Merge pull request #24 from Sudo-JHare/V4-Alpha

V4.1 - Merge release

.github/ct/chart-schema.yaml

@@ -0,0 +1,23 @@
+name: str()
+home: str()
+version: str()
+apiVersion: str()
+appVersion: any(str(), num(), required=False)
+type: str()
+dependencies: any(required=False)
+description: str()
+keywords: list(str(), required=False)
+sources: list(str(), required=False)
+maintainers: list(include('maintainer'), required=False)
+icon: str(required=False)
+engine: str(required=False)
+condition: str(required=False)
+tags: str(required=False)
+deprecated: bool(required=False)
+kubeVersion: str(required=False)
+annotations: map(str(), str(), required=False)
+---
+maintainer:
+  name: str()
+  email: str(required=False)
+  url: str(required=False)

.github/ct/config.yaml

@@ -0,0 +1,15 @@
+debug: true
+remote: origin
+chart-yaml-schema: .github/ct/chart-schema.yaml
+validate-maintainers: false
+validate-chart-schema: true
+validate-yaml: true
+check-version-increment: true
+chart-dirs:
+  - charts
+helm-extra-args: --timeout 300s
+upgrade: true
+skip-missing-values: true
+release-label: release
+release-name-template: "helm-v{{ .Version }}"
+target-branch: master

.github/workflows/build-images.yaml

@@ -0,0 +1,84 @@
+name: Build Container Images
+
+on:
+  push:
+    tags:
+      - "image/v*"
+    paths-ignore:
+      - "charts/**"
+  pull_request:
+    branches: [master]
+    paths-ignore:
+      - "charts/**"
+env:
+  IMAGES: docker.io/hapiproject/hapi
+  PLATFORMS: linux/amd64,linux/arm64/v8
+
+jobs:
+  build:
+    name: Build
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Container meta for default (distroless) image
+        id: docker_meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.IMAGES }}
+          tags: |
+            type=match,pattern=image/(.*),group=1,enable=${{github.event_name != 'pull_request'}}
+           
+
+      - name: Container meta for tomcat image
+        id: docker_tomcat_meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.IMAGES }}
+          tags: |
+            type=match,pattern=image/(.*),group=1,enable=${{github.event_name != 'pull_request'}}
+          flavor: |
+            suffix=-tomcat,onlatest=true
+
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v3
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Login to DockerHub
+        uses: docker/login-action@v3
+        if: github.event_name != 'pull_request'
+        with:
+          username: ${{ secrets.DOCKERHUB_USERNAME }}
+          password: ${{ secrets.DOCKERHUB_TOKEN }}
+
+      - name: Cache Docker layers
+        uses: actions/cache@v3
+        with:
+          path: /tmp/.buildx-cache
+          key: ${{ runner.os }}-buildx-${{ github.sha }}
+          restore-keys: |
+            ${{ runner.os }}-buildx-
+
+      - name: Build and push default (distroless) image
+        id: docker_build
+        uses: docker/build-push-action@v5
+        with:
+          cache-from: type=local,src=/tmp/.buildx-cache
+          cache-to: type=local,dest=/tmp/.buildx-cache
+          push: ${{ github.event_name != 'pull_request' }}
+          tags: ${{ steps.docker_meta.outputs.tags }}
+          labels: ${{ steps.docker_meta.outputs.labels }}
+          platforms: ${{ env.PLATFORMS }}
+          target: default
+
+      - name: Build and push tomcat image
+        id: docker_build_tomcat
+        uses: docker/build-push-action@v5
+        with:
+          cache-from: type=local,src=/tmp/.buildx-cache
+          cache-to: type=local,dest=/tmp/.buildx-cache
+          push: ${{ github.event_name != 'pull_request' }}
+          tags: ${{ steps.docker_tomcat_meta.outputs.tags }}
+          labels: ${{ steps.docker_tomcat_meta.outputs.labels }}
+          platforms: ${{ env.PLATFORMS }}
+          target: tomcat

.github/workflows/chart-release.yaml

@@ -0,0 +1,41 @@
+name: Release Charts
+
+on:
+  push:
+    branches:
+      - main
+    paths:
+      - "charts/**"
+
+jobs:
+  release:
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Add workspace as safe directory
+        run: |
+          git config --global --add safe.directory /__w/FHIRFLARE-IG-Toolkit/FHIRFLARE-IG-Toolkit
+
+      - name: Checkout
+        uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # v3.5.2
+        with:
+          fetch-depth: 0
+
+      - name: Configure Git
+        run: |
+          git config user.name "$GITHUB_ACTOR"
+          git config user.email "$GITHUB_ACTOR@users.noreply.github.com"
+
+      - name: Update dependencies
+        run: find charts/ ! -path charts/ -maxdepth 1 -type d -exec helm dependency update {} \;
+
+      - name: Add Helm Repositories
+        run: |
+          helm repo add hapifhir https://hapifhir.github.io/hapi-fhir-jpaserver-starter/
+          helm repo update
+
+      - name: Run chart-releaser
+        uses: helm/chart-releaser-action@be16258da8010256c6e82849661221415f031968 # v1.5.0
+        with:
+          config: .github/ct/config.yaml
+        env:
+          CR_TOKEN: "${{ secrets.GITHUB_TOKEN }}"

.github/workflows/chart-test.yaml

@@ -0,0 +1,73 @@
+name: Lint and Test Charts
+
+on:
+  pull_request:
+    branches:
+      - master
+    paths:
+      - "charts/**"
+
+jobs:
+  lint:
+    runs-on: ubuntu-22.04
+    container: quay.io/helmpack/chart-testing:v3.11.0@sha256:f2fd21d30b64411105c7eafb1862783236a219d29f2292219a09fe94ca78ad2a
+    steps:
+      - name: Install helm-docs
+        working-directory: /tmp
+        env:
+          HELM_DOCS_URL: https://github.com/norwoodj/helm-docs/releases/download/v1.14.2/helm-docs_1.14.2_Linux_x86_64.tar.gz
+        run: |
+          curl -LSs $HELM_DOCS_URL | tar xz && \
+          mv ./helm-docs /usr/local/bin/helm-docs && \
+          chmod +x /usr/local/bin/helm-docs && \
+          helm-docs --version
+
+      - name: Add workspace as safe directory
+        run: |
+          git config --global --add safe.directory /__w/hapi-fhir-jpaserver-starter/hapi-fhir-jpaserver-starter
+
+      - name: Checkout
+        uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
+        with:
+          fetch-depth: 0
+
+      - name: Check if documentation is up-to-date
+        run: helm-docs && git diff --exit-code HEAD
+
+      - name: Run chart-testing (lint)
+        run: ct lint --config .github/ct/config.yaml
+
+  test:
+    runs-on: ubuntu-22.04
+    strategy:
+      matrix:
+        k8s-version: [1.30.8, 1.31.4, 1.32.0]
+    needs:
+      - lint
+    steps:
+      - name: Checkout
+        uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
+        with:
+          fetch-depth: 0
+
+      - name: Set up chart-testing
+        uses: helm/chart-testing-action@e6669bcd63d7cb57cb4380c33043eebe5d111992 # v2.6.1
+
+      - name: Run chart-testing (list-changed)
+        id: list-changed
+        run: |
+          changed=$(ct list-changed --config .github/ct/config.yaml)
+          if [[ -n "$changed" ]]; then
+            echo "::set-output name=changed::true"
+          fi
+
+      - name: Create k8s Kind Cluster
+        uses: helm/kind-action@dda0770415bac9fc20092cacbc54aa298604d140 # v1.8.0
+        if: ${{ steps.list-changed.outputs.changed == 'true' }}
+        with:
+          cluster_name: kind-cluster-k8s-${{ matrix.k8s-version }}
+          node_image: kindest/node:v${{ matrix.k8s-version }}
+
+      - name: Run chart-testing (install)
+        run: ct install --config .github/ct/config.yaml
+        if: ${{ steps.list-changed.outputs.changed == 'true' }}

.github/workflows/docker-publish.yml

@@ -0,0 +1,58 @@
+# This workflow builds and pushes a multi-architecture Docker image to GitHub Container Registry (ghcr.io).
+#
+# The Docker meta step is required because GitHub repository names can contain uppercase letters, but Docker image tags must be lowercase.
+# The docker/metadata-action@v5 normalizes the repository name to lowercase, ensuring the build and push steps use a valid image tag.
+#
+# This workflow builds for both AMD64 and ARM64 architectures using Docker Buildx and QEMU emulation.
+
+name: Build and Push Docker image
+
+on:
+  push:
+    branches:
+      - main
+      - '*'  # This will run the workflow on any branch
+  workflow_dispatch:  # This enables manual triggering
+
+jobs:
+  build-and-push:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v3
+        
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Log in to GitHub Container Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ghcr.io
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Docker meta
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ghcr.io/${{ github.repository }}
+
+      - name: Set normalized image name
+        run: |
+          if [[ "${{ github.ref_name }}" == "main" ]]; then
+            echo "IMAGE_NAME=$(echo ${{ steps.meta.outputs.tags }} | sed 's/:main/:latest/')" >> $GITHUB_ENV
+          else
+            echo "IMAGE_NAME=${{ steps.meta.outputs.tags }}" >> $GITHUB_ENV
+          fi
+
+      - name: Build and push multi-architecture Docker image
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          file: ./docker/Dockerfile
+          platforms: linux/amd64,linux/arm64
+          push: true
+          tags: ${{ env.IMAGE_NAME }}

.github/workflows/jekyll.yml

@@ -0,0 +1,40 @@
+name: Build and Deploy Jekyll site
+
+on:
+  push:
+    branches: [ main, master ]
+  pull_request:
+    branches: [ main, master ]
+  workflow_dispatch:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        working-directory: website
+    
+    steps:
+    - uses: actions/checkout@v3
+    
+    - name: Setup Ruby
+      uses: ruby/setup-ruby@v1
+      with:
+        ruby-version: '3.2'
+        bundler-cache: true
+        working-directory: website
+    
+    - name: Install dependencies
+      run: |
+        bundle install
+    
+    - name: Build site
+      run: bundle exec jekyll build
+
+    - name: Deploy to gh_pages branch
+      uses: peaceiris/actions-gh-pages@v4
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        publish_dir: ./website/_site
+        publish_branch: gh-pages
+        keep_files: true

.gitignore

@@ -0,0 +1,7 @@
+/logs/
+/.pydevproject
+/__pycache__/
+/myenv/
+/tmp/
+/Gemfile.lock
+/_site/

.project

@@ -0,0 +1,23 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>FHIRFLARE-IG-Toolkit</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.python.pydev.PyDevBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.wst.validation.validationbuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.wst.jsdt.core.jsNature</nature>
+		<nature>org.python.pydev.pythonNature</nature>
+	</natures>
+</projectDescription>

.settings/.jsdtscope

@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.JRE_CONTAINER"/>
+	<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.baseBrowserLibrary"/>
+	<classpathentry kind="src" path=""/>
+	<classpathentry kind="output" path=""/>
+</classpath>

.settings/org.eclipse.wst.jsdt.ui.superType.container

@@ -0,0 +1 @@
+org.eclipse.wst.jsdt.launching.JRE_CONTAINER

.settings/org.eclipse.wst.jsdt.ui.superType.name

@@ -0,0 +1 @@
+Global

Build and Run for first time.bat

@@ -2,57 +2,130 @@
 setlocal enabledelayedexpansion
 
 REM --- Configuration ---
-set REPO_URL=https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git
-set CLONE_DIR=hapi-fhir-jpaserver
+set REPO_URL_HAPI=https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git
+set REPO_URL_CANDLE=https://github.com/FHIR/fhir-candle.git
+set CLONE_DIR_HAPI=hapi-fhir-jpaserver
+set CLONE_DIR_CANDLE=fhir-candle
 set SOURCE_CONFIG_DIR=hapi-fhir-setup
 set CONFIG_FILE=application.yaml
 
 REM --- Define Paths ---
 set SOURCE_CONFIG_PATH=..\%SOURCE_CONFIG_DIR%\target\classes\%CONFIG_FILE%
-set DEST_CONFIG_PATH=%CLONE_DIR%\target\classes\%CONFIG_FILE%
+set DEST_CONFIG_PATH=%CLONE_DIR_HAPI%\target\classes\%CONFIG_FILE%
 
-REM === CORRECTED: Prompt for Version ===
+REM --- NEW: Define a variable for the custom FHIR URL and server type ---
+set "CUSTOM_FHIR_URL_VAL="
+set "SERVER_TYPE="
+set "CANDLE_FHIR_VERSION="
+
+REM === MODIFIED: Prompt for Installation Mode ===
 :GetModeChoice
 SET "APP_MODE=" REM Clear the variable first
+echo.
 echo Select Installation Mode:
-echo 1. Standalone (Includes local HAPI FHIR Server - Requires Git & Maven)
-echo 2. Lite (Excludes local HAPI FHIR Server - No Git/Maven needed)
-CHOICE /C 12 /N /M "Enter your choice (1 or 2):"
+echo 1. Lite (Excludes local HAPI FHIR Server - No Git/Maven/Dotnet needed)
+echo 2. Custom URL (Uses a custom FHIR Server - No Git/Maven/Dotnet needed)
+echo 3. Hapi (Includes local HAPI FHIR Server - Requires Git & Maven)
+echo 4. Candle (Includes local FHIR Candle Server - Requires Git & Dotnet)
+CHOICE /C 1234 /N /M "Enter your choice (1, 2, 3, or 4):"
 
+IF ERRORLEVEL 4 (
+    SET APP_MODE=standalone
+    SET SERVER_TYPE=candle
+    goto :GetCandleFhirVersion
+)
+IF ERRORLEVEL 3 (
+    SET APP_MODE=standalone
+    SET SERVER_TYPE=hapi
+    goto :ModeSet
+)
 IF ERRORLEVEL 2 (
+    SET APP_MODE=standalone
+    goto :GetCustomUrl
+)
+IF ERRORLEVEL 1 (
     SET APP_MODE=lite
     goto :ModeSet
 )
-IF ERRORLEVEL 1 (
-    SET APP_MODE=standalone
-    goto :ModeSet
-)
+
 REM If somehow neither was chosen (e.g., Ctrl+C), loop back
 echo Invalid input. Please try again.
 goto :GetModeChoice
 
+:GetCustomUrl
+set "CONFIRMED_URL="
+:PromptUrlLoop
+echo.
+set /p "CUSTOM_URL_INPUT=Please enter the custom FHIR server URL: "
+echo.
+echo You entered: !CUSTOM_URL_INPUT!
+set /p "CONFIRM_URL=Is this URL correct? (Y/N): "
+if /i "!CONFIRM_URL!" EQU "Y" (
+    set "CONFIRMED_URL=!CUSTOM_URL_INPUT!"
+    goto :ConfirmUrlLoop
+) else (
+    goto :PromptUrlLoop
+)
+:ConfirmUrlLoop
+echo.
+echo Please re-enter the URL to confirm it is correct:
+set /p "CUSTOM_URL_INPUT=Re-enter URL: "
+if /i "!CUSTOM_URL_INPUT!" EQU "!CONFIRMED_URL!" (
+    set "CUSTOM_FHIR_URL_VAL=!CUSTOM_URL_INPUT!"
+    echo.
+    echo Custom URL confirmed: !CUSTOM_FHIR_URL_VAL!
+    goto :ModeSet
+) else (
+    echo.
+    echo URLs do not match. Please try again.
+    goto :PromptUrlLoop
+)
+
+:GetCandleFhirVersion
+echo.
+echo Select the FHIR version for the Candle server:
+echo 1. R4 (4.0)
+echo 2. R4B (4.3)
+echo 3. R5 (5.0)
+CHOICE /C 123 /N /M "Enter your choice (1, 2, or 3):"
+IF ERRORLEVEL 3 (
+    SET CANDLE_FHIR_VERSION=r5
+    goto :ModeSet
+)
+IF ERRORLEVEL 2 (
+    SET CANDLE_FHIR_VERSION=r4b
+    goto :ModeSet
+)
+IF ERRORLEVEL 1 (
+    SET CANDLE_FHIR_VERSION=r4
+    goto :ModeSet
+)
+echo Invalid input. Please try again.
+goto :GetCandleFhirVersion
+
 :ModeSet
 IF "%APP_MODE%"=="" (
     echo Invalid choice detected after checks. Exiting.
     goto :eof
 )
 echo Selected Mode: %APP_MODE%
+echo Server Type: %SERVER_TYPE%
 echo.
-REM === END CORRECTION ===
+REM === END MODIFICATION ===
 
 
-REM === Conditionally Execute HAPI Setup ===
-IF "%APP_MODE%"=="standalone" (
-    echo Running Standalone setup including HAPI FHIR...
+REM === Conditionally Execute Server Setup ===
+IF "%SERVER_TYPE%"=="hapi" (
+    echo Running Hapi server setup...
     echo.
-
+    
     REM --- Step 0: Clean up previous clone (optional) ---
-    echo Checking for existing directory: %CLONE_DIR%
-    if exist "%CLONE_DIR%" (
+    echo Checking for existing directory: %CLONE_DIR_HAPI%
+    if exist "%CLONE_DIR_HAPI%" (
         echo Found existing directory, removing it...
-        rmdir /s /q "%CLONE_DIR%"
+        rmdir /s /q "%CLONE_DIR_HAPI%"
         if errorlevel 1 (
-            echo ERROR: Failed to remove existing directory: %CLONE_DIR%
+            echo ERROR: Failed to remove existing directory: %CLONE_DIR_HAPI%
             goto :error
         )
         echo Existing directory removed.
@@ -62,8 +135,8 @@ IF "%APP_MODE%"=="standalone" (
     echo.
 
     REM --- Step 1: Clone the HAPI FHIR server repository ---
-    echo Cloning repository: %REPO_URL% into %CLONE_DIR%...
-    git clone "%REPO_URL%" "%CLONE_DIR%"
+    echo Cloning repository: %REPO_URL_HAPI% into %CLONE_DIR_HAPI%...
+    git clone "%REPO_URL_HAPI%" "%CLONE_DIR_HAPI%"
     if errorlevel 1 (
         echo ERROR: Failed to clone repository. Check Git installation and network connection.
         goto :error
@@ -72,10 +145,10 @@ IF "%APP_MODE%"=="standalone" (
     echo.
 
     REM --- Step 2: Navigate into the cloned directory ---
-    echo Changing directory to %CLONE_DIR%...
-    cd "%CLONE_DIR%"
+    echo Changing directory to %CLONE_DIR_HAPI%...
+    cd "%CLONE_DIR_HAPI%"
     if errorlevel 1 (
-        echo ERROR: Failed to change directory to %CLONE_DIR%.
+        echo ERROR: Failed to change directory to %CLONE_DIR_HAPI%.
         goto :error
     )
     echo Current directory: %CD%
@@ -92,7 +165,7 @@ IF "%APP_MODE%"=="standalone" (
     )
     echo Maven build completed successfully. ErrorLevel: %errorlevel%
     echo.
-
+    
     REM --- Step 4: Copy the configuration file ---
     echo ===> "Starting file copy (Step 4)..."
     echo Copying configuration file...
@@ -118,47 +191,141 @@ IF "%APP_MODE%"=="standalone" (
     echo Current directory: %CD%
     echo.
 
-) ELSE (
-    echo Running Lite setup, skipping HAPI FHIR build...
-    REM Ensure the hapi-fhir-jpaserver directory doesn't exist or is empty if Lite mode is chosen after a standalone attempt
-    if exist "%CLONE_DIR%" (
-       echo Found existing HAPI directory in Lite mode. Removing it to avoid build issues...
-       rmdir /s /q "%CLONE_DIR%"
+) ELSE IF "%SERVER_TYPE%"=="candle" (
+    echo Running FHIR Candle server setup...
+    echo.
+
+    REM --- Step 0: Clean up previous clone (optional) ---
+    echo Checking for existing directory: %CLONE_DIR_CANDLE%
+    if exist "%CLONE_DIR_CANDLE%" (
+        echo Found existing directory, removing it...
+        rmdir /s /q "%CLONE_DIR_CANDLE%"
+        if errorlevel 1 (
+            echo ERROR: Failed to remove existing directory: %CLONE_DIR_CANDLE%
+            goto :error
+        )
+        echo Existing directory removed.
+    ) else (
+        echo Directory does not exist, proceeding with clone.
     )
-    REM Create empty target directories expected by Dockerfile COPY, even if not used
-    mkdir "%CLONE_DIR%\target\classes" 2> nul
-    mkdir "%CLONE_DIR%\custom" 2> nul
-    REM Create a placeholder empty WAR file to satisfy Dockerfile COPY
-    echo. > "%CLONE_DIR%\target\ROOT.war"
-    echo. > "%CLONE_DIR%\target\classes\application.yaml"
+    echo.
+
+    REM --- Step 1: Clone the FHIR Candle server repository ---
+    echo Cloning repository: %REPO_URL_CANDLE% into %CLONE_DIR_CANDLE%...
+    git clone "%REPO_URL_CANDLE%" "%CLONE_DIR_CANDLE%"
+    if errorlevel 1 (
+        echo ERROR: Failed to clone repository. Check Git and Dotnet installation and network connection.
+        goto :error
+    )
+    echo Repository cloned successfully.
+    echo.
+    
+    REM --- Step 2: Navigate into the cloned directory ---
+    echo Changing directory to %CLONE_DIR_CANDLE%...
+    cd "%CLONE_DIR_CANDLE%"
+    if errorlevel 1 (
+        echo ERROR: Failed to change directory to %CLONE_DIR_CANDLE%.
+        goto :error
+    )
+    echo Current directory: %CD%
+    echo.
+
+    REM --- Step 3: Build the FHIR Candle server using Dotnet ---
+    echo ===> "Starting Dotnet build (Step 3)...""
+    dotnet publish -c Release -f net9.0 -o publish
+    echo ===> Dotnet command finished. Checking error level...
+    if errorlevel 1 (
+        echo ERROR: Dotnet build failed. Check Dotnet SDK installation.
+        cd ..
+        goto :error
+    )
+    echo Dotnet build completed successfully. ErrorLevel: %errorlevel%
+    echo.
+    
+    REM --- Step 4: Navigate back to the parent directory ---
+    echo ===> "Changing directory back (Step 4)..."
+    cd ..
+    if errorlevel 1 (
+        echo ERROR: Failed to change back to the parent directory. ErrorLevel: %errorlevel%
+        goto :error
+    )
+    echo Current directory: %CD%
+    echo.
+
+) ELSE (
+    echo Running Lite setup, skipping server build...
+    REM Ensure the server directories don't exist in Lite mode
+    if exist "%CLONE_DIR_HAPI%" (
+       echo Found existing HAPI directory in Lite mode. Removing it to avoid build issues...
+       rmdir /s /q "%CLONE_DIR_HAPI%"
+    )
+    if exist "%CLONE_DIR_CANDLE%" (
+       echo Found existing Candle directory in Lite mode. Removing it to avoid build issues...
+       rmdir /s /q "%CLONE_DIR_CANDLE%"
+    )
+    REM Create empty placeholder files to satisfy Dockerfile COPY commands in Lite mode.
+    mkdir "%CLONE_DIR_HAPI%\target\classes" 2> nul
+    mkdir "%CLONE_DIR_HAPI%\custom" 2> nul
+    echo. > "%CLONE_DIR_HAPI%\target\ROOT.war"
+    echo. > "%CLONE_DIR_HAPI%\target\classes\application.yaml"
+    mkdir "%CLONE_DIR_CANDLE%\publish" 2> nul
+    echo. > "%CLONE_DIR_CANDLE%\publish\fhir-candle.dll"
     echo Placeholder files created for Lite mode build.
     echo.
 )
 
