'
-2025-08-01T00:45:07.684Z  INFO 9 --- [           main] .u.f.c.s.DefaultProfileValidationSupport : Loading structure definitions from classpath: /org/hl7/fhir/r4/model/profile/profiles-resources.xml
-2025-08-01T00:45:07.705Z  INFO 9 --- [           main] ca.uhn.fhir.util.XmlUtil                 : FHIR XML procesing will use StAX implementation 'Woodstox' version '6.4.0'
-2025-08-01T00:45:08.736Z  INFO 9 --- [           main] .u.f.c.s.DefaultProfileValidationSupport : Loading structure definitions from classpath: /org/hl7/fhir/r4/model/profile/profiles-types.xml
-2025-08-01T00:45:08.828Z  INFO 9 --- [           main] .u.f.c.s.DefaultProfileValidationSupport : Loading structure definitions from classpath: /org/hl7/fhir/r4/model/profile/profiles-others.xml
-2025-08-01T00:45:09.260Z  INFO 9 --- [           main] .u.f.c.s.DefaultProfileValidationSupport : Loading structure definitions from classpath: /org/hl7/fhir/r4/model/extension/extension-definitions.xml
-2025-08-01T00:45:10.281Z  INFO 9 --- [           main] o.s.d.j.r.query.QueryEnhancerFactory     : Hibernate is in classpath; If applicable, HQL parser will be used.
-2025-08-01T00:45:14.625Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Creating Local Scheduler
-2025-08-01T00:45:14.674Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Using default implementation for ThreadExecutor
-2025-08-01T00:45:14.693Z  INFO 9 --- [           main] org.quartz.core.SchedulerSignalerImpl    : Initialized Scheduler Signaller of type: class org.quartz.core.SchedulerSignalerImpl
-2025-08-01T00:45:14.693Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Quartz Scheduler v.2.3.2 created.
-2025-08-01T00:45:14.694Z  INFO 9 --- [           main] org.quartz.simpl.RAMJobStore             : RAMJobStore initialized.
-2025-08-01T00:45:14.695Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler meta-data: Quartz Scheduler (v2.3.2) 'hapi-fhir-jpa-scheduler' with instanceId 'NON_CLUSTERED'
-  Scheduler class: 'org.quartz.core.QuartzScheduler' - running locally.
-  NOT STARTED.
-  Currently in standby mode.
-  Number of jobs executed: 0
-  Using thread pool 'org.quartz.simpl.SimpleThreadPool' - with 4 threads.
-  Using job-store 'org.quartz.simpl.RAMJobStore' - which does not support persistence. and is not clustered.
-
-2025-08-01T00:45:14.695Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Quartz scheduler 'hapi-fhir-jpa-scheduler' initialized from an externally provided properties instance.
-2025-08-01T00:45:14.695Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Quartz scheduler version: 2.3.2
-2025-08-01T00:45:14.696Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : JobFactory set to: ca.uhn.fhir.jpa.sched.AutowiringSpringBeanJobFactory@f7fb17c
-2025-08-01T00:45:14.696Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler hapi-fhir-jpa-scheduler_$_NON_CLUSTERED paused.
-2025-08-01T00:45:14.696Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Creating Clustered Scheduler
-2025-08-01T00:45:14.697Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Using default implementation for ThreadExecutor
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.core.SchedulerSignalerImpl    : Initialized Scheduler Signaller of type: class org.quartz.core.SchedulerSignalerImpl
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Quartz Scheduler v.2.3.2 created.
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.simpl.RAMJobStore             : RAMJobStore initialized.
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler meta-data: Quartz Scheduler (v2.3.2) 'hapi-fhir-jpa-scheduler' with instanceId 'NON_CLUSTERED'
-  Scheduler class: 'org.quartz.core.QuartzScheduler' - running locally.
-  NOT STARTED.
-  Currently in standby mode.
-  Number of jobs executed: 0
-  Using thread pool 'org.quartz.simpl.SimpleThreadPool' - with 4 threads.
-  Using job-store 'org.quartz.simpl.RAMJobStore' - which does not support persistence. and is not clustered.
-
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Quartz scheduler 'hapi-fhir-jpa-scheduler' initialized from an externally provided properties instance.
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Quartz scheduler version: 2.3.2
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : JobFactory set to: ca.uhn.fhir.jpa.sched.AutowiringSpringBeanJobFactory@f7fb17c
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler hapi-fhir-jpa-scheduler_$_NON_CLUSTERED paused.
-2025-08-01T00:45:15.168Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618
-2025-08-01T00:45:15.169Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618 succeeded in 1ms
-2025-08-01T00:45:15.177Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618
-2025-08-01T00:45:15.178Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618 succeeded in 1ms
-2025-08-01T00:45:15.179Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618
-2025-08-01T00:45:15.179Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618 succeeded in 0ms
-2025-08-01T00:45:15.180Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618
-2025-08-01T00:45:15.180Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618 succeeded in 0ms
-2025-08-01T00:45:15.181Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618
-2025-08-01T00:45:15.181Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618 succeeded in 0ms
-2025-08-01T00:45:15.182Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618
-2025-08-01T00:45:15.182Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618 succeeded in 0ms
-2025-08-01T00:45:15.255Z  INFO 9 --- [           main] ca.uhn.fhir.context.FhirContext          : Creating new FHIR context for FHIR version [R4]
-2025-08-01T00:45:15.531Z  INFO 9 --- [           main] c.u.f.j.starter.common.StarterJpaConfig  : CORS is enabled on this server
-2025-08-01T00:45:15.533Z  INFO 9 --- [           main] c.u.f.j.starter.common.StarterJpaConfig  : CORS allows the following origins: *
-2025-08-01T00:45:15.562Z  INFO 9 --- [           main] ca.uhn.fhir.context.FhirContext          : Creating new FHIR context for FHIR version [R5]
-2025-08-01T00:45:20.832Z  INFO 9 --- [           main] ca.uhn.fhir.context.FhirContext          : Creating new FHIR context for FHIR version [R4]
-2025-08-01T00:45:21.725Z  WARN 9 --- [           main] JpaBaseConfiguration$JpaWebConfiguration : spring.jpa.open-in-view is enabled by default. Therefore, database queries may be performed during view rendering. Explicitly configure spring.jpa.open-in-view to disable this warning
-2025-08-01T00:45:22.254Z  INFO 9 --- [           main] .s.i.SubscriptionSubmitInterceptorLoader : Subscriptions are disabled on this server.  Subscriptions will not be activated and incoming resources will not be matched against subscriptions.
-2025-08-01T00:45:22.925Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Using default implementation for ThreadExecutor
-2025-08-01T00:45:22.930Z  INFO 9 --- [           main] org.quartz.core.SchedulerSignalerImpl    : Initialized Scheduler Signaller of type: class org.quartz.core.SchedulerSignalerImpl
-2025-08-01T00:45:22.931Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Quartz Scheduler v.2.3.2 created.
-2025-08-01T00:45:22.931Z  INFO 9 --- [           main] org.quartz.simpl.RAMJobStore             : RAMJobStore initialized.
-2025-08-01T00:45:22.931Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler meta-data: Quartz Scheduler (v2.3.2) 'quartzScheduler' with instanceId 'NON_CLUSTERED'
-  Scheduler class: 'org.quartz.core.QuartzScheduler' - running locally.
-  NOT STARTED.
-  Currently in standby mode.
-  Number of jobs executed: 0
-  Using thread pool 'org.quartz.simpl.SimpleThreadPool' - with 10 threads.
-  Using job-store 'org.quartz.simpl.RAMJobStore' - which does not support persistence. and is not clustered.
-
-2025-08-01T00:45:22.931Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Quartz scheduler 'quartzScheduler' initialized from an externally provided properties instance.
-2025-08-01T00:45:22.931Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Quartz scheduler version: 2.3.2
-2025-08-01T00:45:22.931Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : JobFactory set to: org.springframework.scheduling.quartz.SpringBeanJobFactory@48e64e95
-2025-08-01T00:45:22.968Z  INFO 9 --- [           main] o.s.b.a.e.web.EndpointLinksResolver      : Exposing 1 endpoint beneath base path '/actuator'
-2025-08-01T00:45:23.183Z  INFO 9 --- [           main] o.s.s.quartz.SchedulerFactoryBean        : Starting Quartz Scheduler now
-2025-08-01T00:45:23.183Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler quartzScheduler_$_NON_CLUSTERED started.
-2025-08-01T00:45:23.189Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: BULK_IMPORT_PULL / 1
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: BULK_IMPORT_PULL / 2
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: REINDEX / 1
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: REINDEX / 2
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: DELETE_EXPUNGE / 1
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: BULK_EXPORT / 1
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: BULK_EXPORT / 2
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: termCodeSystemVersionDeleteJob / 1
-2025-08-01T00:45:23.192Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: termCodeSystemDeleteJob / 1
-2025-08-01T00:45:23.192Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: bulkImportJob / 1
-2025-08-01T00:45:23.194Z  INFO 9 --- [           main] .j.s.m.m.s.MatchingQueueSubscriberLoader : Subscription Matching Subscriber subscribed to Matching Channel ca.uhn.fhir.jpa.subscription.channel.subscription.BroadcastingSubscribableChannelWrapper with name subscription-matching
-2025-08-01T00:45:24.054Z  INFO 9 --- [           main] c.u.f.j.s.registry.JpaSearchParamCache   : Have 0 unique search params
-2025-08-01T00:45:24.148Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling 15 jobs in application
-2025-08-01T00:45:24.150Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling local job ca.uhn.fhir.jpa.term.TermDeferredStorageSvcImpl$Job with interval 5000ms
-2025-08-01T00:45:24.156Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling local job ca.uhn.fhir.jpa.cache.ResourceChangeListenerCacheRefresherImpl with interval 00:00:10.000
-2025-08-01T00:45:24.158Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.search.reindex.ResourceReindexingSvcImpl with interval 00:00:10.000
-2025-08-01T00:45:24.159Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.bulk.export.svc.BulkDataExportJobSchedulingHelperImpl$PurgeExpiredFilesJob with interval 01:00:00
-2025-08-01T00:45:24.161Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling local job ca.uhn.fhir.jpa.bulk.imprt.svc.BulkDataImportSvcImpl$ActivationJob with interval 00:00:10.000
-2025-08-01T00:45:24.162Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.search.warm.CacheWarmingSvcImpl with interval 00:00:10.000
-2025-08-01T00:45:24.163Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.term.TermReadSvcImpl with interval 00:10:00
-2025-08-01T00:45:24.165Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling local job ca.uhn.fhir.jpa.term.TermReindexingSvcImpl with interval 00:01:00.000
-2025-08-01T00:45:24.166Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.search.SearchUrlJobMaintenanceSvcImpl$SearchUrlMaintenanceJob with interval 00:10:00
-2025-08-01T00:45:24.166Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.search.StaleSearchDeletingSvcImpl with interval 00:01:00.000
-2025-08-01T00:45:24.167Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling local job ca.uhn.fhir.jpa.util.ResourceCountCache with interval 00:10:00
-2025-08-01T00:45:24.168Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling local job ca.uhn.fhir.jpa.subscription.triggering.SubscriptionTriggeringSvcImpl with interval 5000ms
-2025-08-01T00:45:24.168Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.subscription.async.AsyncResourceModifiedProcessingSchedulerSvc with interval 5000ms
-2025-08-01T00:45:24.168Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.batch2.coordinator.ReductionStepExecutorServiceImpl$ReductionStepExecutorScheduledJob with interval 00:00:10.000
-2025-08-01T00:45:24.169Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.batch2.maintenance.JobMaintenanceServiceImpl$JobMaintenanceScheduledJob with interval 00:01:00.000
-2025-08-01T00:45:24.169Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Starting task schedulers for context application
-2025-08-01T00:45:24.169Z  INFO 9 --- [           main] c.uhn.fhir.jpa.sched.BaseHapiScheduler   : Starting scheduler hapi-fhir-jpa-scheduler-local
-2025-08-01T00:45:24.169Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler hapi-fhir-jpa-scheduler_$_NON_CLUSTERED started.
-2025-08-01T00:45:24.169Z  INFO 9 --- [           main] c.uhn.fhir.jpa.sched.BaseHapiScheduler   : Starting scheduler hapi-fhir-jpa-scheduler-clustered
-2025-08-01T00:45:24.170Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler hapi-fhir-jpa-scheduler_$_NON_CLUSTERED started.
-2025-08-01T00:45:24.194Z  INFO 9 --- [           main] ca.uhn.fhir.jpa.starter.Application      : Started Application in 34.72 seconds (process running for 45.415)
-2025-08-01T00:45:24.208Z  INFO 9 --- [ler-clustered-2] .s.BulkDataExportJobSchedulingHelperImpl : Finished bulk export job deletion with nothing to do
-2025-08-01T00:45:24.260Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : Initializing HAPI FHIR restful server running in R4 mode
-2025-08-01T00:45:24.261Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : Added 147 resource provider(s). Total 147
-2025-08-01T00:45:24.710Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : Added 5 plain provider(s). Total 5
-2025-08-01T00:45:24.717Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : Removing RESTful methods for: class ca.uhn.fhir.jpa.provider.JpaCapabilityStatementProvider
-2025-08-01T00:45:24.718Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : OperationDefinition binding of ca.uhn.fhir.rest.server.method.ReadMethodBinding@2091d0e3 was removed
-2025-08-01T00:45:24.719Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : OperationDefinition binding of ca.uhn.fhir.rest.server.method.ReadMethodBinding@5221dfd5 was removed
-2025-08-01T00:45:24.762Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : A FHIR has been lit on this server
-2025-08-01T00:50:33.549Z  INFO 9 --- [nio-8080-exec-1] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@3e87800e
-2025-08-01T00:50:33.963Z  INFO 9 --- [nio-8080-exec-1] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@3e87800e succeeded in 414ms
-2025-08-01T00:50:35.020Z  INFO 9 --- [nio-8080-exec-1] fhirtest.access                          : Path[/fhir] Source[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[]
-2025-08-01T00:54:39.611Z  INFO 9 --- [nio-8080-exec-2] fhirtest.access                          : Path[/fhir] Source[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[]
-2025-08-01T00:55:46.409Z  INFO 9 --- [nio-8080-exec-4] fhirtest.access                          : Path[/fhir] Source[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[]
-2025-08-01T00:56:01.712Z  INFO 9 --- [nio-8080-exec-6] fhirtest.access                          : Path[/fhir] Source[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[]
-2025-08-01T00:56:14.147Z  INFO 9 --- [nio-8080-exec-8] fhirtest.access                          : Path[/fhir] Source[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[]
-2025-08-01T00:56:18.348Z  INFO 9 --- [io-8080-exec-10] fhirtest.access                          : Path[/fhir] Source[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[]