-REM === Modify docker-compose.yml to set APP_MODE ===
-echo Updating docker-compose.yml with APP_MODE=%APP_MODE%...
+REM === MODIFIED: Update docker-compose.yml to set APP_MODE and HAPI_FHIR_URL ===
+echo Updating docker-compose.yml with APP_MODE=%APP_MODE% and HAPI_FHIR_URL...
 (
   echo version: '3.8'
   echo services:
   echo   fhirflare:
   echo     build:
   echo       context: .
-  echo       dockerfile: Dockerfile
+  IF "%SERVER_TYPE%"=="hapi" (
+        echo       dockerfile: Dockerfile.hapi
+    ) ELSE IF "%SERVER_TYPE%"=="candle" (
+        echo       dockerfile: Dockerfile.candle
+    ) ELSE (
+        echo       dockerfile: Dockerfile.lite
+  )
   echo     ports:
-  echo       - "5000:5000"
-  echo       - "8080:8080" # Keep port exposed, even if Tomcat isn't running useful stuff in Lite
+  IF "%SERVER_TYPE%"=="candle" (
+    echo       - "5000:5000"
+    echo       - "5001:5826"
+  ) ELSE (
+    echo       - "5000:5000"
+    echo       - "8080:8080"
+  )
   echo     volumes:
   echo       - ./instance:/app/instance
   echo       - ./static/uploads:/app/static/uploads
-  echo       - ./instance/hapi-h2-data/:/app/h2-data # Keep volume mounts consistent
+  IF "%SERVER_TYPE%"=="hapi" (
+    echo       - ./instance/hapi-h2-data/:/app/h2-data # Keep volume mounts consistent
+  )
   echo       - ./logs:/app/logs
+  IF "%SERVER_TYPE%"=="hapi" (
+    echo       - ./hapi-fhir-jpaserver/target/ROOT.war:/usr/local/tomcat/webapps/ROOT.war
+    echo       - ./hapi-fhir-jpaserver/target/classes/application.yaml:/usr/local/tomcat/conf/application.yaml
+  ) ELSE IF "%SERVER_TYPE%"=="candle" (
+    echo       - ./fhir-candle/publish/:/app/fhir-candle-publish/
+  )
   echo     environment:
   echo       - FLASK_APP=app.py
   echo       - FLASK_ENV=development
   echo       - NODE_PATH=/usr/lib/node_modules
   echo       - APP_MODE=%APP_MODE%
   echo       - APP_BASE_URL=http://localhost:5000
-  echo       - HAPI_FHIR_URL=http://localhost:8080/fhir 
+  IF DEFINED CUSTOM_FHIR_URL_VAL (
+    echo       - HAPI_FHIR_URL=!CUSTOM_FHIR_URL_VAL!
+  ) ELSE (
+    IF "%SERVER_TYPE%"=="candle" (
+        echo       - HAPI_FHIR_URL=http://localhost:5826/fhir/%CANDLE_FHIR_VERSION%
+        echo       - ASPNETCORE_URLS=http://0.0.0.0:5826
+    ) ELSE (
+        echo       - HAPI_FHIR_URL=http://localhost:8080/fhir
+    )
+  )
   echo     command: supervisord -c /etc/supervisord.conf
 ) > docker-compose.yml.tmp
 
@@ -208,4 +375,4 @@ exit /b 1
 
 :eof
 echo Script execution finished.
-pause
+pause

Dockerfile

@@ -1,57 +1,73 @@
-# Base image with Python and Java
-FROM tomcat:10.1-jdk17
-
-# Install build dependencies, Node.js 18, and coreutils (for stdbuf)
-RUN apt-get update && apt-get install -y --no-install-recommends \
-    python3 python3-pip python3-venv curl coreutils \
-    && curl -fsSL https://deb.nodesource.com/setup_18.x | bash - \
-    && apt-get install -y --no-install-recommends nodejs \
-    && rm -rf /var/lib/apt/lists/*
-
-# Install specific versions of GoFSH and SUSHI
-# REMOVED pip install fhirpath from this line
-RUN npm install -g gofsh fsh-sushi
-
-# Set up Python environment
-WORKDIR /app
-RUN python3 -m venv /app/venv
-ENV PATH="/app/venv/bin:$PATH"
-
-# ADDED: Uninstall old fhirpath just in case it's in requirements.txt
-RUN pip uninstall -y fhirpath || true
-# ADDED: Install the new fhirpathpy library
-RUN pip install --no-cache-dir fhirpathpy
-
-# Copy Flask files
-COPY requirements.txt .
-# Install requirements (including Pydantic - check version compatibility if needed)
-RUN pip install --no-cache-dir -r requirements.txt
-COPY app.py .
-COPY services.py .
-COPY forms.py .
-COPY package.py .
-COPY templates/ templates/
-COPY static/ static/
-COPY tests/ tests/
-
-# Ensure /tmp, /app/h2-data, /app/static/uploads, and /app/logs are writable
-RUN mkdir -p /tmp /app/h2-data /app/static/uploads /app/logs && chmod 777 /tmp /app/h2-data /app/static/uploads /app/logs
-
-# Copy pre-built HAPI WAR and configuration
-COPY hapi-fhir-jpaserver/target/ROOT.war /usr/local/tomcat/webapps/
-COPY hapi-fhir-jpaserver/target/classes/application.yaml /usr/local/tomcat/conf/
-COPY hapi-fhir-jpaserver/target/classes/application.yaml /app/config/application.yaml
-COPY hapi-fhir-jpaserver/target/classes/application.yaml /usr/local/tomcat/webapps/app/config/application.yaml
-COPY hapi-fhir-jpaserver/custom/ /usr/local/tomcat/webapps/custom/
-
-# Install supervisord
-RUN pip install supervisor
-
-# Configure supervisord
-COPY supervisord.conf /etc/supervisord.conf
-
-# Expose ports
-EXPOSE 5000 8080
-
-# Start supervisord
-CMD ["supervisord", "-c", "/etc/supervisord.conf"]
+# Base image with Python and Java
+FROM tomcat:10.1-jdk17
+
+# Install build dependencies, Node.js 18, and coreutils (for stdbuf)
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    python3 python3-pip python3-venv curl coreutils git \
+    && curl -fsSL https://deb.nodesource.com/setup_18.x | bash - \
+    && apt-get install -y --no-install-recommends nodejs \
+    && rm -rf /var/lib/apt/lists/*
+
+# ADDED: Install the Dotnet SDK for the FHIR Candle server
+# This makes the image a universal base for either server type
+RUN apt-get update && apt-get install -y dotnet-sdk-6.0
+
+# Install specific versions of GoFSH and SUSHI
+RUN npm install -g gofsh fsh-sushi
+
+# ADDED: Download the latest HL7 FHIR Validator CLI
+RUN mkdir -p /app/validator_cli
+WORKDIR /app/validator_cli
+# Download the validator JAR and a separate checksum file for verification
+RUN curl -L -o validator_cli.jar "https://github.com/hapifhir/org.hl7.fhir.core/releases/latest/download/validator_cli.jar"
+
+# Set permissions for the downloaded file
+RUN chmod 755 validator_cli.jar
+
+# Change back to the main app directory for the next steps
+WORKDIR /app
+# Set up Python environment
+RUN python3 -m venv /app/venv
+ENV PATH="/app/venv/bin:$PATH"
+
+# ADDED: Uninstall old fhirpath just in case it's in requirements.txt
+RUN pip uninstall -y fhirpath || true
+# ADDED: Install the new fhirpathpy library
+RUN pip install --no-cache-dir fhirpathpy
+
+# Copy Flask files
+COPY requirements.txt .
+# Install requirements (including Pydantic - check version compatibility if needed)
+RUN pip install --no-cache-dir -r requirements.txt
+COPY app.py .
+COPY services.py .
+COPY forms.py .
+COPY package.py .
+COPY templates/ templates/
+COPY static/ static/
+COPY tests/ tests/
+
+# Ensure /tmp, /app/h2-data, /app/static/uploads, and /app/logs are writable
+RUN mkdir -p /tmp /app/h2-data /app/static/uploads /app/logs && chmod 777 /tmp /app/h2-data /app/static/uploads /app/logs
+
+# Copy pre-built HAPI WAR and configuration
+COPY hapi-fhir-jpaserver/target/ROOT.war /usr/local/tomcat/webapps/
+COPY hapi-fhir-jpaserver/target/classes/application.yaml /usr/local/tomcat/conf/
+COPY hapi-fhir-jpaserver/target/classes/application.yaml /app/config/application.yaml
+COPY hapi-fhir-jpaserver/target/classes/application.yaml /usr/local/tomcat/webapps/app/config/application.yaml
+COPY hapi-fhir-jpaserver/custom/ /usr/local/tomcat/webapps/custom/
+
+# ADDED: Copy pre-built Candle DLL files
+COPY fhir-candle/publish/ /app/fhir-candle-publish/
+
+# Install supervisord
+RUN pip install supervisor
+
+# Configure supervisord
+COPY supervisord.conf /etc/supervisord.conf
+
+# Expose ports
+EXPOSE 5000 8080 5001
+
+# Start supervisord
+CMD ["supervisord", "-c", "/etc/supervisord.conf"]

Dockerfile.candle

@@ -0,0 +1,64 @@
+# Base image with Python and Dotnet
+FROM mcr.microsoft.com/dotnet/sdk:9.0
+
+# Install build dependencies, Node.js 18, and coreutils (for stdbuf)
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    python3 python3-pip python3-venv \
+    default-jre-headless \
+    curl coreutils git \
+    && curl -fsSL https://deb.nodesource.com/setup_18.x | bash - \
+    && apt-get install -y --no-install-recommends nodejs \
+    && rm -rf /var/lib/apt/lists/*
+
+# Install specific versions of GoFSH and SUSHI
+RUN npm install -g gofsh fsh-sushi
+
+# ADDED: Download the latest HL7 FHIR Validator CLI
+RUN mkdir -p /app/validator_cli
+WORKDIR /app/validator_cli
+# Download the validator JAR and a separate checksum file for verification
+RUN curl -L -o validator_cli.jar "https://github.com/hapifhir/org.hl7.fhir.core/releases/latest/download/validator_cli.jar"
+
+# Set permissions for the downloaded file
+RUN chmod 755 validator_cli.jar
+
+# Change back to the main app directory for the next steps
+WORKDIR /app
+# Set up Python environment
+RUN python3 -m venv /app/venv
+ENV PATH="/app/venv/bin:$PATH"
+
+# ADDED: Uninstall old fhirpath just in case it's in requirements.txt
+RUN pip uninstall -y fhirpath || true
+# ADDED: Install the new fhirpathpy library
+RUN pip install --no-cache-dir fhirpathpy
+
+# Copy Flask files
+COPY requirements.txt .
+# Install requirements (including Pydantic - check version compatibility if needed)
+RUN pip install --no-cache-dir -r requirements.txt
+COPY app.py .
+COPY services.py .
+COPY forms.py .
+COPY package.py .
+COPY templates/ templates/
+COPY static/ static/
+COPY tests/ tests/
+
+# Ensure /tmp, /app/h2-data, /app/static/uploads, and /app/logs are writable
+RUN mkdir -p /tmp /app/h2-data /app/static/uploads /app/logs && chmod 777 /tmp /app/h2-data /app/static/uploads /app/logs
+
+# Copy pre-built Candle DLL files
+COPY fhir-candle/publish/ /app/fhir-candle-publish/
+
+# Install supervisord
+RUN pip install supervisor
+
+# Configure supervisord
+COPY supervisord.conf /etc/supervisord.conf
+
+# Expose ports
+EXPOSE 5000 5001
+
+# Start supervisord
+CMD ["supervisord", "-c", "/etc/supervisord.conf"]

Dockerfile.hapi

@@ -0,0 +1,66 @@
+# Base image with Python, Java, and Maven
+FROM tomcat:10.1-jdk17
+
+# Install build dependencies, Node.js 18, and coreutils (for stdbuf)
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    python3 python3-pip python3-venv curl coreutils git maven \
+    && curl -fsSL https://deb.nodesource.com/setup_18.x | bash - \
+    && apt-get install -y --no-install-recommends nodejs \
+    && rm -rf /var/lib/apt/lists/*
+
+# Install specific versions of GoFSH and SUSHI
+RUN npm install -g gofsh fsh-sushi
+
+# ADDED: Download the latest HL7 FHIR Validator CLI
+RUN mkdir -p /app/validator_cli
+WORKDIR /app/validator_cli
+# Download the validator JAR and a separate checksum file for verification
+RUN curl -L -o validator_cli.jar "https://github.com/hapifhir/org.hl7.fhir.core/releases/latest/download/validator_cli.jar"
+
+# Set permissions for the downloaded file
+RUN chmod 755 validator_cli.jar
+
+# Change back to the main app directory for the next steps
+WORKDIR /app
+# Set up Python environment
+RUN python3 -m venv /app/venv
+ENV PATH="/app/venv/bin:$PATH"
+
+# ADDED: Uninstall old fhirpath just in case it's in requirements.txt
+RUN pip uninstall -y fhirpath || true
+# ADDED: Install the new fhirpathpy library
+RUN pip install --no-cache-dir fhirpathpy
+
+# Copy Flask files
+COPY requirements.txt .
+# Install requirements (including Pydantic - check version compatibility if needed)
+RUN pip install --no-cache-dir -r requirements.txt
+COPY app.py .
+COPY services.py .
+COPY forms.py .
+COPY package.py .
+COPY templates/ templates/
+COPY static/ static/
+COPY tests/ tests/
+
+# Ensure /tmp, /app/h2-data, /app/static/uploads, and /app/logs are writable
+RUN mkdir -p /tmp /app/h2-data /app/static/uploads /app/logs && chmod 777 /tmp /app/h2-data /app/static/uploads /app/logs
+
+# Copy pre-built HAPI WAR and configuration
+COPY hapi-fhir-jpaserver/target/ROOT.war /usr/local/tomcat/webapps/
+COPY hapi-fhir-jpaserver/target/classes/application.yaml /usr/local/tomcat/conf/
+COPY hapi-fhir-jpaserver/target/classes/application.yaml /app/config/application.yaml
+COPY hapi-fhir-jpaserver/target/classes/application.yaml /usr/local/tomcat/webapps/app/config/application.yaml
+COPY hapi-fhir-jpaserver/custom/ /usr/local/tomcat/webapps/custom/
+
+# Install supervisord
+RUN pip install supervisor
+
+# Configure supervisord
+COPY supervisord.conf /etc/supervisord.conf
+
+# Expose ports
+EXPOSE 5000 8080
+
+# Start supervisord
+CMD ["supervisord", "-c", "/etc/supervisord.conf"]

Dockerfile.lite

@@ -0,0 +1,60 @@
+# Base image with Python and Node.js
+FROM python:3.9-slim
+
+# Install JRE and other dependencies for the validator
+# We need to install `default-jre-headless` to get a minimal Java Runtime Environment
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    default-jre-headless \
+    curl coreutils git \
+    && curl -fsSL https://deb.nodesource.com/setup_18.x | bash - \
+    && apt-get install -y --no-install-recommends nodejs \
+    && rm -rf /var/lib/apt/lists/*
+
+# Install specific versions of GoFSH and SUSHI
+RUN npm install -g gofsh fsh-sushi
+
+# ADDED: Download the latest HL7 FHIR Validator CLI
+RUN mkdir -p /app/validator_cli
+WORKDIR /app/validator_cli
+# Download the validator JAR and a separate checksum file for verification
+RUN curl -L -o validator_cli.jar "https://github.com/hapifhir/org.hl7.fhir.core/releases/latest/download/validator_cli.jar"
+
+# Set permissions for the downloaded file
+RUN chmod 755 validator_cli.jar
+
+# Change back to the main app directory for the next steps
+WORKDIR /app
+# Set up Python environment
+RUN python3 -m venv /app/venv
+ENV PATH="/app/venv/bin:$PATH"
+
+# ADDED: Uninstall old fhirpath just in case it's in requirements.txt
+RUN pip uninstall -y fhirpath || true
+# ADDED: Install the new fhirpathpy library
+RUN pip install --no-cache-dir fhirpathpy
+
+# Copy Flask files
+COPY requirements.txt .
+RUN pip install --no-cache-dir -r requirements.txt
+COPY app.py .
+COPY services.py .
+COPY forms.py .
+COPY package.py .
+COPY templates/ templates/
+COPY static/ static/
+COPY tests/ tests/
+
+# Ensure necessary directories are writable
+RUN mkdir -p /app/static/uploads /app/logs && chmod 777 /app/static/uploads /app/logs
+
+# Install supervisord
+RUN pip install supervisor
+
+# Configure supervisord
+COPY supervisord.conf /etc/supervisord.conf
+
+# Expose ports
+EXPOSE 5000
+
+# Start supervisord
+CMD ["supervisord", "-c", "/etc/supervisord.conf"]

README.md

@@ -5,22 +5,65 @@
 
 The FHIRFLARE IG Toolkit is a Flask-based web application designed to streamline the management, processing, validation, and deployment of FHIR Implementation Guides (IGs) and test data. It offers a user-friendly interface for importing IG packages, extracting metadata, validating FHIR resources or bundles, pushing IGs to FHIR servers, converting FHIR resources to FHIR Shorthand (FSH), uploading complex test data sets with dependency management, and retrieving/splitting FHIR bundles. The toolkit includes live consoles for real-time feedback, making it an essential tool for FHIR developers and implementers.
 
-The application can run in two modes:
+The application can run in four modes:
 
-* **Standalone:** Includes a Dockerized Flask frontend, SQLite database, and an embedded HAPI FHIR server for local validation and interaction.
-* **Lite:** Includes only the Dockerized Flask frontend and SQLite database, excluding the local HAPI FHIR server. Requires connection to external FHIR servers for certain features.
+
+* Installation Modes (Lite, Custom URL, Hapi, and Candle)
+    This toolkit now offers four primary installation modes, configured via a simple command-line prompt during setup:
+
+    Lite Mode
+
+    Includes the Flask frontend, SQLite database, and core tooling (GoFSH, SUSHI) without an embedded FHIR server.
+
+    Requires you to provide a URL for an external FHIR server when using features like the FHIR API Explorer and validation.
+
+    Does not require Git, Maven, or .NET for setup.
+
+    Ideal for users who will always connect to an existing external FHIR server.
+
+    Custom URL Mode
+
+    Similar to Lite Mode, but prompts you for a specific external FHIR server URL to use as the default for the toolkit.
+
+    The application will be pre-configured to use your custom URL for all FHIR-related operations.
+
+    Does not require Git, Maven, or .NET for setup.
+
+    Hapi Mode
+
+    Includes the full FHIRFLARE toolkit and an embedded HAPI FHIR server.
+
+    The docker-compose configuration will proxy requests to the internal HAPI server, which is accessible via http://localhost:8080/fhir.
+
+    Requires Git and Maven during the initial build process to compile the HAPI FHIR server.
+
+    Ideal for users who want a self-contained, offline development and testing environment.
+
+    Candle Mode
+
+    Includes the full FHIRFLARE toolkit and an embedded FHIR Candle server.
+
+    The docker-compose configuration will proxy requests to the internal Candle server, which is accessible via http://localhost:5001/fhir/<version>.
+
+    Requires Git and the .NET SDK during the initial build process.
+
+    Ideal for users who want to use the .NET-based FHIR server for development and testing.
 
 ## Installation Modes (Lite vs. Standalone)
 
 This toolkit offers two primary installation modes to suit different needs:
 
-* **Standalone Version:**
+* **Standalone Version - Hapi / Candle:**
     * Includes the full FHIRFLARE Toolkit application **and** an embedded HAPI FHIR server running locally within the Docker environment.
     * Allows for local FHIR resource validation using HAPI FHIR's capabilities.
     * Enables the "Use Local HAPI" option in the FHIR API Explorer and FHIR UI Operations pages, proxying requests to the internal HAPI server (`http://localhost:8080/fhir`).
     * Requires Git and Maven during the initial build process (via the `.bat` script or manual steps) to prepare the HAPI FHIR server.
     * Ideal for users who want a self-contained environment for development and testing or who don't have readily available external FHIR servers.
 
+* **Standalone Version - Custom Mode:**
+    * Includes the full FHIRFLARE Toolkit application **and** point the Environmet variable at your chosen custom fhir url endpoint allowing for Custom setups
+    
+
 * **Lite Version:**
     * Includes the FHIRFLARE Toolkit application **without** the embedded HAPI FHIR server.
     * Requires users to provide URLs for external FHIR servers when using features like the FHIR API Explorer and FHIR UI Operations pages. The "Use Local HAPI" option will be disabled in the UI.

app.py

@@ -1,6 +1,11 @@
 import sys
 import os
-sys.path.append(os.path.abspath(os.path.dirname(__file__)))
+# Make paths relative to the current directory instead of absolute '/app' paths
+CURRENT_DIR = os.path.abspath(os.path.dirname(__file__))
+# Introduce app_dir variable that can be overridden by environment
+app_dir = os.environ.get('APP_DIR', CURRENT_DIR)
+sys.path.append(CURRENT_DIR)
+#sys.path.append(os.path.abspath(os.path.dirname(__file__)))
 import datetime
 import shutil
 import queue
@@ -24,6 +29,7 @@ import re
 import yaml
 import threading
 import time # Add time import
+import io
 import services
 from services import (
     services_bp,
@@ -39,9 +45,14 @@ from services import (
     pkg_version,
     get_package_description,
     safe_parse_version,
-    import_manual_package_and_dependencies
+    import_manual_package_and_dependencies,
+    parse_and_list_igs, 
+    generate_ig_yaml,
+    apply_and_validate,
+    run_validator_cli,
+    uuid
 )
-from forms import IgImportForm, ManualIgImportForm, ValidationForm, FSHConverterForm, TestDataUploadForm, RetrieveSplitDataForm
+from forms import IgImportForm, ManualIgImportForm, ValidationForm, FSHConverterForm, TestDataUploadForm, RetrieveSplitDataForm, IgYamlForm
 from wtforms import SubmitField
 from package import package_bp
 from flasgger import Swagger, swag_from # Import Flasgger
@@ -52,16 +63,24 @@ from logging.handlers import RotatingFileHandler
 #app setup
 app = Flask(__name__)
 app.config['SECRET_KEY'] = os.environ.get('SECRET_KEY', 'your-fallback-secret-key-here')
-app.config['SQLALCHEMY_DATABASE_URI'] = os.environ.get('DATABASE_URL', 'sqlite:////app/instance/fhir_ig.db')
+
+# Update paths to be relative to current directory
+instance_path = os.path.join(CURRENT_DIR, 'instance')
+app.config['SQLALCHEMY_DATABASE_URI'] = os.environ.get('DATABASE_URL', f'sqlite:///{os.path.join(instance_path, "fhir_ig.db")}')
 app.config['SQLALCHEMY_TRACK_MODIFICATIONS'] = False
-app.config['FHIR_PACKAGES_DIR'] = '/app/instance/fhir_packages'
+app.config['FHIR_PACKAGES_DIR'] = os.path.join(instance_path, 'fhir_packages')
 app.config['API_KEY'] = os.environ.get('API_KEY', 'your-fallback-api-key-here')
 app.config['VALIDATE_IMPOSED_PROFILES'] = True
 app.config['DISPLAY_PROFILE_RELATIONSHIPS'] = True
-app.config['UPLOAD_FOLDER'] = '/app/static/uploads'  # For GoFSH output
+app.config['LATEST_BUILD_URL'] = "http://build.fhir.org/ig/qas.json"
+app.config['VALIDATION_LOG_DIR'] = os.path.join(app.instance_path, 'validation_logs')
+os.makedirs(app.config['VALIDATION_LOG_DIR'], exist_ok=True)
+app.config['UPLOAD_FOLDER'] = os.path.join(CURRENT_DIR, 'static', 'uploads')  # For GoFSH output
 app.config['APP_BASE_URL'] = os.environ.get('APP_BASE_URL', 'http://localhost:5000')
 app.config['HAPI_FHIR_URL'] = os.environ.get('HAPI_FHIR_URL', 'http://localhost:8080/fhir')
-CONFIG_PATH = '/usr/local/tomcat/conf/application.yaml'
+CONFIG_PATH = os.environ.get('CONFIG_PATH', '/usr/local/tomcat/conf/application.yaml')
+
+
 
 # Basic Swagger configuration
 app.config['SWAGGER'] = {
@@ -228,6 +247,11 @@ db = SQLAlchemy(app)
 csrf = CSRFProtect(app)
 migrate = Migrate(app, db)
 
+# Add a global application state dictionary for sharing state between threads
+app_state = {
+    'fetch_failed': False
+}
+
 # @app.route('/clear-cache')
 # def clear_cache():
 #     """Clears the in-memory package cache, the DB timestamp, and the CachedPackage table."""
@@ -519,6 +543,29 @@ def restart_tomcat():
 def config_hapi():
     return render_template('config_hapi.html', site_name='FHIRFLARE IG Toolkit', now=datetime.datetime.now())
 
+@app.route('/api/get-local-server-url', methods=['GET'])
+@swag_from({
+    'tags': ['FHIR Server Configuration'],
+    'summary': 'Get the local FHIR server URL.',
+    'description': 'Retrieves the base URL of the configured local FHIR server (HAPI). This is used by frontend components to make direct requests, bypassing the proxy.',
+    'responses': {
+        '200': {
+            'description': 'The URL of the local FHIR server.',
+            'schema': {
+                'type': 'object',
+                'properties': {
+                    'url': {'type': 'string', 'example': 'http://localhost:8080/fhir'}
+                }
+            }
+        }
+    }
+})
+def get_local_server_url():
+    """
+    Expose the local HAPI FHIR server URL to the frontend.
+    """
+    return jsonify({'url': app.config.get('HAPI_FHIR_URL', 'http://localhost:8080/fhir')})
+
 @app.route('/manual-import-ig', methods=['GET', 'POST'])
 def manual_import_ig():
     """
@@ -695,7 +742,7 @@ def perform_cache_refresh_and_log():
             now_ts = datetime.datetime.now(datetime.timezone.utc)
             app.config['MANUAL_PACKAGE_CACHE'] = normalized_packages
             app.config['MANUAL_CACHE_TIMESTAMP'] = now_ts
-            session['fetch_failed'] = fetch_failed # Update session flag reflecting fetch outcome
+            app_state['fetch_failed'] = fetch_failed # Update app_state instead of session
             logger.info(f"Updated in-memory cache with {len(normalized_packages)} packages. Fetch failed: {fetch_failed}")
 
             # 6. Cache in Database (if successful fetch)
@@ -1725,6 +1772,157 @@ csrf.exempt(api_push_ig)   # Add this line
 # Exempt the entire API blueprint (for routes defined IN services.py, like /api/validate-sample)
 csrf.exempt(services_bp) # Keep this line for routes defined in the blueprint
 
+@app.route('/validate-sample', methods=['GET'])
+def validate_resource_page():
+    """Renders the validation form page."""
+    form = ValidationForm()
+    # Fetch list of packages to populate the dropdown
+    packages = current_app.config.get('MANUAL_PACKAGE_CACHE', [])
+    return render_template('validate_sample.html', form=form, packages=packages)
+
+@app.route('/api/validate', methods=['POST'])
+@swag_from({
+    'tags': ['Validation'],
+    'summary': 'Starts a validation process for a FHIR resource or bundle.',
+    'description': 'Starts a validation task and immediately returns a task ID for polling. The actual validation is run in a separate thread to prevent timeouts.',
+    'security': [{'ApiKeyAuth': []}],
+    'consumes': ['application/json'],
+    'parameters': [
+        {
+            'name': 'validation_payload',
+            'in': 'body',
+            'required': True,
+            'schema': {
+                'type': 'object',
+                'required': ['package_name', 'version', 'fhir_resource'],
+                'properties': {
+                    'package_name': {'type': 'string', 'example': 'hl7.fhir.us.core'},
+                    'version': {'type': 'string', 'example': '6.1.0'},
+                    'fhir_resource': {'type': 'string', 'description': 'A JSON string of the FHIR resource or Bundle to validate.'},
+                    'fhir_version': {'type': 'string', 'example': '4.0.1'},
+                    'do_native': {'type': 'boolean', 'default': False},
+                    'hint_about_must_support': {'type': 'boolean', 'default': False},
+                    'assume_valid_rest_references': {'type': 'boolean', 'default': False},
+                    'no_extensible_binding_warnings': {'type': 'boolean', 'default': False},
+                    'show_times': {'type': 'boolean', 'default': False},
+                    'allow_example_urls': {'type': 'boolean', 'default': False},
+                    'check_ips_codes': {'type': 'boolean', 'default': False},
+                    'allow_any_extensions': {'type': 'boolean', 'default': False},
+                    'tx_routing': {'type': 'boolean', 'default': False},
+                    'snomed_ct_version': {'type': 'string', 'default': ''},
+                    'profiles': {'type': 'string', 'description': 'Comma-separated list of profile URLs.'},
+                    'extensions': {'type': 'string', 'description': 'Comma-separated list of extension URLs.'},
+                    'terminology_server': {'type': 'string', 'description': 'URL of an alternate terminology server.'}
+                }
+            }
+        }
+    ],
+    'responses': {
+        '202': {'description': 'Validation process started successfully, returns a task_id.'},
+        '400': {'description': 'Invalid request (e.g., missing fields, invalid JSON).'}
+    }
+})
+def validate_resource():
+    """API endpoint to run validation on a FHIR resource."""
+    try:
+        # Get data from the JSON payload
+        data = request.get_json()
+        if not data:
+            return jsonify({'status': 'error', 'message': 'Invalid JSON: No data received.'}), 400
+            
+        fhir_resource_text = data.get('fhir_resource')
+        fhir_version = data.get('fhir_version')
+        package_name = data.get('package_name')
+        version = data.get('version')
+        profiles = data.get('profiles')
+        extensions = data.get('extensions')
+        terminology_server = data.get('terminology_server')
+        snomed_ct_version = data.get('snomed_ct_version')
+        
+        # Build the list of IGs from the package name and version
+        igs = [f"{package_name}#{version}"] if package_name and version else []
+        
+        flags = {
+            'doNative': data.get('do_native'),
+            'hintAboutMustSupport': data.get('hint_about_must_support'),
+            'assumeValidRestReferences': data.get('assume_valid_rest_references'),
+            'noExtensibleBindingWarnings': data.get('no_extensible_binding_warnings'),
+            'showTimes': data.get('show_times'),
+            'allowExampleUrls': data.get('allow_example_urls'),
+            'checkIpsCodes': data.get('check_ips_codes'),
+            'allowAnyExtensions': data.get('allow_any_extensions'),
+            'txRouting': data.get('tx_routing'),
+        }
+
+        # Check for empty resource
+        if not fhir_resource_text:
+            return jsonify({'status': 'error', 'message': 'No FHIR resource provided.'}), 400
+        
+        try:
+            # Generate a unique task ID
+            task_id = str(uuid.uuid4())
+            
+            # Store a pending status in the global cache
+            with services.cache_lock:
+                services.validation_results_cache[task_id] = {"status": "pending"}
+            
+            # Start the validation process in a new thread
+            app_context = app.app_context()
+            thread = threading.Thread(
+                target=services.validate_in_thread,
+                args=(app_context, task_id, fhir_resource_text, fhir_version, igs, profiles, extensions, terminology_server, flags, snomed_ct_version),
+                daemon=True
+            )
+            thread.start()
+            
+            logger.info(f"Validation task {task_id} started in background thread.")
+            
+            return jsonify({"status": "accepted", "message": "Validation started", "task_id": task_id}), 202
+
+        except Exception as e:
+            logger.error(f"Error starting validation thread: {e}", exc_info=True)
+            return jsonify({'status': 'error', 'message': f'An internal server error occurred while starting the validation: {e}'}), 500
+
+    except Exception as e:
+        logger.error(f"Validation API error: {e}")
+        return jsonify({'status': 'error', 'message': f'An internal server error occurred: {e}'}), 500
+
+@app.route('/api/check-validation-status/<task_id>', methods=['GET'])
+@swag_from({
+    'tags': ['Validation'],
+    'summary': 'Check the status of a validation task.',
+    'description': 'Polls for the result of a validation task by its ID. Returns the full validation report when the task is complete.',
+    'security': [{'ApiKeyAuth': []}],
+    'parameters': [
+        {'name': 'task_id', 'in': 'path', 'type': 'string', 'required': True, 'description': 'The unique ID of the validation task.'}
+    ],
+    'responses': {
+        '200': {'description': 'Returns the full validation report if the task is complete.'},
+        '202': {'description': 'The validation task is still in progress.'},
+        '404': {'description': 'The specified task ID was not found.'}
+    }
+})
+def check_validation_status(task_id):
+    """
+    This GET endpoint is polled by the frontend to check the status of a validation task.
+    """
+    with services.cache_lock:
+        task_result = services.validation_results_cache.get(task_id)
+
+    if task_result is None:
+        return jsonify({"status": "error", "message": "Task not found."}), 404
+        
+    if task_result["status"] == "pending":
+        return jsonify({"status": "pending", "message": "Validation is still in progress."}), 202
+
+    # Remove the result from the cache after it has been retrieved to prevent a memory leak
+    with services.cache_lock:
+        del services.validation_results_cache[task_id]
+
+    return jsonify({"status": "complete", "result": task_result["result"]}), 200
+
+
+
 def create_db():
     logger.debug(f"Attempting to create database tables for URI: {app.config['SQLALCHEMY_DATABASE_URI']}")
     try:
@@ -1778,25 +1976,39 @@ def proxy_hapi(subpath):
     logger.debug(f"Proxy received request for path: '/fhir/{subpath}', cleaned subpath: '{clean_subpath}'")
 
     # Determine the target FHIR server base URL
+    # NEW: Check for proxy-target query parameter first
+    target_server_query = request.args.get('proxy-target')
     target_server_header = request.headers.get('X-Target-FHIR-Server')
     final_base_url = None
     is_custom_target = False
 
-    if target_server_header:
+    if target_server_query:
         try:
-             parsed_url = urlparse(target_server_header)
-             if not parsed_url.scheme or not parsed_url.netloc:
-                  raise ValueError("Invalid URL format in X-Target-FHIR-Server header")
-             final_base_url = target_server_header.rstrip('/')
-             is_custom_target = True
-             logger.info(f"Proxy target identified from header: {final_base_url}")
+            parsed_url = urlparse(target_server_query)
+            if not parsed_url.scheme or not parsed_url.netloc:
+                raise ValueError("Invalid URL format in proxy-target query parameter")
+            final_base_url = target_server_query.rstrip('/')
+            is_custom_target = True
+            logger.info(f"Proxy target identified from query parameter: {final_base_url}")
         except ValueError as e:
-             logger.warning(f"Invalid URL in X-Target-FHIR-Server header: '{target_server_header}'. Falling back. Error: {e}")
-             final_base_url = current_app.config['HAPI_FHIR_URL'].rstrip('/')
-             logger.debug(f"Falling back to default local HAPI due to invalid header: {final_base_url}")
+            logger.warning(f"Invalid URL in proxy-target query parameter: '{target_server_query}'. Falling back. Error: {e}")
+            final_base_url = current_app.config['HAPI_FHIR_URL'].rstrip('/')
+            logger.debug(f"Falling back to default local HAPI due to invalid query: {final_base_url}")
+    elif target_server_header:
+        try:
+            parsed_url = urlparse(target_server_header)
+            if not parsed_url.scheme or not parsed_url.netloc:
+                raise ValueError("Invalid URL format in X-Target-FHIR-Server header")
+            final_base_url = target_server_header.rstrip('/')
+            is_custom_target = True
+            logger.info(f"Proxy target identified from header: {final_base_url}")
+        except ValueError as e:
+            logger.warning(f"Invalid URL in X-Target-FHIR-Server header: '{target_server_header}'. Falling back. Error: {e}")
+            final_base_url = current_app.config['HAPI_FHIR_URL'].rstrip('/')
+            logger.debug(f"Falling back to default local HAPI due to invalid header: {final_base_url}")
     else:
         final_base_url = current_app.config['HAPI_FHIR_URL'].rstrip('/')
-        logger.debug(f"No target header found, proxying to default local HAPI: {final_base_url}")
+        logger.debug(f"No target info found, proxying to default local HAPI: {final_base_url}")
 
     # Construct the final URL for the target server request
     # Append the cleaned subpath only if it's not empty
@@ -1879,7 +2091,47 @@ def proxy_hapi(subpath):
          logger.error(f"Unexpected proxy error for {final_url}: {str(e)}", exc_info=True)
          return jsonify({'resourceType': 'OperationOutcome', 'issue': [{'severity': 'error', 'code': 'exception', 'diagnostics': 'An unexpected error occurred within the FHIR proxy.', 'details': {'text': str(e)}}]}), 500
 
-# --- End of corrected proxy_hapi function ---
+
+@app.route('/api/stream-retrieve', methods=['GET'])
+def stream_retrieve_bundles():
+    """
+    Handles streaming FHIR bundle retrieval. This endpoint directly calls the service function,
+    bypassing the proxy to avoid conflicts. It receives the target URL,
+    resources, and other parameters from the front-end via URL query parameters.
+    """
+    def generate_stream():
+        with app.app_context():
+            # Extract parameters from query string
+            fhir_server_url = request.args.get('fhir_server_url')
+            resources = request.args.getlist('resources')
+            validate_references = request.args.get('validate_references', 'false').lower() == 'true'
+            fetch_reference_bundles = request.args.get('fetch_reference_bundles', 'false').lower() == 'true'
+            
+            # Extract authentication headers
+            auth_token = request.headers.get('Authorization')
+            auth_type = 'bearer' if auth_token and auth_token.lower().startswith('bearer') else 'basic' if auth_token and auth_token.lower().startswith('basic') else 'none'
+
+            temp_dir = tempfile.gettempdir()
+            zip_filename = f"retrieved_bundles_{datetime.datetime.now().strftime('%Y%m%d%H%M%S')}.zip"
+            output_zip = os.path.join(temp_dir, zip_filename)
+
+            try:
+                yield from services.retrieve_bundles(
+                    fhir_server_url=fhir_server_url,
+                    resources=resources,
+                    output_zip=output_zip,
+                    validate_references=validate_references,
+                    fetch_reference_bundles=fetch_reference_bundles,
+                    auth_type=auth_type,
+                    auth_token=auth_token
+                )
+            except Exception as e:
+                logger.error(f"Error in retrieve_bundles: {e}", exc_info=True)
+                yield json.dumps({"type": "error", "message": f"Unexpected error: {str(e)}"}) + "\n"
+
+    response = Response(generate_stream(), mimetype='application/x-ndjson')
+    response.headers['X-Zip-Path'] = os.path.join('/tmp', zip_filename)
+    return response
 
 
 @app.route('/api/load-ig-to-hapi', methods=['POST'])
@@ -2194,7 +2446,7 @@ def api_upload_test_data():
         if auth_type not in ['none', 'bearerToken', 'basic']:
             return jsonify({"status": "error", "message": "Invalid Authentication Type."}), 400
         if auth_type == 'bearerToken' and not auth_token:
-            return jsonify({"status": "error", "message": "Bearer Token required."}), 400
+            return jsonify({"status": "error", "message": "auth_token required for bearerToken."}), 400
         if auth_type == 'basic' and (not username or not password):
             return jsonify({"status": "error", "message": "Username and Password required for Basic Authentication."}), 400
         if upload_mode not in ['individual', 'transaction']:
@@ -2238,7 +2490,7 @@ def api_upload_test_data():
 
         # --- Prepare Server Info and Options ---
         server_info = {'url': fhir_server_url, 'auth_type': auth_type}
-        if auth_type == 'bearerToken':
+        if auth_type == 'bearer':
             server_info['auth_token'] = auth_token
         elif auth_type == 'basic':
             credentials = f"{username}:{password}"
@@ -2390,19 +2642,21 @@ def api_retrieve_bundles():
     output_zip = os.path.join(temp_dir, zip_filename)
 
     def generate():
-        try:
-            yield from services.retrieve_bundles(
-                fhir_server_url=fhir_server_url,
-                resources=resources,
-                output_zip=output_zip,
-                validate_references=validate_references,
-                fetch_reference_bundles=fetch_reference_bundles,
-                auth_type=auth_type,
-                auth_token=auth_token
-            )
-        except Exception as e:
-            logger.error(f"Error in retrieve_bundles: {e}", exc_info=True)
-            yield json.dumps({"type": "error", "message": f"Unexpected error: {str(e)}"}) + "\n"
+        # Push the application context manually for the generator's lifetime
+        with app.app_context():
+            try:
+                yield from services.retrieve_bundles(
+                    fhir_server_url=fhir_server_url,
+                    resources=resources,
+                    output_zip=output_zip,
+                    validate_references=validate_references,
+                    fetch_reference_bundles=fetch_reference_bundles,
+                    auth_type=auth_type,
+                    auth_token=auth_token
+                )
+            except Exception as e:
+                logger.error(f"Error in retrieve_bundles: {e}", exc_info=True)
+                yield json.dumps({"type": "error", "message": f"Unexpected error: {str(e)}"}) + "\n"
 
     response = Response(generate(), mimetype='application/x-ndjson')
     response.headers['X-Zip-Path'] = os.path.join('/tmp', zip_filename)
@@ -2658,7 +2912,7 @@ def search_and_import():
             raw_packages = fetch_packages_from_registries(search_term='')
             logger.debug(f"fetch_packages_from_registries returned {len(raw_packages)} raw packages.")
             if not raw_packages:
-                logger.warning("fetch_packages_from_registries returned no packages. Handling fallback or empty list.")
+                logger.warning("No packages returned from registries during refresh.")
                 normalized_packages = []
                 fetch_failed_flag = True
                 session['fetch_failed'] = True
@@ -2672,6 +2926,7 @@ def search_and_import():
                 now_ts = datetime.datetime.now(datetime.timezone.utc)
                 app.config['MANUAL_PACKAGE_CACHE'] = normalized_packages
                 app.config['MANUAL_CACHE_TIMESTAMP'] = now_ts
+                app_state['fetch_failed'] = False
                 logger.info(f"Stored {len(normalized_packages)} packages in manual cache (memory).")
 
                 # Save to CachedPackage table
@@ -2881,10 +3136,18 @@ def safe_parse_version_local(v_str): # Use different name
                 elif suffix in ['draft', 'ballot', 'preview']: return pkg_version_local.parse(f"{base_part}b0")
                 elif suffix and suffix.startswith('rc'): return pkg_version_local.parse(f"{base_part}rc{ ''.join(filter(str.isdigit, suffix)) or '0'}")
                 return pkg_version_local.parse(base_part)
-            except pkg_version_local.InvalidVersion: logger_details.warning(f"[DetailsView] Invalid base version '{base_part}' after splitting '{original_v_str}'. Treating as alpha."); return pkg_version_local.parse("0.0.0a0")
-            except Exception as e: logger_details.error(f"[DetailsView] Unexpected error parsing FHIR-suffixed version '{original_v_str}': {e}"); return pkg_version_local.parse("0.0.0a0")
-        else: logger_details.warning(f"[DetailsView] Unparseable version '{original_v_str}' (base '{base_part}' not standard). Treating as alpha."); return pkg_version_local.parse("0.0.0a0")
-    except Exception as e: logger_details.error(f"[DetailsView] Unexpected error in safe_parse_version_local for '{v_str}': {e}"); return pkg_version_local.parse("0.0.0a0")
+            except pkg_version_local.InvalidVersion: 
+                logger_details.warning(f"[DetailsView] Invalid base version '{base_part}' after splitting '{original_v_str}'. Treating as alpha.")
+                return pkg_version_local.parse("0.0.0a0")
+            except Exception as e: 
+                logger_details.error(f"[DetailsView] Unexpected error parsing FHIR-suffixed version '{original_v_str}': {e}")
+                return pkg_version_local.parse("0.0.0a0")
+        else: 
+            logger_details.warning(f"[DetailsView] Unparseable version '{original_v_str}' (base '{base_part}' not standard). Treating as alpha.")
+            return pkg_version_local.parse("0.0.0a0")
+    except Exception as e: 
+        logger_details.error(f"[DetailsView] Unexpected error in safe_parse_version_local for '{v_str}': {e}")
+        return pkg_version_local.parse("0.0.0a0")
 # --- End Local Helper Definition ---
 
 @app.route('/package-details/<name>')
@@ -3055,7 +3318,74 @@ def package_details_view(name):
                            package_name=actual_package_name,
                            latest_official_version=latest_official_version_str)
 
+@app.route('/ig-configurator', methods=['GET', 'POST'])
+def ig_configurator():
+    form = IgYamlForm()
+    packages_dir = current_app.config['FHIR_PACKAGES_DIR']
+    loaded_igs = services.parse_and_list_igs(packages_dir)
+    
+    form.igs.choices = [(name, f"{name} ({info['version']})") for name, info in loaded_igs.items()]
+    
+    yaml_output = None
+    
+    if form.validate_on_submit():
+        selected_ig_names = form.igs.data
+        
+        try:
+            yaml_output = generate_ig_yaml(selected_ig_names, loaded_igs)
+            flash("YAML configuration generated successfully!", "success")
+        except Exception as e:
+            flash(f"Error generating YAML: {str(e)}", "error")
+            logger.error(f"Error generating YAML: {str(e)}", exc_info=True)
 
+    return render_template('ig_configurator.html', form=form, yaml_output=yaml_output)
+
+@app.route('/download/<path:filename>')
+def download_file(filename):
+    """
+    Serves a file from the temporary directory created during validation.
+    The filename includes the unique temporary directory name to prevent
+    unauthorized file access and to correctly locate the file.
+    """
+    # Use the stored temporary directory path from app.config
+    temp_dir = current_app.config.get('VALIDATION_TEMP_DIR')
+    
+    # If no temporary directory is set, or it's a security risk, return a 404.
+    if not temp_dir or not os.path.exists(temp_dir):
+        logger.error(f"Download request failed: Temporary directory not found or expired. Path: {temp_dir}")
+        return jsonify({"error": "File not found or validation session expired."}), 404
+        
+    # Construct the full file path.
+    file_path = os.path.join(temp_dir, filename)
+
+    if not os.path.exists(file_path):
+        logger.error(f"File not found for download: {file_path}")
+        return jsonify({"error": "File not found."}), 404
+        
+    try:
+        # Use send_file with as_attachment=True to trigger a download
+        return send_file(file_path, as_attachment=True, download_name=filename)
+    except Exception as e:
+        logger.error(f"Error serving file {file_path}: {str(e)}")
+        return jsonify({"error": "Error serving file.", "details": str(e)}), 500
+
+@app.route('/api/clear-validation-results', methods=['POST'])
+@csrf.exempt
+def clear_validation_results():
+    """
+    Clears the temporary directory containing the last validation run's results.
+    """
+    temp_dir = current_app.config.get('VALIDATION_TEMP_DIR')
+    if temp_dir and os.path.exists(temp_dir):
+        try:
+            shutil.rmtree(temp_dir)
+            current_app.config['VALIDATION_TEMP_DIR'] = None
+            return jsonify({"status": "success", "message": f"Results cleared successfully."})
+        except Exception as e:
+            logger.error(f"Failed to clear validation results at {temp_dir}: {e}")
+            return jsonify({"status": "error", "message": f"Failed to clear results: {e}"}), 500
+    else:
+        return jsonify({"status": "success", "message": "No results to clear."})
 