logs/tomcat_err.log

@@ -1,41 +0,0 @@
-01-Aug-2025 00:44:39.175 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name:   Apache Tomcat/10.1.43
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built:          Jul 1 2025 21:30:20 UTC
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 10.1.43.0
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name:               Linux
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version:            5.15.167.4-microsoft-standard-WSL2
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture:          amd64
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home:             /opt/java/openjdk
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version:           17.0.15+6
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor:            Eclipse Adoptium
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE:         /usr/local/tomcat
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME:         /usr/local/tomcat
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/usr/local/tomcat/conf/logging.properties
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dsun.io.useCanonCaches=false
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang=ALL-UNNAMED
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang.reflect=ALL-UNNAMED
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.io=ALL-UNNAMED
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.util=ALL-UNNAMED
-01-Aug-2025 00:44:39.189 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.util.concurrent=ALL-UNNAMED
-01-Aug-2025 00:44:39.189 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
-01-Aug-2025 00:44:39.189 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/usr/local/tomcat
-01-Aug-2025 00:44:39.189 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/usr/local/tomcat
-01-Aug-2025 00:44:39.189 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/usr/local/tomcat/temp
-01-Aug-2025 00:44:39.192 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent Loaded Apache Tomcat Native library [2.0.9] using APR version [1.7.2].
-01-Aug-2025 00:44:39.194 INFO [main] org.apache.catalina.core.AprLifecycleListener.initializeSSL OpenSSL successfully initialized [OpenSSL 3.0.13 30 Jan 2024]
-01-Aug-2025 00:44:39.445 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
-01-Aug-2025 00:44:39.465 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [475] milliseconds
-01-Aug-2025 00:44:39.519 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
-01-Aug-2025 00:44:39.519 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/10.1.43]
-01-Aug-2025 00:44:39.544 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/usr/local/tomcat/webapps/ROOT.war]
-01-Aug-2025 00:44:48.747 INFO [main] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
-01-Aug-2025 00:45:24.787 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/usr/local/tomcat/webapps/ROOT.war] has finished in [45,243] ms
-01-Aug-2025 00:45:24.788 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/custom]
-01-Aug-2025 00:45:24.812 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/usr/local/tomcat/webapps/custom] has finished in [24] ms
-01-Aug-2025 00:45:24.813 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/app]
-01-Aug-2025 00:45:24.829 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/usr/local/tomcat/webapps/app] has finished in [15] ms
-01-Aug-2025 00:45:24.834 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
-01-Aug-2025 00:45:24.865 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [45402] milliseconds