 @app.route('/favicon.ico')
 def favicon():
@@ -3072,4 +3402,4 @@ if __name__ == '__main__':
         logger.debug(f"Attempting to create database tables for URI: {app.config['SQLALCHEMY_DATABASE_URI']}")
         db.create_all()
         logger.info("Database tables created successfully (if they didn't exist).")
-    app.run(host='0.0.0.0', port=5000, debug=False)
+    app.run(host='0.0.0.0', port=5000, debug=False)

charts/.gitignore

@@ -0,0 +1 @@
+/hapi-fhir-jpaserver-0.20.0.tgz

charts/fhirflare-ig-toolkit/.gitignore

@@ -0,0 +1 @@
+/rendered/

charts/fhirflare-ig-toolkit/Chart.yaml

@@ -0,0 +1,16 @@
+apiVersion: v2
+name: fhirflare-ig-toolkit
+version: 0.5.0
+description: Helm chart for deploying the fhirflare-ig-toolkit application
+type: application
+appVersion: "latest"
+icon: https://github.com/jgsuess/FHIRFLARE-IG-Toolkit/raw/main/static/FHIRFLARE.png
+keywords:
+  - fhir
+  - healthcare
+  - ig-toolkit
+  - implementation-guide
+home: https://github.com/jgsuess/FHIRFLARE-IG-Toolkit
+maintainers:
+  - name: Jörn Guy Süß
+    email: jgsuess@gmail.com

charts/fhirflare-ig-toolkit/templates/_helpers.tpl

@@ -0,0 +1,152 @@
+{{/*
+Expand the name of the chart.
+*/}}
+{{- define "fhirflare-ig-toolkit.name" -}}
+{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" }}
+{{- end }}
+
+{{/*
+Create a default fully qualified app name.
+We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
+If release name contains chart name it will be used as a full name.
+*/}}
+{{- define "fhirflare-ig-toolkit.fullname" -}}
+{{- if .Values.fullnameOverride }}
+{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" }}
+{{- else }}
+{{- $name := default .Chart.Name .Values.nameOverride }}
+{{- if contains $name .Release.Name }}
+{{- .Release.Name | trunc 63 | trimSuffix "-" }}
+{{- else }}
+{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" }}
+{{- end }}
+{{- end }}
+{{- end }}
+
+{{/*
+Create chart name and version as used by the chart label.
+*/}}
+{{- define "fhirflare-ig-toolkit.chart" -}}
+{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" }}
+{{- end }}
+
+{{/*
+Common labels
+*/}}
+{{- define "fhirflare-ig-toolkit.labels" -}}
+helm.sh/chart: {{ include "fhirflare-ig-toolkit.chart" . }}
+{{ include "fhirflare-ig-toolkit.selectorLabels" . }}
+{{- if .Chart.AppVersion }}
+app.kubernetes.io/version: {{ .Chart.AppVersion | quote }}
+{{- end }}
+app.kubernetes.io/managed-by: {{ .Release.Service }}
+{{- end }}
+
+{{/*
+Selector labels
+*/}}
+{{- define "fhirflare-ig-toolkit.selectorLabels" -}}
+app.kubernetes.io/name: {{ include "fhirflare-ig-toolkit.name" . }}
+app.kubernetes.io/instance: {{ .Release.Name }}
+{{- end }}
+
+{{/*
+Create the name of the service account to use
+*/}}
+{{- define "hapi-fhir-jpaserver.serviceAccountName" -}}
+{{- if .Values.serviceAccount.create }}
+{{- default (include "hapi-fhir-jpaserver.fullname" .) .Values.serviceAccount.name }}
+{{- else }}
+{{- default "default" .Values.serviceAccount.name }}
+{{- end }}
+{{- end }}
+
+{{/*
+Create a default fully qualified postgresql name.
+We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
+*/}}
+{{- define "hapi-fhir-jpaserver.postgresql.fullname" -}}
+{{- $name := default "postgresql" .Values.postgresql.nameOverride -}}
+{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" -}}
+{{- end -}}
+
+{{/*
+Get the Postgresql credentials secret name.
+*/}}
+{{- define "hapi-fhir-jpaserver.postgresql.secretName" -}}
+{{- if .Values.postgresql.enabled -}}
+    {{- if .Values.postgresql.auth.existingSecret -}}
+        {{- printf "%s" .Values.postgresql.auth.existingSecret -}}
+    {{- else -}}
+        {{- printf "%s" (include "hapi-fhir-jpaserver.postgresql.fullname" .) -}}
+    {{- end -}}
+{{- else }}
+    {{- if .Values.externalDatabase.existingSecret -}}
+        {{- printf "%s" .Values.externalDatabase.existingSecret -}}
+    {{- else -}}
+        {{ printf "%s-%s" (include "hapi-fhir-jpaserver.fullname" .) "external-db" }}
+    {{- end -}}
+{{- end -}}
+{{- end -}}
+
+{{/*
+Get the Postgresql credentials secret key.
+*/}}
+{{- define "hapi-fhir-jpaserver.postgresql.secretKey" -}}
+{{- if .Values.postgresql.enabled -}}
+    {{- if .Values.postgresql.auth.username -}}
+        {{- printf "%s" .Values.postgresql.auth.secretKeys.userPasswordKey -}}
+    {{- else -}}
+        {{- printf "%s" .Values.postgresql.auth.secretKeys.adminPasswordKey -}}
+    {{- end -}}
+{{- else }}
+    {{- if .Values.externalDatabase.existingSecret -}}
+        {{- printf "%s" .Values.externalDatabase.existingSecretKey -}}
+    {{- else -}}
+        {{- printf "postgres-password" -}}
+    {{- end -}}
+{{- end -}}
+{{- end -}}
+
+{{/*
+Add environment variables to configure database values
+*/}}
+{{- define "hapi-fhir-jpaserver.database.host" -}}
+{{- ternary (include "hapi-fhir-jpaserver.postgresql.fullname" .) .Values.externalDatabase.host .Values.postgresql.enabled -}}
+{{- end -}}
+
+{{/*
+Add environment variables to configure database values
+*/}}
+{{- define "hapi-fhir-jpaserver.database.user" -}}
+{{- if .Values.postgresql.enabled -}}
+    {{- printf "%s" .Values.postgresql.auth.username | default "postgres" -}}
+{{- else -}}
+    {{- printf "%s" .Values.externalDatabase.user -}}
+{{- end -}}
+{{- end -}}
+
+{{/*
+Add environment variables to configure database values
+*/}}
+{{- define "hapi-fhir-jpaserver.database.name" -}}
+{{- ternary .Values.postgresql.auth.database .Values.externalDatabase.database .Values.postgresql.enabled -}}
+{{- end -}}
+
+{{/*
+Add environment variables to configure database values
+*/}}
+{{- define "hapi-fhir-jpaserver.database.port" -}}
+{{- ternary "5432" .Values.externalDatabase.port .Values.postgresql.enabled -}}
+{{- end -}}
+
+{{/*
+Create the JDBC URL from the host, port and database name.
+*/}}
+{{- define "hapi-fhir-jpaserver.database.jdbcUrl" -}}
+{{- $host := (include "hapi-fhir-jpaserver.database.host" .) -}}
+{{- $port := (include "hapi-fhir-jpaserver.database.port" .) -}}
+{{- $name := (include "hapi-fhir-jpaserver.database.name" .) -}}
+{{- $appName := .Release.Name -}}
+{{ printf "jdbc:postgresql://%s:%d/%s?ApplicationName=%s" $host (int $port) $name $appName }}
+{{- end -}}

charts/fhirflare-ig-toolkit/templates/deployment.yaml

@@ -0,0 +1,91 @@
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: {{ include "fhirflare-ig-toolkit.fullname" . }}
+  labels:
+    {{- include "fhirflare-ig-toolkit.labels" . | nindent 4 }}
+spec:
+  replicas: {{ .Values.replicaCount | default 1 }}
+  selector:
+    matchLabels:
+      {{- include "fhirflare-ig-toolkit.selectorLabels" . | nindent 6 }}
+  strategy:
+    type: Recreate
+  template:
+    metadata:
+      labels:
+        {{- include "fhirflare-ig-toolkit.selectorLabels" . | nindent 8 }}
+      {{- with .Values.podAnnotations }}
+      annotations:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+    spec:
+      {{- with .Values.imagePullSecrets }}
+      imagePullSecrets:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      securityContext:
+        {{- toYaml .Values.podSecurityContext | nindent 8 }}
+      containers:
+        - name: {{ .Chart.Name }}
+          securityContext:
+            {{- toYaml .Values.securityContext | nindent 12 }}
+          image: "{{ .Values.image.repository }}:{{ .Values.image.tag | default .Chart.AppVersion }}"
+          imagePullPolicy: {{ .Values.image.pullPolicy }}
+          args: ["supervisord", "-c", "/etc/supervisord.conf"]
+          env:
+            - name: APP_BASE_URL
+              value: {{ .Values.config.appBaseUrl | default "http://localhost:5000" | quote }}
+            - name: APP_MODE
+              value: {{ .Values.config.appMode | default "lite" | quote }}
+            - name: FLASK_APP
+              value: {{ .Values.config.flaskApp | default "app.py" | quote }}
+            - name: FLASK_ENV
+              value: {{ .Values.config.flaskEnv | default "development" | quote }}
+            - name: HAPI_FHIR_URL
+              value: {{ .Values.config.externalHapiServerUrl | default "http://external-hapi-fhir:8080/fhir" | quote }}
+            - name: NODE_PATH
+              value: {{ .Values.config.nodePath | default "/usr/lib/node_modules" | quote }}
+            - name: TMPDIR
+              value: "/tmp-dir"
+          ports:
+            - name: http
+              containerPort: {{ .Values.service.port | default 5000 }}
+              protocol: TCP
+          volumeMounts:
+            - name: logs
+              mountPath: /app/logs
+            - name: tmp-dir
+              mountPath: /tmp-dir
+          {{- with .Values.resources }}
+          resources:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+          {{- with .Values.livenessProbe }}
+          livenessProbe:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+          {{- with .Values.readinessProbe }}
+          readinessProbe:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+      volumes:
+        - name: logs
+          emptyDir: {}
+        - name: tmp-dir
+          emptyDir: {}
+      # Always require Intel 64-bit architecture nodes
+      nodeSelector:
+        kubernetes.io/arch: amd64
+      {{- with .Values.nodeSelector }}
+      # Merge with user-defined nodeSelectors if any
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.affinity }}
+      affinity:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.tolerations }}
+      tolerations:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}

charts/fhirflare-ig-toolkit/templates/ingress.yaml

@@ -0,0 +1,36 @@
+{{- if .Values.ingress.enabled -}}
+{{- $fullName := include "fhirflare-ig-toolkit.fullname" . -}}
+{{- if semverCompare ">=1.19-0" .Capabilities.KubeVersion.GitVersion }}
+apiVersion: networking.k8s.io/v1
+{{- else if semverCompare ">=1.14-0" .Capabilities.KubeVersion.GitVersion }}
+apiVersion: networking.k8s.io/v1beta1
+{{- else }}
+apiVersion: extensions/v1beta1
+{{- end }}
+kind: Ingress
+metadata:
+  name: {{ $fullName }}
+  labels:
+    {{- include "fhirflare-ig-toolkit.labels" . | nindent 4 }}
+  {{- with .Values.ingress.annotations }}
+  annotations:
+    {{- toYaml . | nindent 4 }}
+  {{- end }}
+spec:
+  rules:
+  - http:
+      paths:
+      - path: /
+        {{- if semverCompare ">=1.19-0" .Capabilities.KubeVersion.GitVersion }}
+        pathType: Prefix
+        backend:
+          service:
+            name: {{ $fullName }}
+            port:
+              number: {{ .Values.service.port | default 5000 }}
+        {{- else }}
+        backend:
+          serviceName: {{ $fullName }}
+          servicePort: {{ .Values.service.port | default 5000 }}
+        {{- end }}
+{{- end }}

charts/fhirflare-ig-toolkit/templates/service.yaml

@@ -0,0 +1,18 @@
+apiVersion: v1
+kind: Service
+metadata:
+  name: {{ include "fhirflare-ig-toolkit.fullname" . }}
+  labels:
+    {{- include "fhirflare-ig-toolkit.labels" . | nindent 4 }}
+spec:
+  type: {{ .Values.service.type | default "ClusterIP" }}
+  ports:
+    - name: http
+      port: {{ .Values.service.port | default 5000 }}
+      targetPort: {{ .Values.service.port | default 5000 }}
+      protocol: TCP
+      {{- if and (eq .Values.service.type "NodePort") .Values.service.nodePort }}
+      nodePort: {{ .Values.service.nodePort }}
+      {{- end }}
+  selector:
+    {{- include "fhirflare-ig-toolkit.selectorLabels" . | nindent 4 }}

charts/fhirflare-ig-toolkit/templates/tests/test-endpoints.yaml

@@ -0,0 +1,41 @@
+apiVersion: v1
+kind: Pod
+metadata:
+  name: "{{ .Release.Name }}-fhirflare-test-endpoint"
+  labels:
+    helm.sh/chart: "{{ .Chart.Name }}-{{ .Chart.Version }}"
+    app.kubernetes.io/name: {{ .Chart.Name }}
+    app.kubernetes.io/instance: {{ .Release.Name }}
+    app.kubernetes.io/version: {{ .Chart.AppVersion | quote }}
+    app.kubernetes.io/managed-by: {{ .Release.Service }}
+    app.kubernetes.io/component: tests
+  annotations:
+    "helm.sh/hook": test
+spec:
+  restartPolicy: Never
+  containers:
+    - name: test-fhirflare-endpoint
+      image: curlimages/curl:8.12.1
+      command: ["curl", "--fail-with-body", "--retry", "5", "--retry-delay", "10"]
+      args: ["http://fhirflare:5000"]
+      securityContext:
+        allowPrivilegeEscalation: false
+        capabilities:
+          drop:
+          - ALL
+        privileged: false
+        readOnlyRootFilesystem: true
+        runAsGroup: 65534
+        runAsNonRoot: true
+        runAsUser: 65534
+        seccompProfile:
+          type: RuntimeDefault
+      resources:
+        limits:
+          cpu: 150m
+          ephemeral-storage: 2Gi
+          memory: 192Mi
+        requests:
+          cpu: 100m
+          ephemeral-storage: 50Mi
+          memory: 128Mi

charts/fhirflare-ig-toolkit/values.yaml

@@ -0,0 +1,89 @@
+# Default values for fhirflare-ig-toolkit
+replicaCount: 1
+
+image:
+  repository: ghcr.io/jgsuess/fhirflare-ig-toolkit
+  pullPolicy: Always
+  tag: "latest"
+
+imagePullSecrets: []
+nameOverride: ""
+fullnameOverride: ""
+
+# FHIRflare specific configuration
+config:
+  # Application mode: "lite" means using external HAPI server, "standalone" means running with embedded HAPI server
+  appMode: "lite"
+  # URL for the external HAPI FHIR server when in lite mode
+  externalHapiServerUrl: "http://external-hapi-fhir:8080/fhir"
+  appBaseUrl: "http://localhost:5000"
+  flaskApp: "app.py"
+  flaskEnv: "development"
+  nodePath: "/usr/lib/node_modules"
+
+service:
+  type: ClusterIP
+  port: 5000
+  nodePort: null
+
+podAnnotations: {}
+
+# podSecurityContext:
+#   fsGroup: 65532
+#   fsGroupChangePolicy: OnRootMismatch
+#   runAsNonRoot: true
+#   runAsGroup: 65532
+#   runAsUser: 65532
+#   seccompProfile:
+#     type: RuntimeDefault
+
+# securityContext:
+#   allowPrivilegeEscalation: false
+#   capabilities:
+#     drop:
+#       - ALL
+#   privileged: false
+#   readOnlyRootFilesystem: true
+#   runAsGroup: 65532
+#   runAsNonRoot: true
+#   runAsUser: 65532
+#   seccompProfile:
+#     type: RuntimeDefault
+
+resources:
+  limits:
+    cpu: 500m
+    memory: 512Mi
+    ephemeral-storage: 1Gi
+  requests:
+    cpu: 100m
+    memory: 128Mi
+    ephemeral-storage: 100Mi
+
+livenessProbe:
+  httpGet:
+    path: /
+    port: http
+  initialDelaySeconds: 30
+  periodSeconds: 10
+  timeoutSeconds: 5
+  failureThreshold: 6
+  successThreshold: 1
+
+readinessProbe:
+  httpGet:
+    path: /
+    port: http
+  initialDelaySeconds: 5
+  periodSeconds: 10
+  timeoutSeconds: 5
+  failureThreshold: 6
+  successThreshold: 1
+
+nodeSelector: {}
+tolerations: []
+affinity: {}
+
+ingress:
+  # -- whether to create a primitive Ingress to expose the FHIR server HTTP endpoint
+  enabled: false

charts/install.sh

@@ -0,0 +1,23 @@
+#!/bin/bash
+#
+# FHIRFLARE-IG-Toolkit Installation Script
+# 
+# Description:
+#   This script installs the FHIRFLARE-IG-Toolkit Helm chart into a Kubernetes cluster.
+#   It adds the FHIRFLARE-IG-Toolkit Helm repository and then installs the chart
+#   in the 'flare' namespace, creating the namespace if it doesn't exist.
+#
+# Usage:
+#   ./install.sh
+#
+# Requirements:
+#   - Helm (v3+)
+#   - kubectl configured with access to your Kubernetes cluster
+#
+
+# Add the FHIRFLARE-IG-Toolkit Helm repository
+helm repo add flare https://jgsuess.github.io/FHIRFLARE-IG-Toolkit/
+
+# Install the FHIRFLARE-IG-Toolkit chart in the 'flare' namespace
+
+helm install flare/fhirflare-ig-toolkit --namespace flare --create-namespace --generate-name --set hapi-fhir-jpaserver.postgresql.primary.persistence.storageClass=gp2 --atomic

docker-compose.yml

@@ -3,14 +3,13 @@ services:
   fhirflare:
     build:
       context: .
-      dockerfile: Dockerfile
+      dockerfile: Dockerfile.lite
     ports:
       - "5000:5000"
-      - "8080:8080" # Keep port exposed, even if Tomcat isn't running useful stuff in Lite
+      - "8080:8080"
     volumes:
       - ./instance:/app/instance
       - ./static/uploads:/app/static/uploads
-      - ./instance/hapi-h2-data/:/app/h2-data # Keep volume mounts consistent
       - ./logs:/app/logs
     environment:
       - FLASK_APP=app.py
@@ -18,5 +17,5 @@ services:
       - NODE_PATH=/usr/lib/node_modules
       - APP_MODE=standalone
       - APP_BASE_URL=http://localhost:5000
-      - HAPI_FHIR_URL=http://localhost:8080/fhir 
+      - HAPI_FHIR_URL=https://smile.sparked-fhir.com/aucore/fhir/DEFAULT/
     command: supervisord -c /etc/supervisord.conf

docker-compose/all-in-one/docker-compose.yml

@@ -0,0 +1,22 @@
+# This docker-compose file uses ephemeral Docker named volumes for all data storage.
+# These volumes persist only as long as the Docker volumes exist and are deleted if you run `docker-compose down -v`.
+# No data is stored on the host filesystem. If you want persistent storage, replace these with host mounts.
+services:
+  fhirflare-standalone:
+    image: ${FHIRFLARE_IMAGE:-ghcr.io/sudo-jhare/fhirflare-ig-toolkit-standalone:latest}
+    container_name: fhirflare-standalone
+    ports:
+      - "5000:5000"
+      - "8080:8080"
+    volumes:
+      - fhirflare-instance:/app/instance
+      - fhirflare-uploads:/app/static/uploads
+      - fhirflare-h2-data:/app/h2-data
+      - fhirflare-logs:/app/logs
+    restart: unless-stopped
+
+volumes:
+  fhirflare-instance:
+  fhirflare-uploads:
+  fhirflare-h2-data:
+  fhirflare-logs:

docker-compose/all-in-one/down.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Stop and remove all containers defined in the Docker Compose file,
+# along with any anonymous volumes attached to them.
+docker compose down --volumes

docker-compose/all-in-one/up.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Run Docker Compose
+
+docker compose up --detach --force-recreate --renew-anon-volumes --always-recreate-deps

docker-compose/lite/local/application.yaml

@@ -0,0 +1,18 @@
+hapi.fhir:
+  ig_runtime_upload_enabled: false
+  narrative_enabled: true
+  logical_urls:
+    - http://terminology.hl7.org/*
+    - https://terminology.hl7.org/*
+    - http://snomed.info/*
+    - https://snomed.info/*
+    - http://unitsofmeasure.org/*
+    - https://unitsofmeasure.org/*
+    - http://loinc.org/*
+    - https://loinc.org/*
+  cors:
+    allow_Credentials: true
+    allowed_origin:
+      - '*'
+  tester.home.name: FHIRFLARE Tester
+  inline_resource_storage_below_size: 4000

docker-compose/lite/local/docker-compose.yml

@@ -0,0 +1,50 @@
+services:
+  fhirflare:
+    image: ${FHIRFLARE_IMAGE:-ghcr.io/sudo-jhare/fhirflare-ig-toolkit-lite:latest}
+    ports:
+      - "5000:5000"
+    # Ephemeral Docker named volumes for all data storage. No data is stored on the host filesystem.
+    volumes:
+      - fhirflare-instance:/app/instance
+      - fhirflare-uploads:/app/static/uploads
+      - fhirflare-h2-data:/app/h2-data
+      - fhirflare-logs:/app/logs
+    environment:
+      - FLASK_APP=app.py
+      - FLASK_ENV=development
+      - NODE_PATH=/usr/lib/node_modules
+      - APP_MODE=lite
+      - APP_BASE_URL=http://localhost:5000
+      - HAPI_FHIR_URL=http://fhir:8080/fhir
+    command: supervisord -c /etc/supervisord.conf
+
+  fhir:
+    container_name: hapi
+    image: "hapiproject/hapi:v8.2.0-1"
+    ports:
+      - "8080:8080"
+    configs:
+      - source: hapi
+        target: /app/config/application.yaml
+    depends_on:
+      - db
+
+  db:
+    image: "postgres:17.2-bookworm"
+    restart: always
+    environment:
+      POSTGRES_PASSWORD: admin
+      POSTGRES_USER: admin
+      POSTGRES_DB: hapi
+    volumes:
+      - ./hapi.postgress.data:/var/lib/postgresql/data
+
+configs:
+  hapi:
+     file: ./application.yaml
+
+volumes:
+  fhirflare-instance:
+  fhirflare-uploads:
+  fhirflare-h2-data:
+  fhirflare-logs:

docker-compose/lite/local/down.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Stop and remove all containers defined in the Docker Compose file,
+# along with any anonymous volumes attached to them.
+docker compose down --volumes

docker-compose/lite/local/readme.md

@@ -0,0 +1,19 @@
+# FHIRFLARE IG Toolkit
+
+This directory provides scripts and configuration to start and stop a FHIRFLARE instance with an attached HAPI FHIR server using Docker Compose.
+
+## Usage
+
+- To start the FHIRFLARE toolkit and HAPI server:
+  ```sh
+  ./docker-compose/up.sh
+  ```
+
+- To stop and remove the containers and volumes:
+  ```sh
+  ./docker-compose/down.sh
+  ```
+
+The web interface will be available at [http://localhost:5000](http://localhost:5000) and the HAPI FHIR server at [http://localhost:8080/fhir](http://localhost:8080/fhir).
+
+For more details, see the configuration files in this directory.

docker-compose/lite/local/up.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Run Docker Compose
+
+docker compose up --detach --force-recreate --renew-anon-volumes --always-recreate-deps

docker-compose/lite/remote/docker-compose.yml

@@ -0,0 +1,25 @@
+services:
+  fhirflare:
+    image: ${FHIRFLARE_IMAGE:-ghcr.io/sudo-jhare/fhirflare-ig-toolkit-lite:latest}
+    ports:
+      - "5000:5000"
+    # Ephemeral Docker named volumes for all data storage. No data is stored on the host filesystem.
+    volumes:
+      - fhirflare-instance:/app/instance
+      - fhirflare-uploads:/app/static/uploads
+      - fhirflare-h2-data:/app/h2-data
+      - fhirflare-logs:/app/logs
+    environment:
+      - FLASK_APP=app.py
+      - FLASK_ENV=development
+      - NODE_PATH=/usr/lib/node_modules
+      - APP_MODE=lite
+      - APP_BASE_URL=http://localhost:5000
+      - HAPI_FHIR_URL=https://cdr.fhirlab.net/fhir
+    command: supervisord -c /etc/supervisord.conf
+
+volumes:
+  fhirflare-instance:
+  fhirflare-uploads:
+  fhirflare-h2-data:
+  fhirflare-logs:

docker-compose/lite/remote/down.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Stop and remove all containers defined in the Docker Compose file,
+# along with any anonymous volumes attached to them.
+docker compose down --volumes

docker-compose/lite/remote/readme.md

@@ -0,0 +1,19 @@
+# FHIRFLARE IG Toolkit
+
+This directory provides scripts and configuration to start and stop a FHIRFLARE instance with an attached HAPI FHIR server using Docker Compose.
+
+## Usage
+
+- To start the FHIRFLARE toolkit and HAPI server:
+  ```sh
+  ./docker-compose/up.sh
+  ```
+
+- To stop and remove the containers and volumes:
+  ```sh
+  ./docker-compose/down.sh
+  ```
+
+The web interface will be available at [http://localhost:5000](http://localhost:5000) and the HAPI FHIR server at [http://localhost:8080/fhir](http://localhost:8080/fhir).
+
+For more details, see the configuration files in this directory.