setup_linux.sh

@@ -1,233 +0,0 @@
-#!/bin/bash
-
-# --- Configuration ---
-REPO_URL="https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git"
-CLONE_DIR="hapi-fhir-jpaserver"
-SOURCE_CONFIG_DIR="hapi-fhir-Setup" # Assuming this is relative to the script's parent
-CONFIG_FILE="application.yaml"
-
-# --- Define Paths ---
-# Note: Adjust SOURCE_CONFIG_PATH if SOURCE_CONFIG_DIR is not a sibling directory
-# This assumes the script is run from a directory, and hapi-fhir-setup is at the same level
-SOURCE_CONFIG_PATH="../${SOURCE_CONFIG_DIR}/target/classes/${CONFIG_FILE}"
-DEST_CONFIG_PATH="${CLONE_DIR}/target/classes/${CONFIG_FILE}"
-
-APP_MODE=""
-
-# --- Error Handling Function ---
-handle_error() {
-    echo "------------------------------------"
-    echo "An error occurred: $1"
-    echo "Script aborted."
-    echo "------------------------------------"
-    # Removed 'read -p "Press Enter to exit..."' as it's not typical for non-interactive CI/CD
-    exit 1
-}
-
-# === Prompt for Installation Mode ===
-get_mode_choice() {
-    echo "Select Installation Mode:"
-    echo "1. Standalone (Includes local HAPI FHIR Server - Requires Git & Maven)"
-    echo "2. Lite (Excludes local HAPI FHIR Server - No Git/Maven needed)"
-
-    while true; do
-        read -r -p "Enter your choice (1 or 2): " choice
-        case "$choice" in
-            1)
-                APP_MODE="standalone"
-                break
-                ;;
-            2)
-                APP_MODE="lite"
-                break
-                ;;
-            *)
-                echo "Invalid input. Please try again."
-                ;;
-        esac
-    done
-    echo "Selected Mode: $APP_MODE"
-    echo
-}
-
-# Call the function to get mode choice
-get_mode_choice
-
-# === Conditionally Execute HAPI Setup ===
-if [ "$APP_MODE" = "standalone" ]; then
-    echo "Running Standalone setup including HAPI FHIR..."
-    echo
-
-    # --- Step 0: Clean up previous clone (optional) ---
-    echo "Checking for existing directory: $CLONE_DIR"
-    if [ -d "$CLONE_DIR" ]; then
-        echo "Found existing directory, removing it..."
-        rm -rf "$CLONE_DIR"
-        if [ $? -ne 0 ]; then
-            handle_error "Failed to remove existing directory: $CLONE_DIR"
-        fi
-        echo "Existing directory removed."
-    else
-        echo "Directory does not exist, proceeding with clone."
-    fi
-    echo
-
-    # --- Step 1: Clone the HAPI FHIR server repository ---
-    echo "Cloning repository: $REPO_URL into $CLONE_DIR..."
-    git clone "$REPO_URL" "$CLONE_DIR"
-    if [ $? -ne 0 ]; then
-        handle_error "Failed to clone repository. Check Git installation and network connection."
-    fi
-    echo "Repository cloned successfully."
-    echo
-
-    # --- Step 2: Navigate into the cloned directory ---
-    echo "Changing directory to $CLONE_DIR..."
-    cd "$CLONE_DIR" || handle_error "Failed to change directory to $CLONE_DIR."
-    echo "Current directory: $(pwd)"
-    echo
-
-    # --- Step 3: Build the HAPI server using Maven ---
-    echo "===> Starting Maven build (Step 3)..."
-    mvn clean package -DskipTests=true -Pboot
-    if [ $? -ne 0 ]; then
-        echo "ERROR: Maven build failed."
-        cd ..
-        handle_error "Maven build process resulted in an error."
-    fi
-    echo "Maven build completed successfully."
-    echo
-
-    # --- Step 4: Copy the configuration file ---
-    echo "===> Starting file copy (Step 4)..."
-    echo "Copying configuration file..."
-    # Corrected SOURCE_CONFIG_PATH to be relative to the new current directory ($CLONE_DIR)
-    # This assumes the original script's SOURCE_CONFIG_PATH was relative to its execution location
-    # If SOURCE_CONFIG_DIR is ../hapi-fhir-setup relative to script's original location:
-    # Then from within CLONE_DIR, it becomes ../../hapi-fhir-setup
-    # We defined SOURCE_CONFIG_PATH earlier relative to the script start.
-    # So, when inside CLONE_DIR, the path from original script location should be used.
-    # The original script had: set SOURCE_CONFIG_PATH=..\%SOURCE_CONFIG_DIR%\target\classes\%CONFIG_FILE%
-    # And then: xcopy "%SOURCE_CONFIG_PATH%" "target\classes\"
-    # This implies SOURCE_CONFIG_PATH is relative to the original script's location, not the $CLONE_DIR
-    # Therefore, we need to construct the correct relative path from *within* $CLONE_DIR back to the source.
-    # Assuming the script is in dir X, and SOURCE_CONFIG_DIR is ../hapi-fhir-setup from X.
-    # So, hapi-fhir-setup is a sibling of X's parent.
-    # If CLONE_DIR is also in X, then from within CLONE_DIR, the path is ../ + original SOURCE_CONFIG_PATH
-    # For simplicity and robustness, let's use an absolute path or a more clearly defined relative path from the start.
-    # The original `SOURCE_CONFIG_PATH=..\%SOURCE_CONFIG_DIR%\target\classes\%CONFIG_FILE%` implies
-    # that `hapi-fhir-setup` is a sibling of the directory where the script *is being run from*.
-
-    # Let's assume the script is run from the root of FHIRFLARE-IG-Toolkit.
-    # And hapi-fhir-setup is also in the root, next to this script.
-    # Then SOURCE_CONFIG_PATH would be ./hapi-fhir-setup/target/classes/application.yaml
-    # And from within ./hapi-fhir-jpaserver/, the path would be ../hapi-fhir-setup/target/classes/application.yaml
-
-    # The original batch file sets SOURCE_CONFIG_PATH as "..\%SOURCE_CONFIG_DIR%\target\classes\%CONFIG_FILE%"
-    # And COPIES it to "target\classes\" *while inside CLONE_DIR*.
-    # This means the source path is relative to where the *cd %CLONE_DIR%* happened from.
-    # Let's make it relative to the script's initial execution directory.
-    INITIAL_SCRIPT_DIR=$(pwd)
-    ABSOLUTE_SOURCE_CONFIG_PATH="${INITIAL_SCRIPT_DIR}/../${SOURCE_CONFIG_DIR}/target/classes/${CONFIG_FILE}" # This matches the ..\ logic
-
-    echo "Source: $ABSOLUTE_SOURCE_CONFIG_PATH"
-    echo "Destination: target/classes/$CONFIG_FILE"
-
-    if [ ! -f "$ABSOLUTE_SOURCE_CONFIG_PATH" ]; then
-        echo "WARNING: Source configuration file not found at $ABSOLUTE_SOURCE_CONFIG_PATH."
-        echo "The script will continue, but the server might use default configuration."
-    else
-        cp "$ABSOLUTE_SOURCE_CONFIG_PATH" "target/classes/"
-        if [ $? -ne 0 ]; then
-            echo "WARNING: Failed to copy configuration file. Check if the source file exists and permissions."
-            echo "The script will continue, but the server might use default configuration."
-        else
-            echo "Configuration file copied successfully."
-        fi
-    fi
-    echo
-
-    # --- Step 5: Navigate back to the parent directory ---
-    echo "===> Changing directory back (Step 5)..."
-    cd .. || handle_error "Failed to change back to the parent directory."
-    echo "Current directory: $(pwd)"
-    echo
-
-else # APP_MODE is "lite"
-    echo "Running Lite setup, skipping HAPI FHIR build..."
-    # Ensure the hapi-fhir-jpaserver directory doesn't exist or is empty if Lite mode is chosen
-    if [ -d "$CLONE_DIR" ]; then
-        echo "Found existing HAPI directory ($CLONE_DIR) in Lite mode. Removing it..."
-        rm -rf "$CLONE_DIR"
-    fi
-    # Create empty target directories expected by Dockerfile COPY, even if not used
-    mkdir -p "${CLONE_DIR}/target/classes"
-    mkdir -p "${CLONE_DIR}/custom" # This was in the original batch, ensure it's here
-    # Create a placeholder empty WAR file and application.yaml to satisfy Dockerfile COPY
-    touch "${CLONE_DIR}/target/ROOT.war"
-    touch "${CLONE_DIR}/target/classes/application.yaml"
-    echo "Placeholder files and directories created for Lite mode build in $CLONE_DIR."
-    echo
-fi
-
-# === Modify docker-compose.yml to set APP_MODE ===
-echo "Updating docker-compose.yml with APP_MODE=$APP_MODE..."
-DOCKER_COMPOSE_TMP="docker-compose.yml.tmp"
-DOCKER_COMPOSE_ORIG="docker-compose.yml"
-
-cat << EOF > "$DOCKER_COMPOSE_TMP"
-version: '3.8'
-services:
-  fhirflare:
-    build:
-      context: .
-      dockerfile: Dockerfile
-    ports:
-      - "5000:5000"
-      - "8080:8080" # Keep port exposed, even if Tomcat isn't running useful stuff in Lite
-    volumes:
-      - ./instance:/app/instance
-      - ./static/uploads:/app/static/uploads
-      - ./instance/hapi-h2-data/:/app/h2-data # Keep volume mounts consistent
-      - ./logs:/app/logs
-    environment:
-      - FLASK_APP=app.py
-      - FLASK_ENV=development
-      - NODE_PATH=/usr/lib/node_modules
-      - APP_MODE=${APP_MODE}
-      - APP_BASE_URL=http://localhost:5000
-      - HAPI_FHIR_URL=http://localhost:8080/fhir
-    command: supervisord -c /etc/supervisord.conf
-EOF
-
-if [ ! -f "$DOCKER_COMPOSE_TMP" ]; then
-    handle_error "Failed to create temporary docker-compose file ($DOCKER_COMPOSE_TMP)."
-fi
-
-# Replace the original docker-compose.yml
-mv "$DOCKER_COMPOSE_TMP" "$DOCKER_COMPOSE_ORIG"
-echo "docker-compose.yml updated successfully."
-echo
-
-# --- Step 6: Build Docker images ---
-echo "===> Starting Docker build (Step 6)..."
-docker-compose build --no-cache
-if [ $? -ne 0 ]; then
-    handle_error "Docker Compose build failed. Check Docker installation and docker-compose.yml file."
-fi
-echo "Docker images built successfully."
-echo
-
-# --- Step 7: Start Docker containers ---
-echo "===> Starting Docker containers (Step 7)..."
-docker-compose up -d
-if [ $? -ne 0 ]; then
-    handle_error "Docker Compose up failed. Check Docker installation and container configurations."
-fi
-echo "Docker containers started successfully."
-echo
-
-echo "===================================="
-echo "Script finished successfully! (Mode: $APP_MODE)"
-echo "===================================="
-exit 0

supervisord.conf

@@ -24,8 +24,8 @@ stderr_logfile_backups=5
 command=/usr/local/tomcat/bin/catalina.sh run 
 directory=/usr/local/tomcat 
 environment=SPRING_CONFIG_LOCATION="file:/usr/local/tomcat/conf/application.yaml",NODE_PATH="/usr/lib/node_modules" 
-autostart=true 
-autorestart=true 
+autostart=false 
+autorestart=false 
 startsecs=30 
 stopwaitsecs=30 
 stdout_logfile=/app/logs/tomcat.log 

tests/test_app.py

@@ -6,6 +6,8 @@ import tarfile
 import shutil
 import io
 import requests
+import time
+import subprocess
 from unittest.mock import patch, MagicMock, mock_open, call
 from flask import Flask, session
 from flask.testing import FlaskClient
@@ -27,9 +29,252 @@ def parse_ndjson(byte_stream):
     lines = decoded_stream.split('\n')
     return [json.loads(line) for line in lines if line.strip()]
 
+class DockerComposeContainer:
+    """
+    A class that follows the Testcontainers pattern for managing Docker Compose environments.
+    This implementation uses subprocess to call docker-compose directly since we're not 
+    installing the testcontainers-python package.
+    """
+    
+    def __init__(self, compose_file_path):
+        """
+        Initialize with the path to the docker-compose.yml file
+        
+        Args:
+            compose_file_path: Path to the docker-compose.yml file
+        """
+        self.compose_file = compose_file_path
+        self.compose_dir = os.path.dirname(os.path.abspath(compose_file_path))
+        self.containers_up = False
+        self.service_ports = {}
+        self._container_ids = {}
+    
+    def __enter__(self):
+        """Start containers when entering context"""
+        self.start()
+        return self
+    
+    def __exit__(self, exc_type, exc_val, exc_tb):
+        """Stop containers when exiting context"""
+        self.stop()
+    
+    def with_service_port(self, service_name, port):
+        """
+        Map a service port (following the testcontainers builder pattern)
+        
+        Args:
+            service_name: Name of the service in docker-compose.yml
+            port: Port number to expose
+            
+        Returns:
+            self for chaining
+        """
+        self.service_ports[service_name] = port
+        return self
+    
+    def start(self):
+        """Start the Docker Compose environment"""
+        if self.containers_up:
+            return self
+            
+        print("Starting Docker Compose environment...")
+        result = subprocess.run(
+            ['docker-compose', '-f', self.compose_file, 'up', '-d'],
+            cwd=self.compose_dir,
+            capture_output=True,
+            text=True
+        )
+        
+        if result.returncode != 0:
+            error_msg = f"Failed to start Docker Compose environment: {result.stderr}"
+            print(error_msg)
+            raise RuntimeError(error_msg)
+        
+        # Store container IDs for later use
+        self._get_container_ids()
+        
+        self.containers_up = True
+        self._wait_for_services()
+        return self
+    
+    def _get_container_ids(self):
+        """Get the container IDs for all services"""
+        result = subprocess.run(
+            ['docker-compose', '-f', self.compose_file, 'ps', '-q'],
+            cwd=self.compose_dir,
+            capture_output=True,
+            text=True
+        )
+        
+        if result.returncode != 0:
+            return
+            
+        container_ids = result.stdout.strip().split('\n')
+        if not container_ids:
+            return
+            
+        # Get service names for each container
+        for container_id in container_ids:
+            if not container_id:
+                continue
+                
+            inspect_result = subprocess.run(
+                ['docker', 'inspect', '--format', '{{index .Config.Labels "com.docker.compose.service"}}', container_id],
+                capture_output=True,
+                text=True
+            )
+            
+            if inspect_result.returncode == 0:
+                service_name = inspect_result.stdout.strip()
+                self._container_ids[service_name] = container_id
+    
+    def get_container_id(self, service_name):
+        """
+        Get the container ID for a specific service
+        
+        Args:
+            service_name: Name of the service in docker-compose.yml
+            
+        Returns:
+            Container ID as string or None if not found
+        """
+        return self._container_ids.get(service_name)
+    
+    def get_service_host(self, service_name):
+        """
+        Get the host for a specific service - for Docker Compose we just use localhost
+        
+        Args:
+            service_name: Name of the service in docker-compose.yml
+            
+        Returns:
+            Host as string (usually localhost)
+        """
+        return "localhost"
+    
+    def get_service_url(self, service_name, path=""):
+        """
+        Get the URL for a specific service
+        
+        Args:
+            service_name: Name of the service in docker-compose.yml
+            path: Optional path to append to the URL
+            
+        Returns:
+            URL as string
+        """
+        port = self.service_ports.get(service_name)
+        if not port:
+            raise ValueError(f"No port mapping defined for service {service_name}")
+            
+        url = f"http://{self.get_service_host(service_name)}:{port}"
+        if path:
+            # Ensure path starts with /
+            if not path.startswith('/'):
+                path = f"/{path}"
+            url = f"{url}{path}"
+            
+        return url
+    
+    def get_logs(self, service_name):
+        """
+        Get logs for a specific service
+        
+        Args:
+            service_name: Name of the service in docker-compose.yml
+            
+        Returns:
+            Logs as string
+        """
+        container_id = self.get_container_id(service_name)
+        if not container_id:
+            return f"No container found for service {service_name}"
+            
+        result = subprocess.run(
+            ['docker', 'logs', container_id],
+            capture_output=True,
+            text=True
+        )
+        
+        return result.stdout
+    
+    def stop(self):
+        """Stop the Docker Compose environment"""
+        if not self.containers_up:
+            return
+            
+        print("Stopping Docker Compose environment...")
+        result = subprocess.run(
+            ['docker-compose', '-f', self.compose_file, 'down'],
+            cwd=self.compose_dir,
+            capture_output=True,
+            text=True
+        )
+        
+        if result.returncode != 0:
+            print(f"Warning: Error stopping Docker Compose: {result.stderr}")
+        
+        self.containers_up = False
+    
+    def _wait_for_services(self):
+        """Wait for all services to be ready"""
+        print("Waiting for services to be ready...")
+        
+        # Wait for HAPI FHIR server
+        if 'fhir' in self.service_ports:
+            self._wait_for_http_service(
+                self.get_service_url('fhir', 'fhir/metadata'),
+                "HAPI FHIR server"
+            )
+        
+        # Wait for FHIRFLARE application
+        if 'fhirflare' in self.service_ports:
+            self._wait_for_http_service(
+                self.get_service_url('fhirflare'),
+                "FHIRFLARE application"
+            )
+        
+        # Give additional time for services to stabilize
+        time.sleep(5)
+    
+    def _wait_for_http_service(self, url, service_name, max_retries=30, retry_interval=2):
+        """
+        Wait for an HTTP service to be ready
+        
+        Args:
+            url: URL to check
+            service_name: Name of the service for logging
+            max_retries: Maximum number of retries
+            retry_interval: Interval between retries in seconds
+        """
+        for attempt in range(max_retries):
+            try:
+                response = requests.get(url, timeout=5)
+                if response.status_code == 200:
+                    print(f"{service_name} is ready after {attempt + 1} attempts")
+                    return True
+            except requests.RequestException:
+                pass
+            
+            print(f"Waiting for {service_name} (attempt {attempt + 1}/{max_retries})...")
+            time.sleep(retry_interval)
+        
+        print(f"Warning: {service_name} did not become ready in time")
+        return False
+
 class TestFHIRFlareIGToolkit(unittest.TestCase):
     @classmethod
     def setUpClass(cls):
+        # Define the Docker Compose container
+        compose_file_path = os.path.join(os.path.dirname(__file__), 'docker-compose.yml')
+        cls.container = DockerComposeContainer(compose_file_path) \
+            .with_service_port('fhir', 8080) \
+            .with_service_port('fhirflare', 5000)
+        
+        # Start the containers
+        cls.container.start()
+        
+        # Configure app for testing
         app.config['TESTING'] = True
         app.config['WTF_CSRF_ENABLED'] = False
         app.config['SQLALCHEMY_DATABASE_URI'] = 'sqlite:///:memory:'
@@ -39,6 +284,7 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
         app.config['API_KEY'] = 'test-api-key'
         app.config['VALIDATE_IMPOSED_PROFILES'] = True
         app.config['DISPLAY_PROFILE_RELATIONSHIPS'] = True
+        app.config['HAPI_FHIR_URL'] = cls.container.get_service_url('fhir', 'fhir')  # Point to containerized HAPI FHIR
 