docker-compose/lite/remote/up.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Run Docker Compose
+
+docker compose up --detach --force-recreate --renew-anon-volumes --always-recreate-deps

docker/Dockerfile

@@ -0,0 +1,66 @@
+# ------------------------------------------------------------------------------
+# Dockerfile for FHIRFLARE-IG-Toolkit (Optimized for Python/Flask)
+#
+# This Dockerfile builds a container for the FHIRFLARE-IG-Toolkit application.
+#
+# Key Features:
+# - Uses python:3.11-slim as the base image for a minimal, secure Python runtime.
+# - Installs Node.js and global NPM packages (gofsh, fsh-sushi) for FHIR IG tooling.
+# - Sets up a Python virtual environment and installs all Python dependencies.
+# - Installs and configures Supervisor to manage the Flask app and related processes.
+# - Copies all necessary application code, templates, static files, and configuration.
+# - Exposes ports 5000 (Flask) and 8080 (optional, for compatibility).
+# - Entrypoint runs Supervisor for process management.
+#
+# Notes:
+# - The Dockerfile is optimized for Python. Tomcat/Java is not included.
+# - Node.js is only installed if needed for FHIR IG tooling.
+# - The image is suitable for development and production with minimal changes.
+# ------------------------------------------------------------------------------
+
+# Optimized Dockerfile for Python (Flask)
+FROM python:3.11-slim AS base
+
+# Install system dependencies
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    curl \
+    coreutils \
+    && rm -rf /var/lib/apt/lists/*
+
+# Optional: Install Node.js if needed for GoFSH/SUSHI
+RUN curl -fsSL https://deb.nodesource.com/setup_18.x | bash - \
+    && apt-get install -y --no-install-recommends nodejs \
+    && npm install -g gofsh fsh-sushi \
+    && rm -rf /var/lib/apt/lists/*
+
+# Set workdir
+WORKDIR /app
+
+# Copy requirements and install Python dependencies
+COPY requirements.txt .
+RUN python -m venv /app/venv \
+    && . /app/venv/bin/activate \
+    && pip install --upgrade pip \
+    && pip install --no-cache-dir -r requirements.txt \
+    && pip uninstall -y fhirpath || true \
+    && pip install --no-cache-dir fhirpathpy \
+    && pip install supervisor
+
+# Copy application files
+COPY app.py .
+COPY services.py .
+COPY forms.py .
+COPY package.py .
+COPY templates/ templates/
+COPY static/ static/
+COPY tests/ tests/
+COPY supervisord.conf /etc/supervisord.conf
+
+# Expose ports
+EXPOSE 5000 8080
+
+# Set environment
+ENV PATH="/app/venv/bin:$PATH"
+
+# Start supervisord
+CMD ["supervisord", "-c", "/etc/supervisord.conf"]

docker/build-docker.sh

@@ -0,0 +1,7 @@
+#!/bin/bash
+# Build FHIRFLARE-IG-Toolkit Docker image
+
+# Build the image using the Dockerfile in the docker directory
+docker build -f Dockerfile -t fhirflare-ig-toolkit:latest ..
+
+echo "Docker image built successfully"

forms.py

@@ -1,6 +1,6 @@
 # forms.py
 from flask_wtf import FlaskForm
-from wtforms import StringField, SelectField, TextAreaField, BooleanField, SubmitField, FileField, PasswordField
+from wtforms import StringField, SelectField, TextAreaField, BooleanField, SubmitField, FileField, PasswordField, SelectMultipleField
 from wtforms.validators import DataRequired, Regexp, ValidationError, URL, Optional, InputRequired
 from flask import request
 import json
@@ -306,4 +306,64 @@ class FhirRequestForm(FlaskForm):
                 if not self.basic_auth_password.data:
                     self.basic_auth_password.errors.append('Password is required for Basic Authentication with a custom URL.')
                     return False
-        return True
+        return True
+
+class IgYamlForm(FlaskForm):
+    """Form to select IGs for YAML generation."""
+    igs = SelectMultipleField('Select IGs to include', validators=[DataRequired()])
+    generate_yaml = SubmitField('Generate YAML')
+
+# --- New ValidationForm class for the new page ---
+class ValidationForm(FlaskForm):
+    """Form for validating a single FHIR resource with various options."""
+    # Added fields to match the HTML template
+    package_name = StringField('Package Name', validators=[Optional()])
+    version = StringField('Package Version', validators=[Optional()])
+    
+    # Main content fields
+    fhir_resource = TextAreaField('FHIR Resource (JSON or XML)', validators=[InputRequired()],
+                                  render_kw={'placeholder': 'Paste your FHIR JSON here...'})
+    fhir_version = SelectField('FHIR Version', choices=[
+        ('4.0.1', 'R4 (4.0.1)'),
+        ('3.0.2', 'STU3 (3.0.2)'),
+        ('5.0.0', 'R5 (5.0.0)')
+    ], default='4.0.1', validators=[DataRequired()])
+    
+    # Flags and options from validator settings.pdf
+    do_native = BooleanField('Native Validation (doNative)')
+    hint_about_must_support = BooleanField('Must Support (hintAboutMustSupport)')
+    assume_valid_rest_references = BooleanField('Assume Valid Rest References (assumeValidRestReferences)')
+    no_extensible_binding_warnings = BooleanField('Extensible Binding Warnings (noExtensibleBindingWarnings)')
+    show_times = BooleanField('Show Times (-show-times)')
+    allow_example_urls = BooleanField('Allow Example URLs (-allow-example-urls)')
+    check_ips_codes = BooleanField('Check IPS Codes (-check-ips-codes)')
+    allow_any_extensions = BooleanField('Allow Any Extensions (-allow-any-extensions)')
+    tx_routing = BooleanField('Show Terminology Routing (-tx-routing)')
+    
+    # SNOMED CT options
+    snomed_ct_version = SelectField('Select SNOMED Version', choices=[
+        ('', '-- No selection --'),
+        ('intl', 'International edition (900000000000207008)'),
+        ('us', 'US edition (731000124108)'),
+        ('uk', 'United Kingdom Edition (999000041000000102)'),
+        ('es', 'Spanish Language Edition (449081005)'),
+        ('nl', 'Netherlands Edition (11000146104)'),
+        ('ca', 'Canadian Edition (20611000087101)'),
+        ('dk', 'Danish Edition (554471000005108)'),
+        ('se', 'Swedish Edition (45991000052106)'),
+        ('au', 'Australian Edition (32506021000036107)'),
+        ('be', 'Belgium Edition (11000172109)')
+    ], validators=[Optional()])
+    
+    # Text input fields
+    profiles = StringField('Profiles',
+                           validators=[Optional()],
+                           render_kw={'placeholder': 'e.g. http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient'})
+    extensions = StringField('Extensions',
+                             validators=[Optional()],
+                             render_kw={'placeholder': 'e.g. http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace'})
+    terminology_server = StringField('Terminology Server',
+                                     validators=[Optional()],
+                                     render_kw={'placeholder': 'e.g. http://tx.fhir.org'})
+    
+    submit = SubmitField('Validate')

instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.metadata.json

@@ -1,42 +0,0 @@
-{
-  "package_name": "example.fhir.ph.core.r4",
-  "version": "0.1.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.terminology.r4",
-      "version": "6.4.0"
-    },
-    {
-      "name": "hl7.fhir.uv.extensions.r4",
-      "version": "5.2.0"
-    },
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.fhir.uv.extensions.r4",
-      "version": "5.2.0"
-    },
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-08-01T00:48:13.000931+00:00"
-}

instance/fhir_packages/hl7.fhir.au.base-5.1.0-preview.metadata.json

@@ -1,22 +0,0 @@
-{
-  "package_name": "hl7.fhir.au.base",
-  "version": "5.1.0-preview",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.terminology.r4",
-      "version": "6.2.0"
-    },
-    {
-      "name": "hl7.fhir.uv.extensions.r4",
-      "version": "5.2.0"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:17.475734+00:00"
-}

instance/fhir_packages/hl7.fhir.au.core-1.1.0-preview.metadata.json

@@ -1,34 +0,0 @@
-{
-  "package_name": "hl7.fhir.au.core",
-  "version": "1.1.0-preview",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.terminology.r4",
-      "version": "6.2.0"
-    },
-    {
-      "name": "hl7.fhir.uv.extensions.r4",
-      "version": "5.2.0"
-    },
-    {
-      "name": "hl7.fhir.au.base",
-      "version": "5.1.0-preview"
-    },
-    {
-      "name": "hl7.fhir.uv.smart-app-launch",
-      "version": "2.1.0"
-    },
-    {
-      "name": "hl7.fhir.uv.ipa",
-      "version": "1.0.0"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:15.067826+00:00"
-}

instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json

@@ -1,9 +0,0 @@
-{
-  "package_name": "hl7.fhir.r4.core",
-  "version": "4.0.1",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-08-01T00:48:12.995792+00:00"
-}

instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json

@@ -1,14 +0,0 @@
-{
-  "package_name": "hl7.fhir.uv.extensions.r4",
-  "version": "5.2.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-08-01T00:48:12.196313+00:00"
-}

instance/fhir_packages/hl7.fhir.uv.ipa-1.0.0.metadata.json

@@ -1,22 +0,0 @@
-{
-  "package_name": "hl7.fhir.uv.ipa",
-  "version": "1.0.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.terminology.r4",
-      "version": "5.0.0"
-    },
-    {
-      "name": "hl7.fhir.uv.smart-app-launch",
-      "version": "2.0.0"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:17.590266+00:00"
-}

instance/fhir_packages/hl7.fhir.uv.smart-app-launch-2.0.0.metadata.json

@@ -1,14 +0,0 @@
-{
-  "package_name": "hl7.fhir.uv.smart-app-launch",
-  "version": "2.0.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:18.256800+00:00"
-}

instance/fhir_packages/hl7.fhir.uv.smart-app-launch-2.1.0.metadata.json

@@ -1,18 +0,0 @@
-{
-  "package_name": "hl7.fhir.uv.smart-app-launch",
-  "version": "2.1.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.terminology.r4",
-      "version": "5.0.0"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:17.529611+00:00"
-}

instance/fhir_packages/hl7.terminology.r4-5.0.0.metadata.json

@@ -1,14 +0,0 @@
-{
-  "package_name": "hl7.terminology.r4",
-  "version": "5.0.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:18.216757+00:00"
-}

instance/fhir_packages/hl7.terminology.r4-6.2.0.metadata.json

@@ -1,14 +0,0 @@
-{
-  "package_name": "hl7.terminology.r4",
-  "version": "6.2.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-05-04T12:29:17.148041+00:00"
-}

instance/fhir_packages/hl7.terminology.r4-6.4.0.metadata.json

@@ -1,22 +0,0 @@
-{
-  "package_name": "hl7.terminology.r4",
-  "version": "6.4.0",
-  "dependency_mode": "recursive",
-  "imported_dependencies": [
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    },
-    {
-      "name": "hl7.fhir.uv.extensions.r4",
-      "version": "5.2.0"
-    },
-    {
-      "name": "hl7.fhir.r4.core",
-      "version": "4.0.1"
-    }
-  ],
-  "complies_with_profiles": [],
-  "imposed_profiles": [],
-  "timestamp": "2025-08-01T00:48:11.281867+00:00"
-}