         cls.app_context = app.app_context()
         cls.app_context.push()
@@ -50,6 +296,9 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
         cls.app_context.pop()
         if os.path.exists(cls.test_packages_dir):
             shutil.rmtree(cls.test_packages_dir)
+        
+        # Stop Docker Compose environment
+        cls.container.stop()
 
     def setUp(self):
         if os.path.exists(self.test_packages_dir):
@@ -96,321 +345,63 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
         with patch('fhirpath.evaluate', side_effect=Exception("fhirpath error")):
             self.assertEqual(services.navigate_fhir_path(resource, "Patient.name[0].given"), ["John"])
 
-    def test_02_render_node_as_li(self):
-        node = {
-            "element": {"path": "Patient.identifier", "id": "Patient.identifier", "sliceName": "us-ssn", "min": 0, "max": "*", "type": [{"code": "Identifier"}]},
-            "name": "identifier",
-            "children": {}
-        }
-        must_support_paths = {"Patient.identifier:us-ssn"}
-        with app.app_context:
-            html = render_template('cp_view_processed_ig.html', processed_ig=MagicMock(must_support_elements={"USCorePatientProfile": ["Patient.identifier:us-ssn"]}), profile_list=[{"name": "USCorePatientProfile"}], base_list=[])
-            self.assertIn("identifier:us-ssn", html)
-            self.assertIn("list-group-item-warning", html)
-            self.assertIn("Must Support (Slice: us-ssn)", html)
-
     # --- Basic Page Rendering Tests ---
 
     def test_03_homepage(self):
-        response = self.client.get('/')
+        # Connect to the containerized application
+        response = requests.get(self.container.get_service_url('fhirflare'))
         self.assertEqual(response.status_code, 200)
-        self.assertIn(b'FHIRFLARE IG Toolkit', response.data)
+        self.assertIn('FHIRFLARE IG Toolkit', response.text)
 
     def test_04_import_ig_page(self):
-        response = self.client.get('/import-ig')
+        response = requests.get(self.container.get_service_url('fhirflare', 'import-ig'))
         self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Import IG', response.data)
-        self.assertIn(b'Package Name', response.data)
-        self.assertIn(b'Package Version', response.data)
-        self.assertIn(b'name="dependency_mode"', response.data)
+        self.assertIn('Import IG', response.text)
+        self.assertIn('Package Name', response.text)
+        self.assertIn('Package Version', response.text)
+        self.assertIn('name="dependency_mode"', response.text)
 
-    @patch('app.list_downloaded_packages', return_value=([], [], {}))
-    def test_05_view_igs_no_packages(self, mock_list_pkgs):
-        response = self.client.get('/view-igs')
-        self.assertEqual(response.status_code, 200)
-        self.assertNotIn(b'<th>Package Name</th>', response.data)
-        self.assertIn(b'No packages downloaded yet.', response.data)
-        mock_list_pkgs.assert_called_once()
+    # --- API Integration Tests ---
 
-    def test_06_view_igs_with_packages(self):
-        self.create_mock_tgz('hl7.fhir.us.core-6.1.0.tgz', {'package/package.json': {'name': 'hl7.fhir.us.core', 'version': '6.1.0'}})
-        response = self.client.get('/view-igs')
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'hl7.fhir.us.core', response.data)
-        self.assertIn(b'6.1.0', response.data)
-        self.assertIn(b'<th>Package Name</th>', response.data)
-
-    @patch('app.render_template')
-    def test_07_push_igs_page(self, mock_render_template):
-        mock_render_template.return_value = "Mock Render"
-        response = self.client.get('/push-igs')
-        self.assertEqual(response.status_code, 200)
-        mock_render_template.assert_called()
-        call_args, call_kwargs = mock_render_template.call_args
-        self.assertEqual(call_args[0], 'cp_push_igs.html')
-
-    # --- UI Form Tests ---
-
-    @patch('app.services.import_package_and_dependencies')
-    def test_10_import_ig_form_success(self, mock_import):
-        mock_import.return_value = {'requested': ('hl7.fhir.us.core', '6.1.0'), 'processed': {('hl7.fhir.us.core', '6.1.0')}, 'downloaded': {('hl7.fhir.us.core', '6.1.0'): 'path/pkg.tgz'}, 'all_dependencies': {}, 'dependencies': [], 'errors': []}
-        response = self.client.post('/import-ig', data={'package_name': 'hl7.fhir.us.core', 'package_version': '6.1.0', 'dependency_mode': 'recursive'}, follow_redirects=True)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Successfully downloaded hl7.fhir.us.core#6.1.0 and dependencies! Mode: recursive', response.data)
-        mock_import.assert_called_once_with('hl7.fhir.us.core', '6.1.0', dependency_mode='recursive')
-
-    @patch('app.services.import_package_and_dependencies')
-    def test_11_import_ig_form_failure_404(self, mock_import):
-        mock_import.return_value = {'requested': ('invalid.package', '1.0.0'), 'processed': set(), 'downloaded': {}, 'all_dependencies': {}, 'dependencies': [], 'errors': ['HTTP error fetching package: 404 Client Error: Not Found for url: ...']}
-        response = self.client.post('/import-ig', data={'package_name': 'invalid.package', 'package_version': '1.0.0', 'dependency_mode': 'recursive'}, follow_redirects=False)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Package not found on registry (404)', response.data)
-
-    @patch('app.services.import_package_and_dependencies')
-    def test_12_import_ig_form_failure_conn_error(self, mock_import):
-        mock_import.return_value = {'requested': ('conn.error.pkg', '1.0.0'), 'processed': set(), 'downloaded': {}, 'all_dependencies': {}, 'dependencies': [], 'errors': ['Connection error: Cannot connect to registry...']}
-        response = self.client.post('/import-ig', data={'package_name': 'conn.error.pkg', 'package_version': '1.0.0', 'dependency_mode': 'recursive'}, follow_redirects=False)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Could not connect to the FHIR package registry', response.data)
-
-    def test_13_import_ig_form_invalid_input(self):
-        response = self.client.post('/import-ig', data={'package_name': 'invalid@package', 'package_version': '1.0.0', 'dependency_mode': 'recursive'}, follow_redirects=True)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Error in Package Name: Invalid package name format.', response.data)
-
-    @patch('app.services.process_package_file')
-    @patch('app.services.parse_package_filename')
-    def test_20_process_ig_success(self, mock_parse, mock_process):
-        pkg_name = 'hl7.fhir.us.core'
-        pkg_version = '6.1.0'
-        filename = f'{pkg_name}-{pkg_version}.tgz'
-        mock_parse.return_value = (pkg_name, pkg_version)
-        mock_process.return_value = {
-            'resource_types_info': [{'name': 'Patient', 'type': 'Patient', 'is_profile': False, 'must_support': True, 'optional_usage': False}],
-            'must_support_elements': {'Patient': ['Patient.name', 'Patient.identifier:us-ssn']},
-            'examples': {'Patient': ['package/Patient-example.json']},
-            'complies_with_profiles': [],
-            'imposed_profiles': ['http://hl7.org/fhir/StructureDefinition/Patient'],
-            'errors': []
-        }
-        self.create_mock_tgz(filename, {'package/package.json': {'name': pkg_name, 'version': pkg_version}})
-        response = self.client.post('/process-igs', data={'filename': filename}, follow_redirects=False)
-        self.assertEqual(response.status_code, 302)
-        self.assertTrue(response.location.endswith('/view-igs'))
-        with self.client.session_transaction() as sess:
-            self.assertIn(('success', f'Successfully processed {pkg_name}#{pkg_version}!'), sess.get('_flashes', []))
-        mock_parse.assert_called_once_with(filename)
-        mock_process.assert_called_once_with(os.path.join(app.config['FHIR_PACKAGES_DIR'], filename))
-        processed_ig = db.session.query(ProcessedIg).filter_by(package_name=pkg_name, version=pkg_version).first()
-        self.assertIsNotNone(processed_ig)
-        self.assertEqual(processed_ig.package_name, pkg_name)
-        self.assertIn('Patient.name', processed_ig.must_support_elements.get('Patient', []))
-
-    def test_21_process_ig_file_not_found(self):
-        response = self.client.post('/process-igs', data={'filename': 'nonexistent.tgz'}, follow_redirects=True)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Package file not found: nonexistent.tgz', response.data)
-
-    def test_22_delete_ig_success(self):
-        filename = 'hl7.fhir.us.core-6.1.0.tgz'
-        metadata_filename = 'hl7.fhir.us.core-6.1.0.metadata.json'
-        self.create_mock_tgz(filename, {'package/package.json': {'name': 'hl7.fhir.us.core', 'version': '6.1.0'}})
-        metadata_path = os.path.join(app.config['FHIR_PACKAGES_DIR'], metadata_filename)
-        open(metadata_path, 'w').write(json.dumps({'name': 'hl7.fhir.us.core'}))
-        self.assertTrue(os.path.exists(os.path.join(app.config['FHIR_PACKAGES_DIR'], filename)))
-        self.assertTrue(os.path.exists(metadata_path))
-        response = self.client.post('/delete-ig', data={'filename': filename}, follow_redirects=True)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(f'Deleted: {filename}, {metadata_filename}'.encode('utf-8'), response.data)
-        self.assertFalse(os.path.exists(os.path.join(app.config['FHIR_PACKAGES_DIR'], filename)))
-        self.assertFalse(os.path.exists(metadata_path))
-
-    def test_23_unload_ig_success(self):
-        processed_ig = ProcessedIg(package_name='test.pkg', version='1.0', processed_date=datetime.now(timezone.utc), resource_types_info=[], must_support_elements={}, examples={})
-        db.session.add(processed_ig)
-        db.session.commit()
-        ig_id = processed_ig.id
-        self.assertIsNotNone(db.session.get(ProcessedIg, ig_id))
-        response = self.client.post('/unload-ig', data={'ig_id': str(ig_id)}, follow_redirects=True)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Unloaded processed data for test.pkg#1.0', response.data)
-        self.assertIsNone(db.session.get(ProcessedIg, ig_id))
-
-    # --- Phase 2 Tests ---
-
-    @patch('os.path.exists', return_value=True)
-    @patch('tarfile.open')
-    @patch('requests.put')
-    def test_30_load_ig_to_hapi_success(self, mock_requests_put, mock_tarfile_open, mock_os_exists):
+    def test_30_load_ig_to_hapi_integration(self):
+        """Test loading an IG to the containerized HAPI FHIR server"""
         pkg_name = 'hl7.fhir.us.core'
         pkg_version = '6.1.0'
         filename = f'{pkg_name}-{pkg_version}.tgz'
         self.create_mock_tgz(filename, {
             'package/package.json': {'name': pkg_name, 'version': pkg_version},
-            'package/Patient-profile.json': {'resourceType': 'StructureDefinition', 'id': 'us-core-patient'}
+            'package/StructureDefinition-us-core-patient.json': {
+                'resourceType': 'StructureDefinition',
+                'id': 'us-core-patient',
+                'url': 'http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient',
+                'name': 'USCorePatientProfile',
+                'type': 'Patient',
+                'status': 'active'
+            }
         })
-        mock_tar = MagicMock()
-        profile_member = MagicMock(spec=tarfile.TarInfo)
-        profile_member.name = 'package/Patient-profile.json'
-        profile_member.isfile.return_value = True
-        mock_tar.getmembers.return_value = [profile_member]
-        mock_tar.extractfile.return_value = io.BytesIO(json.dumps({'resourceType': 'StructureDefinition', 'id': 'us-core-patient'}).encode('utf-8'))
-        mock_tarfile_open.return_value.__enter__.return_value = mock_tar
-        mock_requests_put.return_value = MagicMock(status_code=200)
+        
+        # Load IG to HAPI
         response = self.client.post(
             '/api/load-ig-to-hapi',
             data=json.dumps({'package_name': pkg_name, 'version': pkg_version}),
-            content_type='application/json'
+            content_type='application/json',
+            headers={'X-API-Key': 'test-api-key'}
         )
+        
         self.assertEqual(response.status_code, 200)
         data = json.loads(response.data)
         self.assertEqual(data['status'], 'success')
-        mock_requests_put.assert_called_once_with(
-            'http://localhost:8080/fhir/StructureDefinition/us-core-patient',
-            json={'resourceType': 'StructureDefinition', 'id': 'us-core-patient'},
-            headers={'Content-Type': 'application/fhir+json'}
-        )
+        
+        # Verify the resource was loaded by querying the HAPI FHIR server directly
+        hapi_response = requests.get(self.container.get_service_url('fhir', 'fhir/StructureDefinition/us-core-patient'))
+        self.assertEqual(hapi_response.status_code, 200)
+        resource = hapi_response.json()
+        self.assertEqual(resource['resourceType'], 'StructureDefinition')
+        self.assertEqual(resource['id'], 'us-core-patient')
 
-    def test_31_load_ig_to_hapi_not_found(self):
-        response = self.client.post(
-            '/api/load-ig-to-hapi',
-            data=json.dumps({'package_name': 'nonexistent', 'version': '1.0'}),
-            content_type='application/json'
-        )
-        self.assertEqual(response.status_code, 404)
-        data = json.loads(response.data)
-        self.assertEqual(data['error'], 'Package not found')
-
-    @patch('os.path.exists', return_value=True)
-    @patch('requests.post')
-    def test_32_api_validate_sample_hapi_success(self, mock_requests_post, mock_os_exists):
-        pkg_name = 'hl7.fhir.us.core'
-        pkg_version = '6.1.0'
-        sample_resource = {
-            'resourceType': 'Patient',
-            'id': 'valid1',
-            'meta': {'profile': ['http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient']},
-            'name': [{'given': ['John'], 'family': 'Doe'}]
-        }
-        mock_requests_post.return_value = MagicMock(
-            status_code=200,
-            json=lambda: {
-                'resourceType': 'OperationOutcome',
-                'issue': [{'severity': 'warning', 'diagnostics': 'Must Support element Patient.identifier missing'}]
-            }
-        )
-        response = self.client.post(
-            '/api/validate-sample',
-            data=json.dumps({
-                'package_name': pkg_name,
-                'version': pkg_version,
-                'sample_data': json.dumps(sample_resource),
-                'mode': 'single',
-                'include_dependencies': True
-            }),
-            content_type='application/json',
-            headers={'X-API-Key': 'test-api-key'}
-        )
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertTrue(data['valid'])
-        self.assertEqual(data['warnings'], ['Must Support element Patient.identifier missing'])
-        mock_requests_post.assert_called_once_with(
-            'http://localhost:8080/fhir/Patient/$validate?profile=http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient',
-            json=sample_resource,
-            headers={'Content-Type': 'application/fhir+json', 'Accept': 'application/fhir+json'},
-            timeout=10
-        )
-
-    @patch('os.path.exists', return_value=True)
-    @patch('requests.post', side_effect=requests.ConnectionError("HAPI down"))
-    @patch('services.navigate_fhir_path')
-    def test_33_api_validate_sample_hapi_fallback(self, mock_navigate_fhir_path, mock_requests_post, mock_os_exists):
-        pkg_name = 'hl7.fhir.us.core'
-        pkg_version = '6.1.0'
-        sample_resource = {
-            'resourceType': 'Patient',
-            'id': 'valid1',
-            'meta': {'profile': ['http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient']}
-        }
-        mock_navigate_fhir_path.return_value = None
-        self.create_mock_tgz(f'{pkg_name}-{pkg_version}.tgz', {
-            'package/package.json': {'name': pkg_name, 'version': pkg_version},
-            'package/StructureDefinition-us-core-patient.json': {
-                'resourceType': 'StructureDefinition',
-                'snapshot': {'element': [{'path': 'Patient.name', 'min': 1}, {'path': 'Patient.identifier', 'mustSupport': True}]}
-            }
-        })
-        response = self.client.post(
-            '/api/validate-sample',
-            data=json.dumps({
-                'package_name': pkg_name,
-                'version': pkg_version,
-                'sample_data': json.dumps(sample_resource),
-                'mode': 'single',
-                'include_dependencies': True
-            }),
-            content_type='application/json',
-            headers={'X-API-Key': 'test-api-key'}
-        )
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertFalse(data['valid'])
-        self.assertIn('Required element Patient.name missing', data['errors'])
-        self.assertIn('HAPI validation failed', [d['issue'] for d in data['details']])
-
-    # --- Phase 3 Tests ---
-
-    @patch('requests.get')
-    def test_34_hapi_status_check(self, mock_requests_get):
-        mock_requests_get.return_value = MagicMock(status_code=200, json=lambda: {'resourceType': 'CapabilityStatement'})
-        response = self.client.get('/fhir/metadata')
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertEqual(data['resourceType'], 'CapabilityStatement')
-        mock_requests_get.side_effect = requests.ConnectionError("HAPI down")
-        response = self.client.get('/fhir/metadata')
-        self.assertEqual(response.status_code, 503)
-        data = json.loads(response.data)
-        self.assertIn('Unable to connect to HAPI FHIR server', data['error'])
-
-    def test_35_validate_sample_ui_rendering(self):
-        pkg_name = 'hl7.fhir.us.core'
-        pkg_version = '6.1.0'
-        sample_resource = {
-            'resourceType': 'Patient',
-            'id': 'test',
-            'meta': {'profile': ['http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient']}
-        }
-        self.create_mock_tgz(f'{pkg_name}-{pkg_version}.tgz', {
-            'package/package.json': {'name': pkg_name, 'version': pkg_version},
-            'package/StructureDefinition-us-core-patient.json': {
-                'resourceType': 'StructureDefinition',
-                'snapshot': {'element': [{'path': 'Patient.name', 'min': 1}, {'path': 'Patient.identifier', 'mustSupport': True}]}
-            }
-        })
-        response = self.client.post(
-            '/api/validate-sample',
-            data=json.dumps({
-                'package_name': pkg_name,
-                'version': pkg_version,
-                'sample_data': json.dumps(sample_resource),
-                'mode': 'single',
-                'include_dependencies': True
-            }),
-            content_type='application/json',
-            headers={'X-API-Key': 'test-api-key'}
-        )
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertFalse(data['valid'])
-        self.assertIn('Required element Patient.name missing', data['errors'])
-        self.assertIn('Must Support element Patient.identifier missing', data['warnings'])
-        response = self.client.get('/validate-sample')
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'us-core-patient', response.data)
-
-    def test_36_must_support_consistency(self):
+    def test_31_validate_sample_with_hapi_integration(self):
+        """Test validating a sample against the containerized HAPI FHIR server"""
+        # First, load the necessary StructureDefinition
         pkg_name = 'hl7.fhir.us.core'
         pkg_version = '6.1.0'
         filename = f'{pkg_name}-{pkg_version}.tgz'
@@ -418,15 +409,37 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
             'package/package.json': {'name': pkg_name, 'version': pkg_version},
             'package/StructureDefinition-us-core-patient.json': {
                 'resourceType': 'StructureDefinition',
-                'snapshot': {'element': [{'path': 'Patient.name', 'min': 1}, {'path': 'Patient.identifier', 'mustSupport': True, 'sliceName': 'us-ssn'}]}
+                'id': 'us-core-patient',
+                'url': 'http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient',
+                'name': 'USCorePatientProfile',
+                'type': 'Patient',
+                'status': 'active',
+                'snapshot': {
+                    'element': [
+                        {'path': 'Patient', 'min': 1, 'max': '1'},
+                        {'path': 'Patient.name', 'min': 1, 'max': '*'},
+                        {'path': 'Patient.identifier', 'min': 0, 'max': '*', 'mustSupport': True}
+                    ]
+                }
             }
         })
-        services.process_package_file(os.path.join(app.config['FHIR_PACKAGES_DIR'], filename))
+        
+        # Load IG to HAPI
+        self.client.post(
+            '/api/load-ig-to-hapi',
+            data=json.dumps({'package_name': pkg_name, 'version': pkg_version}),
+            content_type='application/json',
+            headers={'X-API-Key': 'test-api-key'}
+        )
+        
+        # Validate a sample that's missing a required element
         sample_resource = {
             'resourceType': 'Patient',
-            'id': 'test',
+            'id': 'test-patient',
             'meta': {'profile': ['http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient']}
+            # Missing required 'name' element
         }
+        
         response = self.client.post(
             '/api/validate-sample',
             data=json.dumps({
@@ -439,18 +452,68 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
             content_type='application/json',
             headers={'X-API-Key': 'test-api-key'}
         )
+        
         self.assertEqual(response.status_code, 200)
         data = json.loads(response.data)
-        self.assertIn('Must Support element Patient.identifier missing', data['warnings'])
-        with self.app_context:
-            ig = ProcessedIg.query.filter_by(package_name=pkg_name, version=pkg_version).first()
-            self.assertIsNotNone(ig)
-            must_support_paths = ig.must_support_elements.get('Patient', [])
-            self.assertIn('Patient.identifier:us-ssn', must_support_paths)
-        response = self.client.get(f'/view-ig/{ig.id}')
+        self.assertFalse(data['valid'])
+        # Check for validation error related to missing name
+        found_name_error = any('name' in error for error in data['errors'])
+        self.assertTrue(found_name_error, f"Expected error about missing name element, got: {data['errors']}")
+
+    def test_32_push_ig_to_hapi_integration(self):
+        """Test pushing multiple resources from an IG to the containerized HAPI FHIR server"""
+        pkg_name = 'test.push.pkg'
+        pkg_version = '1.0.0'
+        filename = f'{pkg_name}-{pkg_version}.tgz'
+        
+        # Create a test package with multiple resources
+        self.create_mock_tgz(filename, {
+            'package/package.json': {'name': pkg_name, 'version': pkg_version},
+            'package/Patient-test1.json': {
+                'resourceType': 'Patient',
+                'id': 'test1',
+                'name': [{'family': 'Test', 'given': ['Patient']}]
+            },
+            'package/Observation-test1.json': {
+                'resourceType': 'Observation',
+                'id': 'test1',
+                'status': 'final',
+                'code': {'coding': [{'system': 'http://loinc.org', 'code': '12345-6'}]}
+            }
+        })
+        
+        # Push the IG to HAPI
+        response = self.client.post(
+            '/api/push-ig',
+            data=json.dumps({
+                'package_name': pkg_name,
+                'version': pkg_version,
+                'fhir_server_url': self.container.get_service_url('fhir', 'fhir'),
+                'include_dependencies': False
+            }),
+            content_type='application/json',
+            headers={'X-API-Key': 'test-api-key', 'Accept': 'application/x-ndjson'}
+        )
+        
         self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Patient.identifier:us-ssn', response.data)
-        self.assertIn(b'list-group-item-warning', response.data)
+        streamed_data = parse_ndjson(response.data)
+        complete_msg = next((item for item in streamed_data if item.get('type') == 'complete'), None)
+        self.assertIsNotNone(complete_msg, "Complete message not found in streamed response")
+        summary = complete_msg.get('data', {})
+        self.assertTrue(summary.get('success_count') >= 2, f"Expected at least 2 successful resources, got {summary.get('success_count')}")
+        
+        # Verify resources were loaded by querying the HAPI FHIR server directly
+        patient_response = requests.get(self.container.get_service_url('fhir', 'fhir/Patient/test1'))
+        self.assertEqual(patient_response.status_code, 200)
+        patient = patient_response.json()
+        self.assertEqual(patient['resourceType'], 'Patient')
+        self.assertEqual(patient['id'], 'test1')
+        
+        observation_response = requests.get(self.container.get_service_url('fhir', 'fhir/Observation/test1'))
+        self.assertEqual(observation_response.status_code, 200)
+        observation = observation_response.json()
+        self.assertEqual(observation['resourceType'], 'Observation')
+        self.assertEqual(observation['id'], 'test1')
 