instance/fhirflare_debug.log

@@ -1,740 +0,0 @@
-2025-08-01 00:44:39,706 - __main__ - INFO - --- File logging initialized to /app/instance/fhirflare_debug.log (Level: DEBUG) ---
-2025-08-01 00:44:39,707 - __main__ - INFO - Application running in mode: standalone
-2025-08-01 00:44:39,708 - __main__ - DEBUG - Instance path configuration: /app/instance
-2025-08-01 00:44:39,709 - __main__ - DEBUG - Database URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,710 - __main__ - DEBUG - Packages path: /app/instance/fhir_packages
-2025-08-01 00:44:39,724 - __main__ - DEBUG - Flask instance folder path: /app/instance
-2025-08-01 00:44:39,731 - __main__ - DEBUG - Directories created/verified: Instance: /app/instance, Packages: /app/instance/fhir_packages
-2025-08-01 00:44:39,759 - __main__ - DEBUG - Attempting to create database tables for URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,797 - __main__ - INFO - Database tables created/verified successfully.
-2025-08-01 00:44:39,804 - __main__ - DEBUG - Instance path configuration: /app/instance
-2025-08-01 00:44:39,806 - __main__ - DEBUG - Database URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,807 - __main__ - DEBUG - Packages path: /app/instance/fhir_packages
-2025-08-01 00:44:39,808 - __main__ - DEBUG - Flask instance folder path: /app/instance
-2025-08-01 00:44:39,811 - __main__ - DEBUG - Directories created/verified: Instance: /app/instance, Packages: /app/instance/fhir_packages
-2025-08-01 00:44:39,812 - __main__ - DEBUG - Attempting to create database tables for URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,822 - __main__ - INFO - Database tables created successfully (if they didn't exist).
-2025-08-01 00:44:39,825 - werkzeug - INFO - WARNING: This is a development server. Do not use it in a production deployment. Use a production WSGI server instead.
- * Running on all addresses (0.0.0.0)
- * Running on http://127.0.0.1:5000
- * Running on http://172.18.0.2:5000
-2025-08-01 00:44:39,826 - werkzeug - INFO - Press CTRL+C to quit
-2025-08-01 00:45:00,413 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET / HTTP/1.1" 200 -
-2025-08-01 00:45:00,466 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/FHIRFLARE.png HTTP/1.1" 200 -
-2025-08-01 00:45:00,481 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:00,493 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:45:00,539 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:01,469 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:01] "GET /static/favicon.ico HTTP/1.1" 200 -
-2025-08-01 00:45:06,325 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:45:06,344 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:06,348 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:06,349 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:18,005 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /validate-sample HTTP/1.1" 200 -
-2025-08-01 00:47:18,023 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:18,026 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:18,030 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:18,034 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:47:27,948 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:47:27,969 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:27,970 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:27,972 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:43,826 - services - INFO - Starting manual import for /tmp/tmpo2f3s9g5/example.fhir.ph.core.r4-0.1.0.tgz (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:43,827 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:43,831 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:47:43,841 - services - DEBUG - Parsed '/tmp/tmpo2f3s9g5/example.fhir.ph.core.r4-0.1.0.tgz' -> name='/tmp/tmpo2f3s9g5/example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:47:43,842 - services - INFO - Manually processing package: example.fhir.ph.core.r4-0.1.0.tgz (/tmp/tmpo2f3s9g5/example.fhir.ph.core.r4#0.1.0)
-2025-08-01 00:47:43,843 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:43,844 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:43,845 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:43,848 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:43,850 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:43,852 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:43,853 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:44,379 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:44,388 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:44,389 - services - INFO - Processing dependency hl7.terminology.r4#6.4.0
-2025-08-01 00:47:44,390 - services - INFO - Starting manual import for hl7.terminology.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:44,391 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:44,393 - services - INFO - Attempting manual download of hl7.terminology.r4#6.4.0
-2025-08-01 00:47:44,398 - urllib3.connectionpool - DEBUG - Starting new HTTPS connection (1): packages.fhir.org:443
-2025-08-01 00:47:46,170 - urllib3.connectionpool - DEBUG - https://packages.fhir.org:443 "GET /hl7.terminology.r4/6.4.0 HTTP/1.1" 200 5053901
-2025-08-01 00:47:49,116 - services - INFO - Manually downloaded hl7.terminology.r4#6.4.0 to /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz
-2025-08-01 00:47:49,118 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz' -> name='/app/instance/fhir.packages/hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:47:49,119 - services - INFO - Manually processing package: hl7.terminology.r4-6.4.0.tgz (/app/instance/fhir.packages/hl7.terminology.r4#6.4.0)
-2025-08-01 00:47:49,132 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,133 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,133 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,135 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,136 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:49,138 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:49,138 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:49,396 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,401 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:49,401 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:49,402 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,402 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,403 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:49,404 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:47:49,406 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:49,406 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:47:49,461 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,462 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,462 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,464 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,465 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:49,466 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:49,466 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:49,731 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,735 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:49,736 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,740 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:47:49,740 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,741 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,741 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,743 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,745 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:49,746 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:49,747 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,011 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,014 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,015 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,018 - services - INFO - Saved metadata for hl7.terminology.r4#6.4.0 at /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.metadata.json
-2025-08-01 00:47:50,019 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,019 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,019 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,020 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,021 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:47:50,022 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:50,023 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:47:50,079 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,080 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,081 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,082 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,083 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,083 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:50,084 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,353 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,357 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,358 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,364 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:47:50,364 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,365 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,365 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,366 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,367 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,368 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:50,369 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,631 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,634 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,634 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,635 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,636 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,637 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,638 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:47:50,639 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:50,639 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:47:50,694 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,695 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,695 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,697 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,697 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,698 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:50,699 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,986 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,989 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,990 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,993 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:47:50,994 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,994 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,995 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,997 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,998 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,999 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:51,000 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:51,247 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,250 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:51,251 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,252 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:51,252 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,253 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,254 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:51,255 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:51,255 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:51,509 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,512 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:51,513 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,513 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:51,514 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,515 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,516 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:51,518 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:51,518 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:51,779 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,782 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:51,783 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,790 - services - INFO - Saved metadata for example.fhir.ph.core.r4#0.1.0 at /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.metadata.json
-2025-08-01 00:47:51,792 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:51] "POST /manual-import-ig HTTP/1.1" 302 -
-2025-08-01 00:47:51,808 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
-2025-08-01 00:47:51,811 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:47:51,819 - services - DEBUG - Parsed 'hl7.fhir.au.base-5.1.0-preview.tgz' -> name='hl7.fhir.au.base', version='5.1.0-preview'
-2025-08-01 00:47:51,846 - services - DEBUG - Parsed 'hl7.fhir.au.core-1.1.0-preview.tgz' -> name='hl7.fhir.au.core', version='1.1.0-preview'
-2025-08-01 00:47:51,863 - services - DEBUG - Parsed 'hl7.fhir.r4.core-4.0.1.tgz' -> name='hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:52,313 - services - DEBUG - Parsed 'hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:52,375 - services - DEBUG - Parsed 'hl7.fhir.uv.ipa-1.0.0.tgz' -> name='hl7.fhir.uv.ipa', version='1.0.0'
-2025-08-01 00:47:52,384 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.0.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.0.0'
-2025-08-01 00:47:52,387 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.1.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.1.0'
-2025-08-01 00:47:52,391 - services - DEBUG - Parsed 'hl7.terminology.r4-5.0.0.tgz' -> name='hl7.terminology.r4', version='5.0.0'
-2025-08-01 00:47:52,627 - services - DEBUG - Parsed 'hl7.terminology.r4-6.2.0.tgz' -> name='hl7.terminology.r4', version='6.2.0'
-2025-08-01 00:47:52,920 - services - DEBUG - Parsed 'hl7.terminology.r4-6.4.0.tgz' -> name='hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:47:53,250 - __main__ - DEBUG - Found packages: 11
-2025-08-01 00:47:53,250 - __main__ - DEBUG - Errors during package listing: []
-2025-08-01 00:47:53,251 - __main__ - DEBUG - Duplicate groups: {'hl7.fhir.uv.smart-app-launch': ['2.0.0', '2.1.0'], 'hl7.terminology.r4': ['5.0.0', '6.2.0', '6.4.0']}
-2025-08-01 00:47:53,269 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /view-igs HTTP/1.1" 200 -
-2025-08-01 00:47:53,299 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:53,301 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:53,304 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:47:53,307 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:55,256 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:47:55,270 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:55,272 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:55,275 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:48:09,986 - services - INFO - Starting manual import for /tmp/tmpa5kg6gav/example.fhir.ph.core.r4-0.1.0.tgz (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:09,987 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:09,989 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:48:09,995 - services - DEBUG - Parsed '/tmp/tmpa5kg6gav/example.fhir.ph.core.r4-0.1.0.tgz' -> name='/tmp/tmpa5kg6gav/example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:48:09,996 - services - INFO - Manually processing package: example.fhir.ph.core.r4-0.1.0.tgz (/tmp/tmpa5kg6gav/example.fhir.ph.core.r4#0.1.0)
-2025-08-01 00:48:09,997 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:09,997 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:09,997 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:09,998 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,000 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:10,002 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:10,003 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:10,319 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,323 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:10,324 - services - INFO - Processing dependency hl7.terminology.r4#6.4.0
-2025-08-01 00:48:10,324 - services - INFO - Starting manual import for hl7.terminology.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,324 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,325 - services - INFO - Attempting manual download of hl7.terminology.r4#6.4.0
-2025-08-01 00:48:10,326 - services - INFO - Manual package hl7.terminology.r4#6.4.0 already exists at /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz
-2025-08-01 00:48:10,327 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz' -> name='/app/instance/fhir.packages/hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:48:10,328 - services - INFO - Manually processing package: hl7.terminology.r4-6.4.0.tgz (/app/instance/fhir.packages/hl7.terminology.r4#6.4.0)
-2025-08-01 00:48:10,330 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,330 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,331 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,332 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,334 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:10,336 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:10,336 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:10,586 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,590 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:10,590 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:10,591 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,591 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,593 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:10,594 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:48:10,595 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:10,596 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:48:10,655 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,655 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,656 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,657 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,659 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:10,660 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:10,661 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:10,997 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,004 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,005 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,008 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:48:11,009 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,010 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,011 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,012 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,014 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,016 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,016 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:11,275 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,279 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,280 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,283 - services - INFO - Saved metadata for hl7.terminology.r4#6.4.0 at /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.metadata.json
-2025-08-01 00:48:11,284 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,285 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,285 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,287 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,288 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:48:11,289 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:11,289 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:48:11,344 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,345 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,345 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,346 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,347 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,348 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,349 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:11,601 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,605 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,605 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,609 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:48:11,610 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,610 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,611 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,613 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,614 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,615 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,616 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:11,867 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,871 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,871 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,872 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,872 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,874 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,875 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:48:11,876 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:11,877 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:48:11,932 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,932 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,933 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,935 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,936 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,937 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,937 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,191 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,194 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,194 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,198 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:48:12,199 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,200 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:12,201 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,202 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,203 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:12,205 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:12,205 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,451 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,456 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,456 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,457 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:12,457 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,458 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,459 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:12,460 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:12,461 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,720 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,723 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,724 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,724 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:12,725 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,726 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,727 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:12,728 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:12,728 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,994 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,997 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,998 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:13,003 - services - INFO - Saved metadata for example.fhir.ph.core.r4#0.1.0 at /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.metadata.json
-2025-08-01 00:48:13,004 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:13] "POST /manual-import-ig HTTP/1.1" 302 -
-2025-08-01 00:48:13,014 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
-2025-08-01 00:48:13,016 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:48:13,023 - services - DEBUG - Parsed 'hl7.fhir.au.base-5.1.0-preview.tgz' -> name='hl7.fhir.au.base', version='5.1.0-preview'
-2025-08-01 00:48:13,047 - services - DEBUG - Parsed 'hl7.fhir.au.core-1.1.0-preview.tgz' -> name='hl7.fhir.au.core', version='1.1.0-preview'
-2025-08-01 00:48:13,064 - services - DEBUG - Parsed 'hl7.fhir.r4.core-4.0.1.tgz' -> name='hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:13,486 - services - DEBUG - Parsed 'hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:13,543 - services - DEBUG - Parsed 'hl7.fhir.uv.ipa-1.0.0.tgz' -> name='hl7.fhir.uv.ipa', version='1.0.0'
-2025-08-01 00:48:13,551 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.0.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.0.0'
-2025-08-01 00:48:13,554 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.1.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.1.0'
-2025-08-01 00:48:13,558 - services - DEBUG - Parsed 'hl7.terminology.r4-5.0.0.tgz' -> name='hl7.terminology.r4', version='5.0.0'
-2025-08-01 00:48:13,743 - services - DEBUG - Parsed 'hl7.terminology.r4-6.2.0.tgz' -> name='hl7.terminology.r4', version='6.2.0'
-2025-08-01 00:48:13,974 - services - DEBUG - Parsed 'hl7.terminology.r4-6.4.0.tgz' -> name='hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:48:14,164 - __main__ - DEBUG - Found packages: 11
-2025-08-01 00:48:14,165 - __main__ - DEBUG - Errors during package listing: []
-2025-08-01 00:48:14,166 - __main__ - DEBUG - Duplicate groups: {'hl7.fhir.uv.smart-app-launch': ['2.0.0', '2.1.0'], 'hl7.terminology.r4': ['5.0.0', '6.2.0', '6.4.0']}
-2025-08-01 00:48:14,169 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /view-igs HTTP/1.1" 200 -
-2025-08-01 00:48:14,185 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:14,187 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:48:14,188 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:14,189 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:48:19,052 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /validate-sample HTTP/1.1" 200 -
-2025-08-01 00:48:19,067 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:19,068 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:19,069 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:48:19,071 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:50:33,336 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:50:33,337 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:50:33,337 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:50:33,339 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:50:34,754 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:50:34,995 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:50:34,997 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:50:34] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:50:35,010 - services - DEBUG - Received validate-sample request
-2025-08-01 00:50:35,011 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=13970
-2025-08-01 00:50:35,012 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,014 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,017 - services - DEBUG - Validating Bundle against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:50:35,017 - services - DEBUG - Validating bundle against example.fhir.ph.core.r4#0.1.0, include_dependencies=True
-2025-08-01 00:50:35,018 - services - DEBUG - Found 14 local references in the bundle.
-2025-08-01 00:50:35,019 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,021 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient
-2025-08-01 00:50:35,022 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,027 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,028 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient'
-2025-08-01 00:50:35,039 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,040 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' at path: package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:50:35,042 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:50:35,043 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:50:35,046 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:50:35,048 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:50:35,050 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:50:35,052 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:50:35,054 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:50:35,055 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,057 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,059 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter
-2025-08-01 00:50:35,060 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,065 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,066 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter'
-2025-08-01 00:50:35,071 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,073 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' at path: package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:50:35,074 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:50:35,075 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:50:35,077 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:50:35,078 - services - DEBUG - Navigating FHIR path: Encounter.status, extension_url=None
-2025-08-01 00:50:35,079 - services - DEBUG - Navigating FHIR path: Encounter.class, extension_url=None
-2025-08-01 00:50:35,081 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,082 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,083 - services - DEBUG - No profile in resource, using base type as identifier: Condition
-2025-08-01 00:50:35,084 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,088 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,090 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,106 - services - INFO - SD matching identifier 'Condition' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,108 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:50:35,112 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:50:35,113 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:50:35,116 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:50:35,117 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,182 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-Condition.json
-2025-08-01 00:50:35,184 - services - DEBUG - Found SD at package/StructureDefinition-Condition.json
-2025-08-01 00:50:35,185 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:50:35,186 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:50:35,187 - services - DEBUG - Navigating FHIR path: Condition.subject, extension_url=None
-2025-08-01 00:50:35,188 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,190 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,192 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication
-2025-08-01 00:50:35,192 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,196 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,197 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication'
-2025-08-01 00:50:35,204 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,206 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' at path: package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:50:35,207 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:50:35,207 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:50:35,209 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:50:35,210 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,211 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,213 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation
-2025-08-01 00:50:35,214 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,217 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,218 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation'
-2025-08-01 00:50:35,224 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,225 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' at path: package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:50:35,226 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:50:35,227 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:50:35,228 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:50:35,229 - services - DEBUG - Navigating FHIR path: Observation.status, extension_url=None
-2025-08-01 00:50:35,230 - services - DEBUG - Navigating FHIR path: Observation.code, extension_url=None
-2025-08-01 00:50:35,231 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,232 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,233 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:50:35,234 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,237 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,238 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,250 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,252 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:50:35,255 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:50:35,256 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:50:35,259 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:50:35,259 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,710 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:50:35,711 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:50:35,712 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:50:35,713 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:50:35,713 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:50:35,714 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,715 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,716 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner
-2025-08-01 00:50:35,716 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,719 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,719 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner'
-2025-08-01 00:50:35,727 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,728 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' at path: package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:50:35,729 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:50:35,729 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:50:35,730 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:50:35,731 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,731 - services - DEBUG - Bundle validation result: valid=True, errors=0, warnings=0, resources=7
-2025-08-01 00:50:35,732 - services - INFO - Validation result for Bundle against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,732 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:50:35] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:51:28,784 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:51:28,825 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:28,828 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:28,839 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:51:39,832 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
-2025-08-01 00:51:39,838 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:51:39,851 - services - DEBUG - Parsed 'hl7.fhir.au.base-5.1.0-preview.tgz' -> name='hl7.fhir.au.base', version='5.1.0-preview'
-2025-08-01 00:51:39,892 - services - DEBUG - Parsed 'hl7.fhir.au.core-1.1.0-preview.tgz' -> name='hl7.fhir.au.core', version='1.1.0-preview'
-2025-08-01 00:51:39,918 - services - DEBUG - Parsed 'hl7.fhir.r4.core-4.0.1.tgz' -> name='hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:51:40,732 - services - DEBUG - Parsed 'hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:51:40,837 - services - DEBUG - Parsed 'hl7.fhir.uv.ipa-1.0.0.tgz' -> name='hl7.fhir.uv.ipa', version='1.0.0'
-2025-08-01 00:51:40,855 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.0.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.0.0'
-2025-08-01 00:51:40,860 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.1.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.1.0'
-2025-08-01 00:51:40,868 - services - DEBUG - Parsed 'hl7.terminology.r4-5.0.0.tgz' -> name='hl7.terminology.r4', version='5.0.0'
-2025-08-01 00:51:41,223 - services - DEBUG - Parsed 'hl7.terminology.r4-6.2.0.tgz' -> name='hl7.terminology.r4', version='6.2.0'
-2025-08-01 00:51:41,669 - services - DEBUG - Parsed 'hl7.terminology.r4-6.4.0.tgz' -> name='hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:51:42,069 - __main__ - DEBUG - Found packages: 11
-2025-08-01 00:51:42,070 - __main__ - DEBUG - Errors during package listing: []
-2025-08-01 00:51:42,071 - __main__ - DEBUG - Duplicate groups: {'hl7.fhir.uv.smart-app-launch': ['2.0.0', '2.1.0'], 'hl7.terminology.r4': ['5.0.0', '6.2.0', '6.4.0']}
-2025-08-01 00:51:42,075 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /view-igs HTTP/1.1" 200 -
-2025-08-01 00:51:42,100 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:42,103 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:42,108 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:51:42,108 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:54:20,189 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /validate-sample HTTP/1.1" 200 -
-2025-08-01 00:54:20,209 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:54:20,212 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:54:20,216 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:54:20,218 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:54:39,350 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:54:39,351 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:54:39,353 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:54:39,356 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:54:39,413 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:54:39,611 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:54:39,613 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:39] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:54:39,639 - services - DEBUG - Received validate-sample request
-2025-08-01 00:54:39,641 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=13970
-2025-08-01 00:54:39,643 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,647 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,650 - services - DEBUG - Validating Bundle against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:54:39,652 - services - DEBUG - Validating bundle against example.fhir.ph.core.r4#0.1.0, include_dependencies=True
-2025-08-01 00:54:39,653 - services - DEBUG - Found 14 local references in the bundle.
-2025-08-01 00:54:39,655 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,659 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient
-2025-08-01 00:54:39,660 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,668 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,670 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient'
-2025-08-01 00:54:39,688 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,689 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' at path: package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:54:39,692 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:54:39,693 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:54:39,695 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:54:39,697 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:54:39,700 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:54:39,702 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:54:39,705 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:54:39,708 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,710 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,714 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter
-2025-08-01 00:54:39,715 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,724 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,725 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter'
-2025-08-01 00:54:39,734 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,736 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' at path: package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:54:39,739 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:54:39,740 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:54:39,742 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:54:39,744 - services - DEBUG - Navigating FHIR path: Encounter.status, extension_url=None
-2025-08-01 00:54:39,746 - services - DEBUG - Navigating FHIR path: Encounter.class, extension_url=None
-2025-08-01 00:54:39,747 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,749 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,753 - services - DEBUG - No profile in resource, using base type as identifier: Condition
-2025-08-01 00:54:39,755 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,764 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,766 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:39,791 - services - INFO - SD matching identifier 'Condition' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,794 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:54:39,799 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:54:39,803 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:54:39,808 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:54:39,810 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:39,902 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-Condition.json
-2025-08-01 00:54:39,904 - services - DEBUG - Found SD at package/StructureDefinition-Condition.json
-2025-08-01 00:54:39,905 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:54:39,907 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:54:39,908 - services - DEBUG - Navigating FHIR path: Condition.subject, extension_url=None
-2025-08-01 00:54:39,910 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,911 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,914 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication
-2025-08-01 00:54:39,915 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,923 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,924 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication'
-2025-08-01 00:54:39,934 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,936 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' at path: package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:54:39,938 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:54:39,939 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:54:39,940 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:54:39,942 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,943 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,945 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation
-2025-08-01 00:54:39,946 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,952 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,953 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation'
-2025-08-01 00:54:39,964 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,966 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' at path: package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:54:39,968 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:54:39,969 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:54:39,970 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:54:39,971 - services - DEBUG - Navigating FHIR path: Observation.status, extension_url=None
-2025-08-01 00:54:39,973 - services - DEBUG - Navigating FHIR path: Observation.code, extension_url=None
-2025-08-01 00:54:39,975 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,976 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,980 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:54:39,981 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,988 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,990 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:40,015 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:40,017 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:54:40,022 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:54:40,024 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:54:40,028 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:54:40,029 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:41,057 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:54:41,059 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:54:41,060 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:54:41,061 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:54:41,063 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:54:41,065 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:41,066 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:41,070 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner
-2025-08-01 00:54:41,071 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:41,077 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:41,078 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner'
-2025-08-01 00:54:41,096 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:41,098 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' at path: package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:54:41,100 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:54:41,101 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:54:41,103 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:54:41,105 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:41,106 - services - DEBUG - Bundle validation result: valid=True, errors=0, warnings=0, resources=7
-2025-08-01 00:54:41,107 - services - INFO - Validation result for Bundle against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:54:41,109 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:41] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:55:46,274 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:55:46,275 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:55:46,276 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:55:46,278 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:55:46,303 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:55:46,409 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:55:46,411 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:55:46] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:55:46,425 - services - DEBUG - Received validate-sample request
-2025-08-01 00:55:46,427 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:55:46,428 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:55:46,431 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,434 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:55:46,435 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:55:46,438 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:55:46,439 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,445 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,446 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:55:46,468 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,470 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:55:46,475 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:55:46,477 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:55:46,481 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:55:46,482 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:55:47,472 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:55:47,474 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:55:47,474 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:55:47,476 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:55:47,477 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:55:47,479 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:55:47,480 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:55:47,481 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:55:47] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:56:01,610 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:56:01,611 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:56:01,612 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:56:01,614 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:56:01,634 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:56:01,712 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:56:01,714 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:01] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:56:01,726 - services - DEBUG - Received validate-sample request
-2025-08-01 00:56:01,727 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:56:01,728 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:01,731 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,733 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:56:01,735 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:01,738 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:56:01,739 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,743 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,744 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:01,759 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,761 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:56:01,764 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:56:01,766 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:56:01,770 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:56:01,771 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:02,425 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:02,427 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:02,428 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:02,430 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:02,431 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:56:02,433 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:56:02,434 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:56:02,435 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:02] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:56:14,054 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:56:14,055 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:56:14,056 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:56:14,057 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:56:14,070 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:56:14,147 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:56:14,149 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:14] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:56:14,157 - services - DEBUG - Received validate-sample request
-2025-08-01 00:56:14,158 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:56:14,160 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:14,163 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,166 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:56:14,166 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:14,170 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:56:14,172 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,177 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,178 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:14,193 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,195 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:56:14,197 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:56:14,198 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:56:14,201 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:56:14,202 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:14,875 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:14,877 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:14,878 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:14,879 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:14,881 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:56:14,883 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:56:14,884 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:56:14,885 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:14] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:56:18,236 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:56:18,237 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:56:18,238 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:56:18,239 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:56:18,257 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:56:18,348 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:56:18,350 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:18] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:56:18,364 - services - DEBUG - Received validate-sample request
-2025-08-01 00:56:18,366 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:56:18,366 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:18,369 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,373 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:56:18,374 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:18,377 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:56:18,378 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,383 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,384 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:18,401 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,403 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:56:18,406 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:56:18,408 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:56:18,412 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:56:18,413 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:19,183 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:19,184 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:19,185 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:19,186 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:19,187 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:56:19,189 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:56:19,190 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:56:19,191 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:19] "POST /api/validate-sample HTTP/1.1" 200 -

instance/hapi-h2-data/fhir.lock.db

@@ -1,6 +0,0 @@
-#FileLock
-#Fri Aug 01 00:44:59 UTC 2025
-server=172.18.0.2\:44371
-hostName=fd26f32c4551
-method=file
-id=1986316d3912ca2c5021ee56e639ff5ae831929a5f0

logs/flask.log

@@ -1,2 +0,0 @@
- * Serving Flask app 'app'
- * Debug mode: off

logs/flask_err.log

@@ -1,741 +0,0 @@
-fhir.resources library failed to import. XML parsing will be basic and dependency analysis for XML may be incomplete. Error: No module named 'fhir.resources.fhirtypesvalidators'
-2025-08-01 00:44:39,706 - __main__ - INFO - --- File logging initialized to /app/instance/fhirflare_debug.log (Level: DEBUG) ---
-2025-08-01 00:44:39,707 - __main__ - INFO - Application running in mode: standalone
-2025-08-01 00:44:39,708 - __main__ - DEBUG - Instance path configuration: /app/instance
-2025-08-01 00:44:39,709 - __main__ - DEBUG - Database URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,710 - __main__ - DEBUG - Packages path: /app/instance/fhir_packages
-2025-08-01 00:44:39,724 - __main__ - DEBUG - Flask instance folder path: /app/instance
-2025-08-01 00:44:39,731 - __main__ - DEBUG - Directories created/verified: Instance: /app/instance, Packages: /app/instance/fhir_packages
-2025-08-01 00:44:39,759 - __main__ - DEBUG - Attempting to create database tables for URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,797 - __main__ - INFO - Database tables created/verified successfully.
-2025-08-01 00:44:39,804 - __main__ - DEBUG - Instance path configuration: /app/instance
-2025-08-01 00:44:39,806 - __main__ - DEBUG - Database URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,807 - __main__ - DEBUG - Packages path: /app/instance/fhir_packages
-2025-08-01 00:44:39,808 - __main__ - DEBUG - Flask instance folder path: /app/instance
-2025-08-01 00:44:39,811 - __main__ - DEBUG - Directories created/verified: Instance: /app/instance, Packages: /app/instance/fhir_packages
-2025-08-01 00:44:39,812 - __main__ - DEBUG - Attempting to create database tables for URI: sqlite:////app/instance/fhir_ig.db
-2025-08-01 00:44:39,822 - __main__ - INFO - Database tables created successfully (if they didn't exist).
-2025-08-01 00:44:39,825 - werkzeug - INFO - WARNING: This is a development server. Do not use it in a production deployment. Use a production WSGI server instead.
- * Running on all addresses (0.0.0.0)
- * Running on http://127.0.0.1:5000
- * Running on http://172.18.0.2:5000
-2025-08-01 00:44:39,826 - werkzeug - INFO - Press CTRL+C to quit
-2025-08-01 00:45:00,413 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET / HTTP/1.1" 200 -
-2025-08-01 00:45:00,466 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/FHIRFLARE.png HTTP/1.1" 200 -
-2025-08-01 00:45:00,481 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:00,493 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:45:00,539 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:00] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:01,469 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:01] "GET /static/favicon.ico HTTP/1.1" 200 -
-2025-08-01 00:45:06,325 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:45:06,344 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:06,348 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:45:06,349 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:45:06] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:18,005 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /validate-sample HTTP/1.1" 200 -
-2025-08-01 00:47:18,023 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:18,026 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:18,030 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:18,034 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:18] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:47:27,948 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:47:27,969 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:27,970 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:27,972 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:27] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:43,826 - services - INFO - Starting manual import for /tmp/tmpo2f3s9g5/example.fhir.ph.core.r4-0.1.0.tgz (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:43,827 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:43,831 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:47:43,841 - services - DEBUG - Parsed '/tmp/tmpo2f3s9g5/example.fhir.ph.core.r4-0.1.0.tgz' -> name='/tmp/tmpo2f3s9g5/example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:47:43,842 - services - INFO - Manually processing package: example.fhir.ph.core.r4-0.1.0.tgz (/tmp/tmpo2f3s9g5/example.fhir.ph.core.r4#0.1.0)
-2025-08-01 00:47:43,843 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:43,844 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:43,845 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:43,848 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:43,850 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:43,852 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:43,853 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:44,379 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:44,388 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:44,389 - services - INFO - Processing dependency hl7.terminology.r4#6.4.0
-2025-08-01 00:47:44,390 - services - INFO - Starting manual import for hl7.terminology.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:44,391 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:44,393 - services - INFO - Attempting manual download of hl7.terminology.r4#6.4.0
-2025-08-01 00:47:44,398 - urllib3.connectionpool - DEBUG - Starting new HTTPS connection (1): packages.fhir.org:443
-2025-08-01 00:47:46,170 - urllib3.connectionpool - DEBUG - https://packages.fhir.org:443 "GET /hl7.terminology.r4/6.4.0 HTTP/1.1" 200 5053901
-2025-08-01 00:47:49,116 - services - INFO - Manually downloaded hl7.terminology.r4#6.4.0 to /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz
-2025-08-01 00:47:49,118 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz' -> name='/app/instance/fhir.packages/hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:47:49,119 - services - INFO - Manually processing package: hl7.terminology.r4-6.4.0.tgz (/app/instance/fhir.packages/hl7.terminology.r4#6.4.0)
-2025-08-01 00:47:49,132 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,133 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,133 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,135 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,136 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:49,138 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:49,138 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:49,396 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,401 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:49,401 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:49,402 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,402 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,403 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:49,404 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:47:49,406 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:49,406 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:47:49,461 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,462 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,462 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,464 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,465 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:49,466 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:49,466 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:49,731 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,735 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:49,736 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,740 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:47:49,740 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,741 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:49,741 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:49,743 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:49,745 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:49,746 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:49,747 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,011 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,014 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,015 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,018 - services - INFO - Saved metadata for hl7.terminology.r4#6.4.0 at /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.metadata.json
-2025-08-01 00:47:50,019 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,019 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,019 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,020 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,021 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:47:50,022 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:50,023 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:47:50,079 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,080 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,081 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,082 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,083 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,083 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:50,084 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,353 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,357 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,358 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,364 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:47:50,364 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,365 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,365 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,366 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,367 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,368 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:50,369 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,631 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,634 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,634 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,635 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,636 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,637 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:47:50,638 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:47:50,639 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:50,639 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:47:50,694 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,695 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,695 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,697 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,697 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,698 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:50,699 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:50,986 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,989 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:50,990 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,993 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:47:50,994 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,994 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:50,995 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:50,997 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:50,998 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:50,999 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:51,000 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:51,247 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,250 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:51,251 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,252 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:51,252 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,253 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,254 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:51,255 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:51,255 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:51,509 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,512 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:51,513 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,513 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:47:51,514 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,515 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:47:51,516 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:47:51,518 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:51,518 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:47:51,779 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,782 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:47:51,783 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:47:51,790 - services - INFO - Saved metadata for example.fhir.ph.core.r4#0.1.0 at /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.metadata.json
-2025-08-01 00:47:51,792 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:51] "POST /manual-import-ig HTTP/1.1" 302 -
-2025-08-01 00:47:51,808 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
-2025-08-01 00:47:51,811 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:47:51,819 - services - DEBUG - Parsed 'hl7.fhir.au.base-5.1.0-preview.tgz' -> name='hl7.fhir.au.base', version='5.1.0-preview'
-2025-08-01 00:47:51,846 - services - DEBUG - Parsed 'hl7.fhir.au.core-1.1.0-preview.tgz' -> name='hl7.fhir.au.core', version='1.1.0-preview'
-2025-08-01 00:47:51,863 - services - DEBUG - Parsed 'hl7.fhir.r4.core-4.0.1.tgz' -> name='hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:47:52,313 - services - DEBUG - Parsed 'hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:47:52,375 - services - DEBUG - Parsed 'hl7.fhir.uv.ipa-1.0.0.tgz' -> name='hl7.fhir.uv.ipa', version='1.0.0'
-2025-08-01 00:47:52,384 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.0.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.0.0'
-2025-08-01 00:47:52,387 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.1.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.1.0'
-2025-08-01 00:47:52,391 - services - DEBUG - Parsed 'hl7.terminology.r4-5.0.0.tgz' -> name='hl7.terminology.r4', version='5.0.0'
-2025-08-01 00:47:52,627 - services - DEBUG - Parsed 'hl7.terminology.r4-6.2.0.tgz' -> name='hl7.terminology.r4', version='6.2.0'
-2025-08-01 00:47:52,920 - services - DEBUG - Parsed 'hl7.terminology.r4-6.4.0.tgz' -> name='hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:47:53,250 - __main__ - DEBUG - Found packages: 11
-2025-08-01 00:47:53,250 - __main__ - DEBUG - Errors during package listing: []
-2025-08-01 00:47:53,251 - __main__ - DEBUG - Duplicate groups: {'hl7.fhir.uv.smart-app-launch': ['2.0.0', '2.1.0'], 'hl7.terminology.r4': ['5.0.0', '6.2.0', '6.4.0']}
-2025-08-01 00:47:53,269 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /view-igs HTTP/1.1" 200 -
-2025-08-01 00:47:53,299 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:53,301 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:53,304 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:47:53,307 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:53] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:47:55,256 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:47:55,270 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:55,272 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:47:55,275 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:47:55] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:48:09,986 - services - INFO - Starting manual import for /tmp/tmpa5kg6gav/example.fhir.ph.core.r4-0.1.0.tgz (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:09,987 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:09,989 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:48:09,995 - services - DEBUG - Parsed '/tmp/tmpa5kg6gav/example.fhir.ph.core.r4-0.1.0.tgz' -> name='/tmp/tmpa5kg6gav/example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:48:09,996 - services - INFO - Manually processing package: example.fhir.ph.core.r4-0.1.0.tgz (/tmp/tmpa5kg6gav/example.fhir.ph.core.r4#0.1.0)
-2025-08-01 00:48:09,997 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:09,997 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:09,997 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:09,998 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,000 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:10,002 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:10,003 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:10,319 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,323 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:10,324 - services - INFO - Processing dependency hl7.terminology.r4#6.4.0
-2025-08-01 00:48:10,324 - services - INFO - Starting manual import for hl7.terminology.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,324 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,325 - services - INFO - Attempting manual download of hl7.terminology.r4#6.4.0
-2025-08-01 00:48:10,326 - services - INFO - Manual package hl7.terminology.r4#6.4.0 already exists at /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz
-2025-08-01 00:48:10,327 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.terminology.r4-6.4.0.tgz' -> name='/app/instance/fhir.packages/hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:48:10,328 - services - INFO - Manually processing package: hl7.terminology.r4-6.4.0.tgz (/app/instance/fhir.packages/hl7.terminology.r4#6.4.0)
-2025-08-01 00:48:10,330 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,330 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,331 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,332 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,334 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:10,336 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:10,336 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:10,586 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,590 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:10,590 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:10,591 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,591 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,593 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:10,594 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:48:10,595 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:10,596 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:48:10,655 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,655 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:10,656 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:10,657 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:10,659 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:10,660 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:10,661 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:10,997 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,004 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,005 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,008 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:48:11,009 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,010 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,011 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,012 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,014 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,016 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,016 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:11,275 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,279 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,280 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,283 - services - INFO - Saved metadata for hl7.terminology.r4#6.4.0 at /app/instance/fhir_packages/hl7.terminology.r4-6.4.0.metadata.json
-2025-08-01 00:48:11,284 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,285 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,285 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,287 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,288 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:48:11,289 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:11,289 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:48:11,344 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,345 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,345 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,346 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,347 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,348 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,349 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:11,601 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,605 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,605 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,609 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:48:11,610 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,610 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,611 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,613 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,614 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,615 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,616 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:11,867 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,871 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:11,871 - services - INFO - Processing dependency hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,872 - services - INFO - Starting manual import for hl7.fhir.uv.extensions.r4 (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,872 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,874 - services - INFO - Attempting manual download of hl7.fhir.uv.extensions.r4#5.2.0
-2025-08-01 00:48:11,875 - services - INFO - Manual package hl7.fhir.uv.extensions.r4#5.2.0 already exists at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz
-2025-08-01 00:48:11,876 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:11,877 - services - INFO - Manually processing package: hl7.fhir.uv.extensions.r4-5.2.0.tgz (/app/instance/fhir.packages/hl7.fhir.uv.extensions.r4#5.2.0)
-2025-08-01 00:48:11,932 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,932 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:11,933 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:11,935 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:11,936 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:11,937 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:11,937 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,191 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,194 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,194 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,198 - services - INFO - Saved metadata for hl7.fhir.uv.extensions.r4#5.2.0 at /app/instance/fhir_packages/hl7.fhir.uv.extensions.r4-5.2.0.metadata.json
-2025-08-01 00:48:12,199 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,200 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:12,201 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,202 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,203 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:12,205 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:12,205 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,451 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,456 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,456 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,457 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:12,457 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,458 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,459 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:12,460 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:12,461 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,720 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,723 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,724 - services - INFO - Processing dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,724 - services - INFO - Starting manual import for hl7.fhir.r4.core (mode=recursive, resolve_deps=True)
-2025-08-01 00:48:12,725 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,726 - services - INFO - Attempting manual download of hl7.fhir.r4.core#4.0.1
-2025-08-01 00:48:12,727 - services - INFO - Manual package hl7.fhir.r4.core#4.0.1 already exists at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:48:12,728 - services - DEBUG - Parsed '/app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.tgz' -> name='/app/instance/fhir.packages/hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:12,728 - services - INFO - Manually processing package: hl7.fhir.r4.core-4.0.1.tgz (/app/instance/fhir.packages/hl7.fhir.r4.core#4.0.1)
-2025-08-01 00:48:12,994 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:12,997 - services - INFO - Saved metadata for hl7.fhir.r4.core#4.0.1 at /app/instance/fhir_packages/hl7.fhir.r4.core-4.0.1.metadata.json
-2025-08-01 00:48:12,998 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:48:13,003 - services - INFO - Saved metadata for example.fhir.ph.core.r4#0.1.0 at /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.metadata.json
-2025-08-01 00:48:13,004 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:13] "POST /manual-import-ig HTTP/1.1" 302 -
-2025-08-01 00:48:13,014 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
-2025-08-01 00:48:13,016 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:48:13,023 - services - DEBUG - Parsed 'hl7.fhir.au.base-5.1.0-preview.tgz' -> name='hl7.fhir.au.base', version='5.1.0-preview'
-2025-08-01 00:48:13,047 - services - DEBUG - Parsed 'hl7.fhir.au.core-1.1.0-preview.tgz' -> name='hl7.fhir.au.core', version='1.1.0-preview'
-2025-08-01 00:48:13,064 - services - DEBUG - Parsed 'hl7.fhir.r4.core-4.0.1.tgz' -> name='hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:48:13,486 - services - DEBUG - Parsed 'hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:48:13,543 - services - DEBUG - Parsed 'hl7.fhir.uv.ipa-1.0.0.tgz' -> name='hl7.fhir.uv.ipa', version='1.0.0'
-2025-08-01 00:48:13,551 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.0.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.0.0'
-2025-08-01 00:48:13,554 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.1.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.1.0'
-2025-08-01 00:48:13,558 - services - DEBUG - Parsed 'hl7.terminology.r4-5.0.0.tgz' -> name='hl7.terminology.r4', version='5.0.0'
-2025-08-01 00:48:13,743 - services - DEBUG - Parsed 'hl7.terminology.r4-6.2.0.tgz' -> name='hl7.terminology.r4', version='6.2.0'
-2025-08-01 00:48:13,974 - services - DEBUG - Parsed 'hl7.terminology.r4-6.4.0.tgz' -> name='hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:48:14,164 - __main__ - DEBUG - Found packages: 11
-2025-08-01 00:48:14,165 - __main__ - DEBUG - Errors during package listing: []
-2025-08-01 00:48:14,166 - __main__ - DEBUG - Duplicate groups: {'hl7.fhir.uv.smart-app-launch': ['2.0.0', '2.1.0'], 'hl7.terminology.r4': ['5.0.0', '6.2.0', '6.4.0']}
-2025-08-01 00:48:14,169 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /view-igs HTTP/1.1" 200 -
-2025-08-01 00:48:14,185 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:14,187 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:48:14,188 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:14,189 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:14] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:48:19,052 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /validate-sample HTTP/1.1" 200 -
-2025-08-01 00:48:19,067 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:19,068 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:48:19,069 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:48:19,071 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:48:19] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:50:33,336 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:50:33,337 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:50:33,337 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:50:33,339 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:50:34,754 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:50:34,995 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:50:34,997 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:50:34] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:50:35,010 - services - DEBUG - Received validate-sample request
-2025-08-01 00:50:35,011 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=13970
-2025-08-01 00:50:35,012 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,014 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,017 - services - DEBUG - Validating Bundle against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:50:35,017 - services - DEBUG - Validating bundle against example.fhir.ph.core.r4#0.1.0, include_dependencies=True
-2025-08-01 00:50:35,018 - services - DEBUG - Found 14 local references in the bundle.
-2025-08-01 00:50:35,019 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,021 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient
-2025-08-01 00:50:35,022 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,027 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,028 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient'
-2025-08-01 00:50:35,039 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,040 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' at path: package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:50:35,042 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:50:35,043 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:50:35,046 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:50:35,048 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:50:35,050 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:50:35,052 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:50:35,054 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:50:35,055 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,057 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,059 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter
-2025-08-01 00:50:35,060 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,065 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,066 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter'
-2025-08-01 00:50:35,071 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,073 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' at path: package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:50:35,074 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:50:35,075 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:50:35,077 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:50:35,078 - services - DEBUG - Navigating FHIR path: Encounter.status, extension_url=None
-2025-08-01 00:50:35,079 - services - DEBUG - Navigating FHIR path: Encounter.class, extension_url=None
-2025-08-01 00:50:35,081 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,082 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,083 - services - DEBUG - No profile in resource, using base type as identifier: Condition
-2025-08-01 00:50:35,084 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,088 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,090 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,106 - services - INFO - SD matching identifier 'Condition' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,108 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:50:35,112 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:50:35,113 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:50:35,116 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:50:35,117 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,182 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-Condition.json
-2025-08-01 00:50:35,184 - services - DEBUG - Found SD at package/StructureDefinition-Condition.json
-2025-08-01 00:50:35,185 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:50:35,186 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:50:35,187 - services - DEBUG - Navigating FHIR path: Condition.subject, extension_url=None
-2025-08-01 00:50:35,188 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,190 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,192 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication
-2025-08-01 00:50:35,192 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,196 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,197 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication'
-2025-08-01 00:50:35,204 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,206 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' at path: package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:50:35,207 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:50:35,207 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:50:35,209 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:50:35,210 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,211 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,213 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation
-2025-08-01 00:50:35,214 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,217 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,218 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation'
-2025-08-01 00:50:35,224 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,225 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' at path: package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:50:35,226 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:50:35,227 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:50:35,228 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:50:35,229 - services - DEBUG - Navigating FHIR path: Observation.status, extension_url=None
-2025-08-01 00:50:35,230 - services - DEBUG - Navigating FHIR path: Observation.code, extension_url=None
-2025-08-01 00:50:35,231 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,232 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,233 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:50:35,234 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,237 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,238 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,250 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,252 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:50:35,255 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:50:35,256 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:50:35,259 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:50:35,259 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:50:35,710 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:50:35,711 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:50:35,712 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:50:35,713 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:50:35,713 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:50:35,714 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,715 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:50:35,716 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner
-2025-08-01 00:50:35,716 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,719 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:50:35,719 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner'
-2025-08-01 00:50:35,727 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:50:35,728 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' at path: package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:50:35,729 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:50:35,729 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:50:35,730 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:50:35,731 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,731 - services - DEBUG - Bundle validation result: valid=True, errors=0, warnings=0, resources=7
-2025-08-01 00:50:35,732 - services - INFO - Validation result for Bundle against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:50:35,732 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:50:35] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:51:28,784 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /manual-import-ig HTTP/1.1" 200 -
-2025-08-01 00:51:28,825 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:28,828 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:28,839 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:28] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:51:39,832 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
-2025-08-01 00:51:39,838 - services - DEBUG - Parsed 'example.fhir.ph.core.r4-0.1.0.tgz' -> name='example.fhir.ph.core.r4', version='0.1.0'
-2025-08-01 00:51:39,851 - services - DEBUG - Parsed 'hl7.fhir.au.base-5.1.0-preview.tgz' -> name='hl7.fhir.au.base', version='5.1.0-preview'
-2025-08-01 00:51:39,892 - services - DEBUG - Parsed 'hl7.fhir.au.core-1.1.0-preview.tgz' -> name='hl7.fhir.au.core', version='1.1.0-preview'
-2025-08-01 00:51:39,918 - services - DEBUG - Parsed 'hl7.fhir.r4.core-4.0.1.tgz' -> name='hl7.fhir.r4.core', version='4.0.1'
-2025-08-01 00:51:40,732 - services - DEBUG - Parsed 'hl7.fhir.uv.extensions.r4-5.2.0.tgz' -> name='hl7.fhir.uv.extensions.r4', version='5.2.0'
-2025-08-01 00:51:40,837 - services - DEBUG - Parsed 'hl7.fhir.uv.ipa-1.0.0.tgz' -> name='hl7.fhir.uv.ipa', version='1.0.0'
-2025-08-01 00:51:40,855 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.0.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.0.0'
-2025-08-01 00:51:40,860 - services - DEBUG - Parsed 'hl7.fhir.uv.smart-app-launch-2.1.0.tgz' -> name='hl7.fhir.uv.smart-app-launch', version='2.1.0'
-2025-08-01 00:51:40,868 - services - DEBUG - Parsed 'hl7.terminology.r4-5.0.0.tgz' -> name='hl7.terminology.r4', version='5.0.0'
-2025-08-01 00:51:41,223 - services - DEBUG - Parsed 'hl7.terminology.r4-6.2.0.tgz' -> name='hl7.terminology.r4', version='6.2.0'
-2025-08-01 00:51:41,669 - services - DEBUG - Parsed 'hl7.terminology.r4-6.4.0.tgz' -> name='hl7.terminology.r4', version='6.4.0'
-2025-08-01 00:51:42,069 - __main__ - DEBUG - Found packages: 11
-2025-08-01 00:51:42,070 - __main__ - DEBUG - Errors during package listing: []
-2025-08-01 00:51:42,071 - __main__ - DEBUG - Duplicate groups: {'hl7.fhir.uv.smart-app-launch': ['2.0.0', '2.1.0'], 'hl7.terminology.r4': ['5.0.0', '6.2.0', '6.4.0']}
-2025-08-01 00:51:42,075 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /view-igs HTTP/1.1" 200 -
-2025-08-01 00:51:42,100 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:42,103 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:51:42,108 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:51:42,108 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:51:42] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:54:20,189 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /validate-sample HTTP/1.1" 200 -
-2025-08-01 00:54:20,209 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/css/fire-animation.css HTTP/1.1" 304 -
-2025-08-01 00:54:20,212 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/css/animation.css HTTP/1.1" 304 -
-2025-08-01 00:54:20,216 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/js/htmx.min.js HTTP/1.1" 304 -
-2025-08-01 00:54:20,218 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:20] "GET /static/FHIRFLARE.png HTTP/1.1" 304 -
-2025-08-01 00:54:39,350 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:54:39,351 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:54:39,353 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:54:39,356 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:54:39,413 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:54:39,611 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:54:39,613 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:39] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:54:39,639 - services - DEBUG - Received validate-sample request
-2025-08-01 00:54:39,641 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=13970
-2025-08-01 00:54:39,643 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,647 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,650 - services - DEBUG - Validating Bundle against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:54:39,652 - services - DEBUG - Validating bundle against example.fhir.ph.core.r4#0.1.0, include_dependencies=True
-2025-08-01 00:54:39,653 - services - DEBUG - Found 14 local references in the bundle.
-2025-08-01 00:54:39,655 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,659 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient
-2025-08-01 00:54:39,660 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,668 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,670 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient'
-2025-08-01 00:54:39,688 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,689 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient' at path: package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:54:39,692 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-patient.json
-2025-08-01 00:54:39,693 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:54:39,695 - services - DEBUG - Navigating FHIR path: Patient, extension_url=None
-2025-08-01 00:54:39,697 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:54:39,700 - services - DEBUG - Navigating FHIR path: Patient.extension, extension_url=None
-2025-08-01 00:54:39,702 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:54:39,705 - services - DEBUG - Navigating FHIR path: Patient.identifier, extension_url=None
-2025-08-01 00:54:39,708 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,710 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,714 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter
-2025-08-01 00:54:39,715 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,724 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,725 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter'
-2025-08-01 00:54:39,734 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,736 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter' at path: package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:54:39,739 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-encounter.json
-2025-08-01 00:54:39,740 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:54:39,742 - services - DEBUG - Navigating FHIR path: Encounter, extension_url=None
-2025-08-01 00:54:39,744 - services - DEBUG - Navigating FHIR path: Encounter.status, extension_url=None
-2025-08-01 00:54:39,746 - services - DEBUG - Navigating FHIR path: Encounter.class, extension_url=None
-2025-08-01 00:54:39,747 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,749 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,753 - services - DEBUG - No profile in resource, using base type as identifier: Condition
-2025-08-01 00:54:39,755 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,764 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,766 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:39,791 - services - INFO - SD matching identifier 'Condition' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,794 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:54:39,799 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:54:39,803 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:54:39,808 - services - DEBUG - Searching for SD matching 'Condition' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:54:39,810 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:39,902 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-Condition.json
-2025-08-01 00:54:39,904 - services - DEBUG - Found SD at package/StructureDefinition-Condition.json
-2025-08-01 00:54:39,905 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:54:39,907 - services - DEBUG - Navigating FHIR path: Condition, extension_url=None
-2025-08-01 00:54:39,908 - services - DEBUG - Navigating FHIR path: Condition.subject, extension_url=None
-2025-08-01 00:54:39,910 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,911 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,914 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication
-2025-08-01 00:54:39,915 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,923 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,924 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication'
-2025-08-01 00:54:39,934 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,936 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication' at path: package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:54:39,938 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-medication.json
-2025-08-01 00:54:39,939 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:54:39,940 - services - DEBUG - Navigating FHIR path: Medication, extension_url=None
-2025-08-01 00:54:39,942 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,943 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,945 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation
-2025-08-01 00:54:39,946 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,952 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,953 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation'
-2025-08-01 00:54:39,964 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:39,966 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation' at path: package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:54:39,968 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-observation.json
-2025-08-01 00:54:39,969 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:54:39,970 - services - DEBUG - Navigating FHIR path: Observation, extension_url=None
-2025-08-01 00:54:39,971 - services - DEBUG - Navigating FHIR path: Observation.status, extension_url=None
-2025-08-01 00:54:39,973 - services - DEBUG - Navigating FHIR path: Observation.code, extension_url=None
-2025-08-01 00:54:39,975 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:39,976 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:39,980 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:54:39,981 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,988 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:39,990 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:40,015 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:40,017 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:54:40,022 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:54:40,024 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:54:40,028 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:54:40,029 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:54:41,057 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:54:41,059 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:54:41,060 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:54:41,061 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:54:41,063 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:54:41,065 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:41,066 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:54:41,070 - services - DEBUG - Using provided profile: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner. Cleaned to: urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner
-2025-08-01 00:54:41,071 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:41,077 - services - DEBUG - Searching for SD matching 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' with profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:54:41,078 - services - DEBUG - Cleaned profile URL for search: 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner'
-2025-08-01 00:54:41,096 - services - DEBUG - Removing narrative text from resource: StructureDefinition
-2025-08-01 00:54:41,098 - services - INFO - Found definitive SD matching profile 'urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner' at path: package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:54:41,100 - services - DEBUG - Found SD at package/StructureDefinition-ph-core-practitioner.json
-2025-08-01 00:54:41,101 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:54:41,103 - services - DEBUG - Navigating FHIR path: Practitioner, extension_url=None
-2025-08-01 00:54:41,105 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:54:41,106 - services - DEBUG - Bundle validation result: valid=True, errors=0, warnings=0, resources=7
-2025-08-01 00:54:41,107 - services - INFO - Validation result for Bundle against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:54:41,109 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:54:41] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:55:46,274 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:55:46,275 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:55:46,276 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:55:46,278 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:55:46,303 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:55:46,409 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:55:46,411 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:55:46] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:55:46,425 - services - DEBUG - Received validate-sample request
-2025-08-01 00:55:46,427 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:55:46,428 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:55:46,431 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,434 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:55:46,435 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:55:46,438 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:55:46,439 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,445 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,446 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:55:46,468 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:55:46,470 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:55:46,475 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:55:46,477 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:55:46,481 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:55:46,482 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:55:47,472 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:55:47,474 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:55:47,474 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:55:47,476 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:55:47,477 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:55:47,479 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:55:47,480 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:55:47,481 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:55:47] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:56:01,610 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:56:01,611 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:56:01,612 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:56:01,614 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:56:01,634 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:56:01,712 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:56:01,714 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:01] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:56:01,726 - services - DEBUG - Received validate-sample request
-2025-08-01 00:56:01,727 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:56:01,728 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:01,731 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,733 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:56:01,735 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:01,738 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:56:01,739 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,743 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,744 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:01,759 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:01,761 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:56:01,764 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:56:01,766 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:56:01,770 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:56:01,771 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:02,425 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:02,427 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:02,428 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:02,430 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:02,431 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:56:02,433 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:56:02,434 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:56:02,435 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:02] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:56:14,054 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:56:14,055 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:56:14,056 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:56:14,057 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:56:14,070 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:56:14,147 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:56:14,149 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:14] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:56:14,157 - services - DEBUG - Received validate-sample request
-2025-08-01 00:56:14,158 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:56:14,160 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:14,163 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,166 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:56:14,166 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:14,170 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:56:14,172 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,177 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,178 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:14,193 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:14,195 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:56:14,197 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:56:14,198 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:56:14,201 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:56:14,202 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:14,875 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:14,877 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:14,878 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:14,879 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:14,881 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:56:14,883 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:56:14,884 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:56:14,885 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:14] "POST /api/validate-sample HTTP/1.1" 200 -
-2025-08-01 00:56:18,236 - __main__ - DEBUG - Proxy received request for path: '/fhir/metadata', cleaned subpath: 'metadata'
-2025-08-01 00:56:18,237 - __main__ - DEBUG - No target header found, proxying to default local HAPI: http://localhost:8080/fhir
-2025-08-01 00:56:18,238 - __main__ - INFO - Proxying request: GET http://localhost:8080/fhir/metadata
-2025-08-01 00:56:18,239 - urllib3.connectionpool - DEBUG - Starting new HTTP connection (1): localhost:8080
-2025-08-01 00:56:18,257 - urllib3.connectionpool - DEBUG - http://localhost:8080 "GET /fhir/metadata HTTP/1.1" 200 None
-2025-08-01 00:56:18,348 - __main__ - INFO - Target server 'http://localhost:8080/fhir' responded with status: 200
-2025-08-01 00:56:18,350 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:18] "GET /fhir/metadata HTTP/1.1" 200 -
-2025-08-01 00:56:18,364 - services - DEBUG - Received validate-sample request
-2025-08-01 00:56:18,366 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
-2025-08-01 00:56:18,366 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:18,369 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,373 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
-2025-08-01 00:56:18,374 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
-2025-08-01 00:56:18,377 - services - DEBUG - No profile in resource, using base type as identifier: AllergyIntolerance
-2025-08-01 00:56:18,378 - services - DEBUG - Checking for package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,383 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,384 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:18,401 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
-2025-08-01 00:56:18,403 - services - DEBUG - SD not found in example.fhir.ph.core.r4#0.1.0. Checking dependencies.
-2025-08-01 00:56:18,406 - services - DEBUG - Found dependencies: {'hl7.fhir.r4.core': '4.0.1', 'hl7.terminology.r4': '6.4.0', 'hl7.fhir.uv.extensions.r4': '5.2.0'}
-2025-08-01 00:56:18,408 - services - DEBUG - Searching SD in dependency hl7.fhir.r4.core#4.0.1
-2025-08-01 00:56:18,412 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in hl7.fhir.r4.core-4.0.1.tgz
-2025-08-01 00:56:18,413 - services - DEBUG - Cleaned profile URL for search: 'None'
-2025-08-01 00:56:19,183 - services - INFO - Found SD in dependency hl7.fhir.r4.core#4.0.1 at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:19,184 - services - DEBUG - Found SD at package/StructureDefinition-AllergyIntolerance.json
-2025-08-01 00:56:19,185 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:19,186 - services - DEBUG - Navigating FHIR path: AllergyIntolerance, extension_url=None
-2025-08-01 00:56:19,187 - services - DEBUG - Navigating FHIR path: AllergyIntolerance.patient, extension_url=None
-2025-08-01 00:56:19,189 - services - DEBUG - Validation result: valid=True, errors=0, warnings=0
-2025-08-01 00:56:19,190 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=True, errors=0, warnings=0
-2025-08-01 00:56:19,191 - werkzeug - INFO - 172.18.0.1 - - [01/Aug/2025 00:56:19] "POST /api/validate-sample HTTP/1.1" 200 -

logs/supervisord.log

@@ -1,6 +0,0 @@
-2025-08-01 00:44:37,751 CRIT Supervisor is running as root.  Privileges were not dropped because no user is specified in the config file.  If you intend to run as root, you can set user=root in the config file to avoid this message.
-2025-08-01 00:44:37,755 INFO supervisord started with pid 1
-2025-08-01 00:44:38,762 INFO spawned: 'flask' with pid 8
-2025-08-01 00:44:38,767 INFO spawned: 'tomcat' with pid 9
-2025-08-01 00:44:49,750 INFO success: flask entered RUNNING state, process has stayed up for > than 10 seconds (startsecs)
-2025-08-01 00:45:08,829 INFO success: tomcat entered RUNNING state, process has stayed up for > than 30 seconds (startsecs)