     # --- Existing API Tests ---
 
@@ -515,7 +578,7 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
         pkg_name = 'push.test.pkg'
         pkg_version = '1.0.0'
         filename = f'{pkg_name}-{pkg_version}.tgz'
-        fhir_server_url = 'http://fake-fhir.com/baseR4'
+        fhir_server_url = self.container.get_service_url('fhir', 'fhir')
         mock_get_metadata.return_value = {'imported_dependencies': []}
         mock_tar = MagicMock()
         mock_patient = {'resourceType': 'Patient', 'id': 'pat1'}
@@ -564,225 +627,22 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
         self.assertEqual(len(summary.get('failed_details')), 0)
         mock_os_exists.assert_called_with(os.path.join(self.test_packages_dir, filename))
 
-    @patch('os.path.exists', return_value=True)
-    @patch('app.services.get_package_metadata')
-    @patch('tarfile.open')
-    @patch('requests.Session')
-    def test_51_api_push_ig_with_failures(self, mock_session, mock_tarfile_open, mock_get_metadata, mock_os_exists):
-        pkg_name = 'push.fail.pkg'
-        pkg_version = '1.0.0'
-        filename = f'{pkg_name}-{pkg_version}.tgz'
-        fhir_server_url = 'http://fail-fhir.com/baseR4'
-        mock_get_metadata.return_value = {'imported_dependencies': []}
-        mock_tar = MagicMock()
-        mock_ok_res = {'resourceType': 'Patient', 'id': 'ok1'}
-        mock_fail_res = {'resourceType': 'Observation', 'id': 'fail1'}
-        ok_member = MagicMock(spec=tarfile.TarInfo)
-        ok_member.name = 'package/Patient-ok1.json'
-        ok_member.isfile.return_value = True
-        fail_member = MagicMock(spec=tarfile.TarInfo)
-        fail_member.name = 'package/Observation-fail1.json'
-        fail_member.isfile.return_value = True
-        mock_tar.getmembers.return_value = [ok_member, fail_member]
-        def mock_extractfile(member):
-            if member.name == 'package/Patient-ok1.json':
-                return io.BytesIO(json.dumps(mock_ok_res).encode('utf-8'))
-            if member.name == 'package/Observation-fail1.json':
-                return io.BytesIO(json.dumps(mock_fail_res).encode('utf-8'))
-            return None
-        mock_tar.extractfile.side_effect = mock_extractfile
-        mock_tarfile_open.return_value.__enter__.return_value = mock_tar
-        mock_session_instance = MagicMock()
-        mock_ok_response = MagicMock(status_code=200)
-        mock_ok_response.raise_for_status.return_value = None
-        mock_fail_http_response = MagicMock(status_code=400)
-        mock_fail_http_response.json.return_value = {'resourceType': 'OperationOutcome', 'issue': [{'severity': 'error', 'diagnostics': 'Validation failed'}]}
-        mock_fail_exception = requests.exceptions.HTTPError(response=mock_fail_http_response)
-        mock_fail_http_response.raise_for_status.side_effect = mock_fail_exception
-        mock_session_instance.put.side_effect = [mock_ok_response, mock_fail_http_response]
-        mock_session.return_value = mock_session_instance
-        self.create_mock_tgz(filename, {'package/dummy.txt': 'content'})
-        response = self.client.post(
-            '/api/push-ig',
-            data=json.dumps({
-                'package_name': pkg_name,
-                'version': pkg_version,
-                'fhir_server_url': fhir_server_url,
-                'include_dependencies': False,
-                'api_key': 'test-api-key'
-            }),
-            content_type='application/json',
-            headers={'X-API-Key': 'test-api-key', 'Accept': 'application/x-ndjson'}
-        )
-        self.assertEqual(response.status_code, 200)
-        streamed_data = parse_ndjson(response.data)
-        complete_msg = next((item for item in streamed_data if item.get('type') == 'complete'), None)
-        self.assertIsNotNone(complete_msg)
-        summary = complete_msg.get('data', {})
-        self.assertEqual(summary.get('status'), 'partial')
-        self.assertEqual(summary.get('success_count'), 1)
-        self.assertEqual(summary.get('failure_count'), 1)
-        self.assertEqual(len(summary.get('failed_details')), 1)
-        self.assertEqual(summary['failed_details'][0].get('resource'), 'Observation/fail1')
-        self.assertIn('Validation failed', summary['failed_details'][0].get('error', ''))
-        mock_os_exists.assert_called_with(os.path.join(self.test_packages_dir, filename))
-
-    @patch('os.path.exists', return_value=True)
-    @patch('app.services.get_package_metadata')
-    @patch('tarfile.open')
-    @patch('requests.Session')
-    def test_52_api_push_ig_with_dependency(self, mock_session, mock_tarfile_open, mock_get_metadata, mock_os_exists):
-        main_pkg_name = 'main.dep.pkg'
-        main_pkg_ver = '1.0'
-        main_filename = f'{main_pkg_name}-{main_pkg_ver}.tgz'
-        dep_pkg_name = 'dep.pkg'
-        dep_pkg_ver = '1.0'
-        dep_filename = f'{dep_pkg_name}-{dep_pkg_ver}.tgz'
-        fhir_server_url = 'http://dep-fhir.com/baseR4'
-        self.create_mock_tgz(main_filename, {'package/Patient-main.json': {'resourceType': 'Patient', 'id': 'main'}})
-        self.create_mock_tgz(dep_filename, {'package/Observation-dep.json': {'resourceType': 'Observation', 'id': 'dep'}})
-        mock_get_metadata.return_value = {'imported_dependencies': [{'name': dep_pkg_name, 'version': dep_pkg_ver}]}
-        mock_main_tar = MagicMock()
-        main_member = MagicMock(spec=tarfile.TarInfo)
-        main_member.name = 'package/Patient-main.json'
-        main_member.isfile.return_value = True
-        mock_main_tar.getmembers.return_value = [main_member]
-        mock_main_tar.extractfile.return_value = io.BytesIO(json.dumps({'resourceType': 'Patient', 'id': 'main'}).encode('utf-8'))
-        mock_dep_tar = MagicMock()
-        dep_member = MagicMock(spec=tarfile.TarInfo)
-        dep_member.name = 'package/Observation-dep.json'
-        dep_member.isfile.return_value = True
-        mock_dep_tar.getmembers.return_value = [dep_member]
-        mock_dep_tar.extractfile.return_value = io.BytesIO(json.dumps({'resourceType': 'Observation', 'id': 'dep'}).encode('utf-8'))
-        def tar_opener(path, mode):
-            mock_tar_ctx = MagicMock()
-            if main_filename in path:
-                mock_tar_ctx.__enter__.return_value = mock_main_tar
-            elif dep_filename in path:
-                mock_tar_ctx.__enter__.return_value = mock_dep_tar
-            else:
-                empty_mock_tar = MagicMock()
-                empty_mock_tar.getmembers.return_value = []
-                mock_tar_ctx.__enter__.return_value = empty_mock_tar
-            return mock_tar_ctx
-        mock_tarfile_open.side_effect = tar_opener
-        mock_session_instance = MagicMock()
-        mock_put_response = MagicMock(status_code=200)
-        mock_put_response.raise_for_status.return_value = None
-        mock_session_instance.put.return_value = mock_put_response
-        mock_session.return_value = mock_session_instance
-        response = self.client.post(
-            '/api/push-ig',
-            data=json.dumps({
-                'package_name': main_pkg_name,
-                'version': main_pkg_ver,
-                'fhir_server_url': fhir_server_url,
-                'include_dependencies': True,
-                'api_key': 'test-api-key'
-            }),
-            content_type='application/json',
-            headers={'X-API-Key': 'test-api-key', 'Accept': 'application/x-ndjson'}
-        )
-        self.assertEqual(response.status_code, 200)
-        streamed_data = parse_ndjson(response.data)
-        complete_msg = next((item for item in streamed_data if item.get('type') == 'complete'), None)
-        self.assertIsNotNone(complete_msg)
-        summary = complete_msg.get('data', {})
-        self.assertEqual(summary.get('status'), 'success')
-        self.assertEqual(summary.get('success_count'), 2)
-        self.assertEqual(len(summary.get('pushed_packages_summary')), 2)
-        mock_os_exists.assert_any_call(os.path.join(self.test_packages_dir, main_filename))
-        mock_os_exists.assert_any_call(os.path.join(self.test_packages_dir, dep_filename))
-
-    # --- Helper Route Tests ---
-
-    @patch('app.ProcessedIg.query')
-    @patch('app.services.find_and_extract_sd')
-    @patch('os.path.exists')
-    def test_60_get_structure_definition_success(self, mock_exists, mock_find_sd, mock_query):
-        pkg_name = 'struct.test'
-        pkg_version = '1.0'
-        resource_type = 'Patient'
-        mock_exists.return_value = True
-        mock_sd_data = {'resourceType': 'StructureDefinition', 'snapshot': {'element': [{'id': 'Patient.name', 'min': 1}, {'id': 'Patient.birthDate', 'mustSupport': True}]}}
-        mock_find_sd.return_value = (mock_sd_data, 'path/to/sd.json')
-        mock_processed_ig = MagicMock()
-        mock_processed_ig.must_support_elements = {resource_type: ['Patient.birthDate']}
-        mock_query.filter_by.return_value.first.return_value = mock_processed_ig
-        response = self.client.get(f'/get-structure?package_name={pkg_name}&package_version={pkg_version}&resource_type={resource_type}')
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertEqual(data['must_support_paths'], ['Patient.birthDate'])
-
-    @patch('app.services.import_package_and_dependencies')
-    @patch('app.services.find_and_extract_sd')
-    @patch('os.path.exists')
-    def test_61_get_structure_definition_fallback(self, mock_exists, mock_find_sd, mock_import):
-        pkg_name = 'struct.test'
-        pkg_version = '1.0'
-        core_pkg_name, core_pkg_version = services.CANONICAL_PACKAGE
-        resource_type = 'Observation'
-        def exists_side_effect(path):
-            return True
-        mock_exists.side_effect = exists_side_effect
-        mock_core_sd_data = {'resourceType': 'StructureDefinition', 'snapshot': {'element': [{'id': 'Observation.status'}]}}
-        def find_sd_side_effect(path, identifier, profile_url=None):
-            if f"{pkg_name}-{pkg_version}.tgz" in path:
-                return (None, None)
-            if f"{core_pkg_name}-{core_pkg_version}.tgz" in path:
-                return (mock_core_sd_data, 'path/obs.json')
-            return (None, None)
-        mock_find_sd.side_effect = find_sd_side_effect
-        with patch('app.ProcessedIg.query') as mock_query:
-            mock_query.filter_by.return_value.first.return_value = None
-            response = self.client.get(f'/get-structure?package_name={pkg_name}&package_version={pkg_version}&resource_type={resource_type}')
-            self.assertEqual(response.status_code, 200)
-            data = json.loads(response.data)
-            self.assertTrue(data['fallback_used'])
-
-    @patch('app.services.find_and_extract_sd', return_value=(None, None))
-    @patch('app.services.import_package_and_dependencies')
-    @patch('os.path.exists')
-    def test_62_get_structure_definition_not_found_anywhere(self, mock_exists, mock_import, mock_find_sd):
-        pkg_name = 'no.sd.pkg'
-        pkg_version = '1.0'
-        core_pkg_name, core_pkg_version = services.CANONICAL_PACKAGE
-        def exists_side_effect(path):
-            if f"{pkg_name}-{pkg_version}.tgz" in path:
-                return True
-            if f"{core_pkg_name}-{core_pkg_version}.tgz" in path:
-                return False
-            return False
-        mock_exists.side_effect = exists_side_effect
-        mock_import.return_value = {'errors': ['Download failed'], 'downloaded': False}
-        response = self.client.get(f'/get-structure?package_name={pkg_name}&package_version={pkg_version}&resource_type=Whatever')
-        self.assertEqual(response.status_code, 500)
-        data = json.loads(response.data)
-        self.assertIn('failed to download core package', data['error'])
-
-    def test_63_get_example_content_success(self):
-        pkg_name = 'example.test'
-        pkg_version = '1.0'
-        filename = f"{pkg_name}-{pkg_version}.tgz"
-        example_path = 'package/Patient-example.json'
-        example_content = {'resourceType': 'Patient', 'id': 'example'}
-        self.create_mock_tgz(filename, {example_path: example_content})
-        response = self.client.get(f'/get-example?package_name={pkg_name}&package_version={pkg_version}&filename={example_path}')
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertEqual(data, example_content)
-
-    def test_64_get_package_metadata_success(self):
-        pkg_name = 'metadata.test'
-        pkg_version = '1.0'
-        metadata_filename = f"{pkg_name}-{pkg_version}.metadata.json"
-        metadata_content = {'package_name': pkg_name, 'version': pkg_version, 'dependency_mode': 'tree-shaking'}
-        metadata_path = os.path.join(app.config['FHIR_PACKAGES_DIR'], metadata_filename)
-        open(metadata_path, 'w').write(json.dumps(metadata_content))
-        response = self.client.get(f'/get-package-metadata?package_name={pkg_name}&version={pkg_version}')
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertEqual(data.get('dependency_mode'), 'tree-shaking')
-
+    # --- Helper method to debug container issues ---
+    
+    def test_99_print_container_logs_on_failure(self):
+        """Helper test that prints container logs in case of failures"""
+        # This test should always pass but will print logs if other tests fail
+        try:
+            if hasattr(self, 'container') and self.container.containers_up:
+                for service_name in ['fhir', 'db', 'fhirflare']:
+                    if service_name in self.container._container_ids:
+                        print(f"\n=== Logs for {service_name} ===")
+                        print(self.container.get_logs(service_name))
+        except Exception as e:
+            print(f"Error getting container logs: {e}")
+        
+        # This assertion always passes - this test is just for debug info
+        self.assertTrue(True)
+        
 if __name__ == '__main__':
-    unittest.main()
+    unittest.main()

tests/upload_samples/Bundle-transaction-ex.json

@@ -0,0 +1,431 @@
+{
+  "resourceType" : "Bundle",
+  "id" : "transaction-ex",
+  "type" : "transaction",
+  "entry" : [{
+    "fullUrl" : "urn:uuid:64eb2d39-8da6-4c1d-b4c7-a6d3e916cd5b",
+    "resource" : {
+      "resourceType" : "Patient",
+      "id" : "example-patient",
+      "meta" : {
+        "profile" : ["urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient"]
+      },
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Patient_example-patient\"> </a>Juan Dela Cruz is a male patient born on 1 January 1980, residing in Manila, NCR, Philippines.</div>"
+      },
+      "extension" : [{
+        "extension" : [{
+          "url" : "code",
+          "valueCodeableConcept" : {
+            "coding" : [{
+              "system" : "urn:iso:std:iso:3166",
+              "code" : "PH",
+              "display" : "Philippines"
+            }]
+          }
+        },
+        {
+          "url" : "period",
+          "valuePeriod" : {
+            "start" : "2020-01-01",
+            "end" : "2023-01-01"
+          }
+        }],
+        "url" : "http://hl7.org/fhir/StructureDefinition/patient-nationality"
+      },
+      {
+        "url" : "http://hl7.org/fhir/StructureDefinition/patient-religion",
+        "valueCodeableConcept" : {
+          "coding" : [{
+            "system" : "http://terminology.hl7.org/CodeSystem/v3-ReligiousAffiliation",
+            "code" : "1007",
+            "display" : "Atheism"
+          }]
+        }
+      },
+      {
+        "url" : "urn://example.com/ph-core/fhir/StructureDefinition/indigenous-people",
+        "valueBoolean" : true
+      },
+      {
+        "url" : "urn://example.com/ph-core/fhir/StructureDefinition/indigenous-group",
+        "valueCodeableConcept" : {
+          "coding" : [{
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/indigenous-groups",
+            "code" : "Ilongots",
+            "display" : "Ilongots"
+          }]
+        }
+      },
+      {
+        "url" : "urn://example.com/ph-core/fhir/StructureDefinition/race",
+        "valueCodeableConcept" : {
+          "coding" : [{
+            "system" : "http://terminology.hl7.org/CodeSystem/v3-Race",
+            "code" : "2036-2",
+            "display" : "Filipino"
+          }]
+        }
+      }],
+      "identifier" : [{
+        "system" : "http://philhealth.gov.ph/fhir/Identifier/philhealth-id",
+        "value" : "63-584789845-5"
+      }],
+      "active" : true,
+      "name" : [{
+        "family" : "Dela Cruz",
+        "given" : ["Juan Jane",
+        "Dela Fuente"]
+      }],
+      "gender" : "male",
+      "birthDate" : "1985-06-15",
+      "address" : [{
+        "extension" : [{
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/city-municipality",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "1380200000",
+            "display" : "City of Las Piñas"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/city-municipality",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "1380100000",
+            "display" : "City of Caloocan"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/province",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "0402100000",
+            "display" : "Cavite"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/province",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "0403400000",
+            "display" : "Laguna"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/province",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "0405800000",
+            "display" : "Rizal"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/province",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "1704000000",
+            "display" : "Marinduque"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/province",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "0402100000",
+            "display" : "Cavite"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/province",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "1705100000",
+            "display" : "Occidental Mindoro"
+          }
+        }],
+        "line" : ["123 Mabini Street",
+        "Barangay Malinis"],
+        "city" : "Quezon City",
+        "district" : "NCR",
+        "postalCode" : "1100",
+        "country" : "PH"
+      }]
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "Patient"
+    }
+  },
+  {
+    "fullUrl" : "urn:uuid:60b7132e-7cfd-44bc-83c2-de140dc8aaae",
+    "resource" : {
+      "resourceType" : "Encounter",
+      "id" : "example-encounter",
+      "meta" : {
+        "profile" : ["urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter"]
+      },
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Encounter_example-encounter\"> </a>An ambulatory encounter for Juan Dela Cruz that has been completed.</div>"
+      },
+      "status" : "finished",
+      "class" : {
+        "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode",
+        "code" : "AMB",
+        "display" : "ambulatory"
+      },
+      "subject" : {
+        "reference" : "urn:uuid:64eb2d39-8da6-4c1d-b4c7-a6d3e916cd5b"
+      }
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "Encounter"
+    }
+  },
+  {
+    "fullUrl" : "urn:uuid:1a391d1e-a068-479a-88e3-e3d52c3a6f64",
+    "resource" : {
+      "resourceType" : "Condition",
+      "id" : "example-condition",
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Condition_example-condition\"> </a>Juan Dela Cruz has an active diagnosis of Type 2 Diabetes Mellitus.</div>"
+      },
+      "clinicalStatus" : {
+        "coding" : [{
+          "system" : "http://terminology.hl7.org/CodeSystem/condition-clinical",
+          "code" : "active",
+          "display" : "Active"
+        }]
+      },
+      "code" : {
+        "coding" : [{
+          "system" : "http://snomed.info/sct",
+          "code" : "44054006",
+          "display" : "Diabetes mellitus type 2"
+        }]
+      },
+      "subject" : {
+        "reference" : "urn:uuid:64eb2d39-8da6-4c1d-b4c7-a6d3e916cd5b"
+      },
+      "encounter" : {
+        "reference" : "urn:uuid:60b7132e-7cfd-44bc-83c2-de140dc8aaae"
+      }
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "Condition"
+    }
+  },
+  {
+    "fullUrl" : "urn:uuid:024dcb47-cc23-407a-839b-b4634e95abae",
+    "resource" : {
+      "resourceType" : "Medication",
+      "id" : "example-medication",
+      "meta" : {
+        "profile" : ["urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication"]
+      },
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Medication_example-medication\"> </a>A medication resource has been created, but no specific details are provided.</div>"
+      }
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "Medication"
+    }
+  },
+  {
+    "fullUrl" : "urn:uuid:013f46df-f245-4a2f-beaf-9eb2c47fb1a3",
+    "resource" : {
+      "resourceType" : "Observation",
+      "id" : "blood-pressure",
+      "meta" : {
+        "profile" : ["urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation",
+        "http://hl7.org/fhir/StructureDefinition/vitalsigns",
+        "http://hl7.org/fhir/StructureDefinition/bp"]
+      },
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_blood-pressure\"> </a>On 17 September 2012, a blood pressure observation was recorded for Juan Dela Cruz. The systolic pressure was 107 mmHg (Normal), and the diastolic pressure was 60 mmHg (Below low normal). The measurement was taken from the right arm and performed by a practitioner.</div>"
+      },
+      "identifier" : [{
+        "system" : "urn:ietf:rfc:3986",
+        "value" : "urn:uuid:187e0c12-8dd2-67e2-99b2-bf273c878281"
+      }],
+      "basedOn" : [{
+        "identifier" : {
+          "system" : "https://acme.org/identifiers",
+          "value" : "1234"
+        }
+      }],
+      "status" : "final",
+      "category" : [{
+        "coding" : [{
+          "system" : "http://terminology.hl7.org/CodeSystem/observation-category",
+          "code" : "vital-signs",
+          "display" : "Vital Signs"
+        }]
+      }],
+      "code" : {
+        "coding" : [{
+          "system" : "http://loinc.org",
+          "code" : "85354-9",
+          "display" : "Blood pressure panel with all children optional"
+        }],
+        "text" : "Blood pressure systolic & diastolic"
+      },
+      "subject" : {
+        "reference" : "urn:uuid:64eb2d39-8da6-4c1d-b4c7-a6d3e916cd5b"
+      },
+      "effectiveDateTime" : "2012-09-17",
+      "performer" : [{
+        "reference" : "urn:uuid:a036fd4c-c950-497b-8905-0d2c5ec6f1d4"
+      }],
+      "interpretation" : [{
+        "coding" : [{
+          "system" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
+          "code" : "L",
+          "display" : "Low"
+        }],
+        "text" : "Below low normal"
+      }],
+      "bodySite" : {
+        "coding" : [{
+          "system" : "http://snomed.info/sct",
+          "code" : "85050009",
+          "display" : "Bone structure of humerus"
+        }]
+      },
+      "component" : [{
+        "code" : {
+          "coding" : [{
+            "system" : "http://loinc.org",
+            "code" : "8480-6",
+            "display" : "Systolic blood pressure"
+          }]
+        },
+        "valueQuantity" : {
+          "value" : 107,
+          "unit" : "mmHg",
+          "system" : "http://unitsofmeasure.org",
+          "code" : "mm[Hg]"
+        },
+        "interpretation" : [{
+          "coding" : [{
+            "system" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
+            "code" : "N",
+            "display" : "Normal"
+          }],
+          "text" : "Normal"
+        }]
+      },
+      {
+        "code" : {
+          "coding" : [{
+            "system" : "http://loinc.org",
+            "code" : "8462-4",
+            "display" : "Diastolic blood pressure"
+          }]
+        },
+        "valueQuantity" : {
+          "value" : 60,
+          "unit" : "mmHg",
+          "system" : "http://unitsofmeasure.org",
+          "code" : "mm[Hg]"
+        },
+        "interpretation" : [{
+          "coding" : [{
+            "system" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
+            "code" : "L",
+            "display" : "Low"
+          }],
+          "text" : "Below low normal"
+        }]
+      }]
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "Observation"
+    }
+  },
+  {
+    "fullUrl" : "urn:uuid:b43c67e7-d9c4-48bb-a1b4-55769eeb9066",
+    "resource" : {
+      "resourceType" : "AllergyIntolerance",
+      "id" : "example-allergy",
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"AllergyIntolerance_example-allergy\"> </a>Juan Dela Cruz has a high criticality, active allergy to Benethamine penicillin.</div>"
+      },
+      "clinicalStatus" : {
+        "coding" : [{
+          "system" : "http://terminology.hl7.org/CodeSystem/allergyintolerance-clinical",
+          "code" : "active",
+          "display" : "Active"
+        }]
+      },
+      "criticality" : "high",
+      "code" : {
+        "coding" : [{
+          "system" : "http://snomed.info/sct",
+          "code" : "294494002",
+          "display" : "Benethamine penicillin allergy"
+        }]
+      },
+      "patient" : {
+        "reference" : "urn:uuid:64eb2d39-8da6-4c1d-b4c7-a6d3e916cd5b"
+      }
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "AllergyIntolerance"
+    }
+  },
+  {
+    "fullUrl" : "urn:uuid:a036fd4c-c950-497b-8905-0d2c5ec6f1d4",
+    "resource" : {
+      "resourceType" : "Practitioner",
+      "id" : "example-practitioner",
+      "meta" : {
+        "profile" : ["urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner"]
+      },
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Practitioner_example-practitioner\"> </a>Dr. Maria Clara Santos is a female practitioner born on May 15, 1985. She resides at 1234 Mabini Street, Manila, NCR, 1000, Philippines. She can be contacted via mobile at +63-912-345-6789 or by email at maria.santos@example.ph.</div>"
+      },
+      "name" : [{
+        "family" : "Santos",
+        "given" : ["Maria",
+        "Clara"]
+      }],
+      "telecom" : [{
+        "system" : "phone",
+        "value" : "+63-912-345-6789",
+        "use" : "mobile"
+      },
+      {
+        "system" : "email",
+        "value" : "maria.santos@example.ph",
+        "use" : "work"
+      }],
+      "address" : [{
+        "use" : "home",
+        "line" : ["1234 Mabini Street"],
+        "city" : "Manila",
+        "state" : "NCR",
+        "postalCode" : "1000",
+        "country" : "PH"
+      }],
+      "gender" : "female",
+      "birthDate" : "1985-05-15"
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "Practitioner"
+    }
+  }]
+}

tests/upload_samples/validation.log

@@ -0,0 +1,25 @@
+2025-07-31 12:34:21,943 - services - DEBUG - Received validate-sample request
+2025-07-31 12:34:21,944 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
+2025-07-31 12:34:21,944 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
+2025-07-31 12:34:21,944 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
+2025-07-31 12:34:21,944 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
+2025-07-31 12:34:21,944 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
+2025-07-31 12:34:21,945 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
+2025-07-31 12:34:21,956 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
+2025-07-31 12:34:21,956 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=False, errors=1, warnings=0
+2025-07-31 12:34:21,957 - werkzeug - INFO - 10.0.0.102 - - [31/Jul/2025 12:34:21] "POST /api/validate-sample HTTP/1.1" 200 -
+2025-07-31 12:34:24,510 - werkzeug - INFO - 10.0.2.245 - - [31/Jul/2025 12:34:24] "GET / HTTP/1.1" 200 -
+2025-07-31 12:34:27,378 - werkzeug - INFO - 10.0.2.245 - - [31/Jul/2025 12:34:27] "GET / HTTP/1.1" 200 -
+2025-07-31 12:34:34,510 - werkzeug - INFO - 10.0.2.245 - - [31/Jul/2025 12:34:34] "GET / HTTP/1.1" 200 -
+2025-07-31 12:34:36,799 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
+2025-07-31 12:34:36,800 - __main__ - DEBUG - Found 8 .tgz files: ['PHCDI.r4-0.1.0.tgz', 'hl7.fhir.uv.ips-1.1.0.tgz', 'hl7.fhir.r4.core-4.0.1.tgz', 'fhir.dicom-2022.4.20221006.tgz', 'hl7.terminology.r4-5.0.0.tgz', 'example.fhir.ph.core.r4-0.1.0.tgz', 'hl7.terminology.r4-6.4.0.tgz', 'hl7.fhir.uv.extensions.r4-5.2.0.tgz']
+2025-07-31 12:34:36,813 - __main__ - DEBUG - Added package: PHCDI.r4#0.1.0
+2025-07-31 12:34:36,837 - __main__ - DEBUG - Added package: hl7.fhir.uv.ips#1.1.0
+2025-07-31 12:34:37,378 - werkzeug - INFO - 10.0.2.245 - - [31/Jul/2025 12:34:37] "GET / HTTP/1.1" 200 -
+2025-07-31 12:34:37,514 - __main__ - DEBUG - Added package: hl7.fhir.r4.core#4.0.1
+2025-07-31 12:34:37,622 - __main__ - DEBUG - Added package: fhir.dicom#2022.4.20221006
+2025-07-31 12:34:38,008 - __main__ - DEBUG - Added package: hl7.terminology.r4#5.0.0
+2025-07-31 12:34:38,015 - __main__ - DEBUG - Added package: example.fhir.ph.core.r4#0.1.0
+2025-07-31 12:34:38,413 - __main__ - DEBUG - Added package: hl7.terminology.r4#6.4.0
+2025-07-31 12:34:38,524 - __main__ - DEBUG - Added package: hl7.fhir.uv.extensions.r4#5.2.0
+2025-07-31 12:34:38,525 - __main__ - DEBUG - Set package choices: [('', 'None'), ('PHCDI.r4#0.1.0', 'PHCDI.r4#0.1.0'), ('example.fhir.ph.core.r4#0.1.0', 'example.fhir.ph.core.r4#0.1.0'), ('fhir.dicom#2022.4.20221006', 'fhir.dicom#2022.4.20221006'), ('hl7.fhir.r4.core#4.0.1', 'hl7.fhir.r4.core#4.0.1'), ('hl7.fhir.uv.extensions.r4#5.2.0', 'hl7.fhir.uv.extensions.r4#5.2.0'), ('hl7.fhir.uv.ips#1.1.0', 'hl7.fhir.uv.ips#1.1.0'), ('hl7.terminology.r4#5.0.0', 'hl7.terminology.r4#5.0.0'), ('hl7.terminology.r4#6.4.0', 'hl7.terminology.r4#6.4.0')]