logs/supervisord.pid

@@ -1 +0,0 @@
-1

logs/tomcat.log

@@ -1,184 +0,0 @@
-
-  .   ____          _            __ _ _
- /\\ / ___'_ __ _ _(_)_ __  __ _ \ \ \ \
-( ( )\___ | '_ | '_| | '_ \/ _` | \ \ \ \
- \\/  ___)| |_)| | | | | || (_| |  ) ) ) )
-  '  |____| .__|_| |_|_| |_\__, | / / / /
- =========|_|==============|___/=/_/_/_/
-
- :: Spring Boot ::               (v3.3.11)
-
-2025-08-01T00:44:50.113Z  INFO 9 --- [           main] ca.uhn.fhir.jpa.starter.Application      : Starting Application using Java 17.0.15 with PID 9 (/usr/local/tomcat/webapps/ROOT/WEB-INF/classes started by root in /usr/local/tomcat)
-2025-08-01T00:44:50.117Z  INFO 9 --- [           main] ca.uhn.fhir.jpa.starter.Application      : No active profile set, falling back to 1 default profile: "default"
-2025-08-01T00:44:51.730Z  INFO 9 --- [           main] .s.d.r.c.RepositoryConfigurationDelegate : Bootstrapping Spring Data JPA repositories in DEFAULT mode.
-2025-08-01T00:44:52.051Z  INFO 9 --- [           main] .s.d.r.c.RepositoryConfigurationDelegate : Finished Spring Data repository scanning in 305 ms. Found 53 JPA repository interfaces.
-2025-08-01T00:44:54.276Z  WARN 9 --- [           main] trationDelegate$BeanPostProcessorChecker : Bean 'ca.uhn.fhir.jpa.config.BeanPostProcessorConfig' of type [ca.uhn.fhir.jpa.config.BeanPostProcessorConfig$$SpringCGLIB$$0] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying). The currently created BeanPostProcessor [persistenceExceptionTranslationPostProcessor] is declared through a non-static factory method on that class; consider declaring it as static instead.
-2025-08-01T00:44:54.434Z  INFO 9 --- [           main] w.s.c.ServletWebServerApplicationContext : Root WebApplicationContext: initialization completed in 4281 ms
-2025-08-01T00:44:54.614Z  INFO 9 --- [           main] ca.uhn.fhir.util.VersionUtil             : HAPI FHIR version 8.2.0 - Rev 8a44e1058f
-2025-08-01T00:44:54.623Z  INFO 9 --- [           main] ca.uhn.fhir.context.FhirContext          : Creating new FHIR context for FHIR version [R4]
-2025-08-01T00:44:54.682Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to allow contains searches
-2025-08-01T00:44:54.682Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to deny multiple deletes
-2025-08-01T00:44:54.682Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to deny external references
-2025-08-01T00:44:54.683Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to enable DAO scheduling
-2025-08-01T00:44:54.683Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to disable delete expunges
-2025-08-01T00:44:54.683Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to enable expunges
-2025-08-01T00:44:54.683Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to allow overriding default search params
-2025-08-01T00:44:54.684Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to disable auto-creating placeholder references
-2025-08-01T00:44:54.684Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to auto-version references at paths []
-2025-08-01T00:44:54.684Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to enable value set pre-expansion
-2025-08-01T00:44:54.685Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to enable value set pre-expansion task
-2025-08-01T00:44:54.685Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured for pre-expand value set default count of 1000
-2025-08-01T00:44:54.685Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured for pre-expand value set max count of 1000
-2025-08-01T00:44:54.685Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured for maximum expansion size of 1000
-2025-08-01T00:44:54.717Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to have a maximum fetch size of 'unlimited'
-2025-08-01T00:44:54.717Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to cache search results for 60000 milliseconds
-2025-08-01T00:44:54.717Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Server configured to use 'ALPHANUMERIC' Client ID Strategy
-2025-08-01T00:44:54.758Z  INFO 9 --- [           main] c.u.f.j.s.common.FhirServerConfigCommon  : Partitioning is not enabled on this server
-2025-08-01T00:44:54.852Z  INFO 9 --- [           main] o.hibernate.jpa.internal.util.LogHelper  : HHH000204: Processing PersistenceUnitInfo [name: HAPI_PU]
-2025-08-01T00:44:54.986Z  INFO 9 --- [           main] org.hibernate.Version                    : HHH000412: Hibernate ORM core version 6.6.4.Final
-2025-08-01T00:44:55.001Z  INFO 9 --- [           main] .f.j.l.FilteringSqlLoggerImplContributor : Adding service: SqlStatementFilteringLogger
-2025-08-01T00:44:55.060Z  INFO 9 --- [           main] o.h.c.internal.RegionFactoryInitiator    : HHH000026: Second-level cache disabled
-2025-08-01T00:44:55.247Z  INFO 9 --- [           main] o.h.e.boot.internal.EnversServiceImpl    : Envers integration enabled? : true
-2025-08-01T00:44:55.586Z  INFO 9 --- [           main] o.s.o.j.p.SpringPersistenceUnitInfo      : No LoadTimeWeaver setup: ignoring JPA class transformer
-2025-08-01T00:44:55.628Z  INFO 9 --- [           main] com.zaxxer.hikari.HikariDataSource       : HikariPool-1 - Starting...
-2025-08-01T00:44:59.687Z  INFO 9 --- [           main] com.zaxxer.hikari.pool.HikariPool        : HikariPool-1 - Added connection conn1: url=jdbc:h2:file:/app/h2-data/fhir user=SA
-2025-08-01T00:44:59.691Z  INFO 9 --- [           main] com.zaxxer.hikari.HikariDataSource       : HikariPool-1 - Start completed.
-2025-08-01T00:44:59.756Z  INFO 9 --- [           main] org.hibernate.orm.connections.pooling    : HHH10001005: Database info:
-	Database JDBC URL [Connecting through datasource 'HikariDataSource (HikariPool-1)']
-	Database driver: undefined/unknown
-	Database version: 2.3.232
-	Autocommit mode: undefined/unknown
-	Isolation level: undefined/unknown
-	Minimum pool size: undefined/unknown
-	Maximum pool size: undefined/unknown
-2025-08-01T00:45:01.900Z  INFO 9 --- [           main] b.i.HibernateSearchPreIntegrationService : HSEARCH000034: Hibernate Search version 7.2.1.Final
-2025-08-01T00:45:02.062Z  INFO 9 --- [           main] o.h.e.c.i.m.AuditMetadataGenerator       : Adding properties for entity: ca.uhn.fhir.jpa.entity.MdmLink
-2025-08-01T00:45:04.735Z  INFO 9 --- [           main] o.h.e.t.j.p.i.JtaPlatformInitiator       : HHH000489: No JTA platform available (set 'hibernate.transaction.jta.platform' to enable JTA platform integration)
-2025-08-01T00:45:06.640Z  INFO 9 --- [           main] irLocalContainerEntityManagerFactoryBean : Initialized JPA EntityManagerFactory for persistence unit 'HAPI_PU'
-2025-08-01T00:45:07.684Z  INFO 9 --- [           main] .u.f.c.s.DefaultProfileValidationSupport : Loading structure definitions from classpath: /org/hl7/fhir/r4/model/profile/profiles-resources.xml
-2025-08-01T00:45:07.705Z  INFO 9 --- [           main] ca.uhn.fhir.util.XmlUtil                 : FHIR XML procesing will use StAX implementation 'Woodstox' version '6.4.0'
-2025-08-01T00:45:08.736Z  INFO 9 --- [           main] .u.f.c.s.DefaultProfileValidationSupport : Loading structure definitions from classpath: /org/hl7/fhir/r4/model/profile/profiles-types.xml
-2025-08-01T00:45:08.828Z  INFO 9 --- [           main] .u.f.c.s.DefaultProfileValidationSupport : Loading structure definitions from classpath: /org/hl7/fhir/r4/model/profile/profiles-others.xml
-2025-08-01T00:45:09.260Z  INFO 9 --- [           main] .u.f.c.s.DefaultProfileValidationSupport : Loading structure definitions from classpath: /org/hl7/fhir/r4/model/extension/extension-definitions.xml
-2025-08-01T00:45:10.281Z  INFO 9 --- [           main] o.s.d.j.r.query.QueryEnhancerFactory     : Hibernate is in classpath; If applicable, HQL parser will be used.
-2025-08-01T00:45:14.625Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Creating Local Scheduler
-2025-08-01T00:45:14.674Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Using default implementation for ThreadExecutor
-2025-08-01T00:45:14.693Z  INFO 9 --- [           main] org.quartz.core.SchedulerSignalerImpl    : Initialized Scheduler Signaller of type: class org.quartz.core.SchedulerSignalerImpl
-2025-08-01T00:45:14.693Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Quartz Scheduler v.2.3.2 created.
-2025-08-01T00:45:14.694Z  INFO 9 --- [           main] org.quartz.simpl.RAMJobStore             : RAMJobStore initialized.
-2025-08-01T00:45:14.695Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler meta-data: Quartz Scheduler (v2.3.2) 'hapi-fhir-jpa-scheduler' with instanceId 'NON_CLUSTERED'
-  Scheduler class: 'org.quartz.core.QuartzScheduler' - running locally.
-  NOT STARTED.
-  Currently in standby mode.
-  Number of jobs executed: 0
-  Using thread pool 'org.quartz.simpl.SimpleThreadPool' - with 4 threads.
-  Using job-store 'org.quartz.simpl.RAMJobStore' - which does not support persistence. and is not clustered.
-
-2025-08-01T00:45:14.695Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Quartz scheduler 'hapi-fhir-jpa-scheduler' initialized from an externally provided properties instance.
-2025-08-01T00:45:14.695Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Quartz scheduler version: 2.3.2
-2025-08-01T00:45:14.696Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : JobFactory set to: ca.uhn.fhir.jpa.sched.AutowiringSpringBeanJobFactory@f7fb17c
-2025-08-01T00:45:14.696Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler hapi-fhir-jpa-scheduler_$_NON_CLUSTERED paused.
-2025-08-01T00:45:14.696Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Creating Clustered Scheduler
-2025-08-01T00:45:14.697Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Using default implementation for ThreadExecutor
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.core.SchedulerSignalerImpl    : Initialized Scheduler Signaller of type: class org.quartz.core.SchedulerSignalerImpl
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Quartz Scheduler v.2.3.2 created.
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.simpl.RAMJobStore             : RAMJobStore initialized.
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler meta-data: Quartz Scheduler (v2.3.2) 'hapi-fhir-jpa-scheduler' with instanceId 'NON_CLUSTERED'
-  Scheduler class: 'org.quartz.core.QuartzScheduler' - running locally.
-  NOT STARTED.
-  Currently in standby mode.
-  Number of jobs executed: 0
-  Using thread pool 'org.quartz.simpl.SimpleThreadPool' - with 4 threads.
-  Using job-store 'org.quartz.simpl.RAMJobStore' - which does not support persistence. and is not clustered.
-
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Quartz scheduler 'hapi-fhir-jpa-scheduler' initialized from an externally provided properties instance.
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Quartz scheduler version: 2.3.2
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : JobFactory set to: ca.uhn.fhir.jpa.sched.AutowiringSpringBeanJobFactory@f7fb17c
-2025-08-01T00:45:14.699Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler hapi-fhir-jpa-scheduler_$_NON_CLUSTERED paused.
-2025-08-01T00:45:15.168Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618
-2025-08-01T00:45:15.169Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618 succeeded in 1ms
-2025-08-01T00:45:15.177Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618
-2025-08-01T00:45:15.178Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618 succeeded in 1ms
-2025-08-01T00:45:15.179Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618
-2025-08-01T00:45:15.179Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618 succeeded in 0ms
-2025-08-01T00:45:15.180Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618
-2025-08-01T00:45:15.180Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618 succeeded in 0ms
-2025-08-01T00:45:15.181Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618
-2025-08-01T00:45:15.181Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618 succeeded in 0ms
-2025-08-01T00:45:15.182Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618
-2025-08-01T00:45:15.182Z  INFO 9 --- [           main] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@4d737618 succeeded in 0ms
-2025-08-01T00:45:15.255Z  INFO 9 --- [           main] ca.uhn.fhir.context.FhirContext          : Creating new FHIR context for FHIR version [R4]
-2025-08-01T00:45:15.531Z  INFO 9 --- [           main] c.u.f.j.starter.common.StarterJpaConfig  : CORS is enabled on this server
-2025-08-01T00:45:15.533Z  INFO 9 --- [           main] c.u.f.j.starter.common.StarterJpaConfig  : CORS allows the following origins: *
-2025-08-01T00:45:15.562Z  INFO 9 --- [           main] ca.uhn.fhir.context.FhirContext          : Creating new FHIR context for FHIR version [R5]
-2025-08-01T00:45:20.832Z  INFO 9 --- [           main] ca.uhn.fhir.context.FhirContext          : Creating new FHIR context for FHIR version [R4]
-2025-08-01T00:45:21.725Z  WARN 9 --- [           main] JpaBaseConfiguration$JpaWebConfiguration : spring.jpa.open-in-view is enabled by default. Therefore, database queries may be performed during view rendering. Explicitly configure spring.jpa.open-in-view to disable this warning
-2025-08-01T00:45:22.254Z  INFO 9 --- [           main] .s.i.SubscriptionSubmitInterceptorLoader : Subscriptions are disabled on this server.  Subscriptions will not be activated and incoming resources will not be matched against subscriptions.
-2025-08-01T00:45:22.925Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Using default implementation for ThreadExecutor
-2025-08-01T00:45:22.930Z  INFO 9 --- [           main] org.quartz.core.SchedulerSignalerImpl    : Initialized Scheduler Signaller of type: class org.quartz.core.SchedulerSignalerImpl
-2025-08-01T00:45:22.931Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Quartz Scheduler v.2.3.2 created.
-2025-08-01T00:45:22.931Z  INFO 9 --- [           main] org.quartz.simpl.RAMJobStore             : RAMJobStore initialized.
-2025-08-01T00:45:22.931Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler meta-data: Quartz Scheduler (v2.3.2) 'quartzScheduler' with instanceId 'NON_CLUSTERED'
-  Scheduler class: 'org.quartz.core.QuartzScheduler' - running locally.
-  NOT STARTED.
-  Currently in standby mode.
-  Number of jobs executed: 0
-  Using thread pool 'org.quartz.simpl.SimpleThreadPool' - with 10 threads.
-  Using job-store 'org.quartz.simpl.RAMJobStore' - which does not support persistence. and is not clustered.
-
-2025-08-01T00:45:22.931Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Quartz scheduler 'quartzScheduler' initialized from an externally provided properties instance.
-2025-08-01T00:45:22.931Z  INFO 9 --- [           main] org.quartz.impl.StdSchedulerFactory      : Quartz scheduler version: 2.3.2
-2025-08-01T00:45:22.931Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : JobFactory set to: org.springframework.scheduling.quartz.SpringBeanJobFactory@48e64e95
-2025-08-01T00:45:22.968Z  INFO 9 --- [           main] o.s.b.a.e.web.EndpointLinksResolver      : Exposing 1 endpoint beneath base path '/actuator'
-2025-08-01T00:45:23.183Z  INFO 9 --- [           main] o.s.s.quartz.SchedulerFactoryBean        : Starting Quartz Scheduler now
-2025-08-01T00:45:23.183Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler quartzScheduler_$_NON_CLUSTERED started.
-2025-08-01T00:45:23.189Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: BULK_IMPORT_PULL / 1
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: BULK_IMPORT_PULL / 2
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: REINDEX / 1
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: REINDEX / 2
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: DELETE_EXPUNGE / 1
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: BULK_EXPORT / 1
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: BULK_EXPORT / 2
-2025-08-01T00:45:23.191Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: termCodeSystemVersionDeleteJob / 1
-2025-08-01T00:45:23.192Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: termCodeSystemDeleteJob / 1
-2025-08-01T00:45:23.192Z  INFO 9 --- [           main] ca.uhn.fhir.log.batch_troubleshooting    : Registering Batch2 Job Definition: bulkImportJob / 1
-2025-08-01T00:45:23.194Z  INFO 9 --- [           main] .j.s.m.m.s.MatchingQueueSubscriberLoader : Subscription Matching Subscriber subscribed to Matching Channel ca.uhn.fhir.jpa.subscription.channel.subscription.BroadcastingSubscribableChannelWrapper with name subscription-matching
-2025-08-01T00:45:24.054Z  INFO 9 --- [           main] c.u.f.j.s.registry.JpaSearchParamCache   : Have 0 unique search params
-2025-08-01T00:45:24.148Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling 15 jobs in application
-2025-08-01T00:45:24.150Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling local job ca.uhn.fhir.jpa.term.TermDeferredStorageSvcImpl$Job with interval 5000ms
-2025-08-01T00:45:24.156Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling local job ca.uhn.fhir.jpa.cache.ResourceChangeListenerCacheRefresherImpl with interval 00:00:10.000
-2025-08-01T00:45:24.158Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.search.reindex.ResourceReindexingSvcImpl with interval 00:00:10.000
-2025-08-01T00:45:24.159Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.bulk.export.svc.BulkDataExportJobSchedulingHelperImpl$PurgeExpiredFilesJob with interval 01:00:00
-2025-08-01T00:45:24.161Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling local job ca.uhn.fhir.jpa.bulk.imprt.svc.BulkDataImportSvcImpl$ActivationJob with interval 00:00:10.000
-2025-08-01T00:45:24.162Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.search.warm.CacheWarmingSvcImpl with interval 00:00:10.000
-2025-08-01T00:45:24.163Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.term.TermReadSvcImpl with interval 00:10:00
-2025-08-01T00:45:24.165Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling local job ca.uhn.fhir.jpa.term.TermReindexingSvcImpl with interval 00:01:00.000
-2025-08-01T00:45:24.166Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.search.SearchUrlJobMaintenanceSvcImpl$SearchUrlMaintenanceJob with interval 00:10:00
-2025-08-01T00:45:24.166Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.search.StaleSearchDeletingSvcImpl with interval 00:01:00.000
-2025-08-01T00:45:24.167Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling local job ca.uhn.fhir.jpa.util.ResourceCountCache with interval 00:10:00
-2025-08-01T00:45:24.168Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling local job ca.uhn.fhir.jpa.subscription.triggering.SubscriptionTriggeringSvcImpl with interval 5000ms
-2025-08-01T00:45:24.168Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.jpa.subscription.async.AsyncResourceModifiedProcessingSchedulerSvc with interval 5000ms
-2025-08-01T00:45:24.168Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.batch2.coordinator.ReductionStepExecutorServiceImpl$ReductionStepExecutorScheduledJob with interval 00:00:10.000
-2025-08-01T00:45:24.169Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Scheduling clustered job ca.uhn.fhir.batch2.maintenance.JobMaintenanceServiceImpl$JobMaintenanceScheduledJob with interval 00:01:00.000
-2025-08-01T00:45:24.169Z  INFO 9 --- [           main] c.u.f.j.sched.BaseSchedulerServiceImpl   : Starting task schedulers for context application
-2025-08-01T00:45:24.169Z  INFO 9 --- [           main] c.uhn.fhir.jpa.sched.BaseHapiScheduler   : Starting scheduler hapi-fhir-jpa-scheduler-local
-2025-08-01T00:45:24.169Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler hapi-fhir-jpa-scheduler_$_NON_CLUSTERED started.
-2025-08-01T00:45:24.169Z  INFO 9 --- [           main] c.uhn.fhir.jpa.sched.BaseHapiScheduler   : Starting scheduler hapi-fhir-jpa-scheduler-clustered
-2025-08-01T00:45:24.170Z  INFO 9 --- [           main] org.quartz.core.QuartzScheduler          : Scheduler hapi-fhir-jpa-scheduler_$_NON_CLUSTERED started.
-2025-08-01T00:45:24.194Z  INFO 9 --- [           main] ca.uhn.fhir.jpa.starter.Application      : Started Application in 34.72 seconds (process running for 45.415)
-2025-08-01T00:45:24.208Z  INFO 9 --- [ler-clustered-2] .s.BulkDataExportJobSchedulingHelperImpl : Finished bulk export job deletion with nothing to do
-2025-08-01T00:45:24.260Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : Initializing HAPI FHIR restful server running in R4 mode
-2025-08-01T00:45:24.261Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : Added 147 resource provider(s). Total 147
-2025-08-01T00:45:24.710Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : Added 5 plain provider(s). Total 5
-2025-08-01T00:45:24.717Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : Removing RESTful methods for: class ca.uhn.fhir.jpa.provider.JpaCapabilityStatementProvider
-2025-08-01T00:45:24.718Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : OperationDefinition binding of ca.uhn.fhir.rest.server.method.ReadMethodBinding@2091d0e3 was removed
-2025-08-01T00:45:24.719Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : OperationDefinition binding of ca.uhn.fhir.rest.server.method.ReadMethodBinding@5221dfd5 was removed
-2025-08-01T00:45:24.762Z  INFO 9 --- [           main] ca.uhn.fhir.rest.server.RestfulServer    : A FHIR has been lit on this server
-2025-08-01T00:50:33.549Z  INFO 9 --- [nio-8080-exec-1] c.u.f.log.terminology_troubleshooting    : Performing initial retrieval for non-expiring cache: org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@3e87800e
-2025-08-01T00:50:33.963Z  INFO 9 --- [nio-8080-exec-1] c.u.f.log.terminology_troubleshooting    : Initial retrieval for non-expiring cache org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain$FetchAllKey@3e87800e succeeded in 414ms
-2025-08-01T00:50:35.020Z  INFO 9 --- [nio-8080-exec-1] fhirtest.access                          : Path[/fhir] Source[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[]
-2025-08-01T00:54:39.611Z  INFO 9 --- [nio-8080-exec-2] fhirtest.access                          : Path[/fhir] Source[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[]
-2025-08-01T00:55:46.409Z  INFO 9 --- [nio-8080-exec-4] fhirtest.access                          : Path[/fhir] Source[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[]
-2025-08-01T00:56:01.712Z  INFO 9 --- [nio-8080-exec-6] fhirtest.access                          : Path[/fhir] Source[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[]
-2025-08-01T00:56:14.147Z  INFO 9 --- [nio-8080-exec-8] fhirtest.access                          : Path[/fhir] Source[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[]
-2025-08-01T00:56:18.348Z  INFO 9 --- [io-8080-exec-10] fhirtest.access                          : Path[/fhir] Source[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[] Operation[metadata  ] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/138.0.0.0 Safari/537.36 Edg/138.0.0.0] Params[] ResponseEncoding[]

logs/tomcat_err.log

@@ -1,41 +0,0 @@
-01-Aug-2025 00:44:39.175 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name:   Apache Tomcat/10.1.43
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built:          Jul 1 2025 21:30:20 UTC
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 10.1.43.0
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name:               Linux
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version:            5.15.167.4-microsoft-standard-WSL2
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture:          amd64
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home:             /opt/java/openjdk
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version:           17.0.15+6
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor:            Eclipse Adoptium
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE:         /usr/local/tomcat
-01-Aug-2025 00:44:39.178 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME:         /usr/local/tomcat
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/usr/local/tomcat/conf/logging.properties
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dsun.io.useCanonCaches=false
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang=ALL-UNNAMED
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.lang.reflect=ALL-UNNAMED
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.io=ALL-UNNAMED
-01-Aug-2025 00:44:39.188 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.util=ALL-UNNAMED
-01-Aug-2025 00:44:39.189 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.base/java.util.concurrent=ALL-UNNAMED
-01-Aug-2025 00:44:39.189 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: --add-opens=java.rmi/sun.rmi.transport=ALL-UNNAMED
-01-Aug-2025 00:44:39.189 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/usr/local/tomcat
-01-Aug-2025 00:44:39.189 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/usr/local/tomcat
-01-Aug-2025 00:44:39.189 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/usr/local/tomcat/temp
-01-Aug-2025 00:44:39.192 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent Loaded Apache Tomcat Native library [2.0.9] using APR version [1.7.2].
-01-Aug-2025 00:44:39.194 INFO [main] org.apache.catalina.core.AprLifecycleListener.initializeSSL OpenSSL successfully initialized [OpenSSL 3.0.13 30 Jan 2024]
-01-Aug-2025 00:44:39.445 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
-01-Aug-2025 00:44:39.465 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [475] milliseconds
-01-Aug-2025 00:44:39.519 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
-01-Aug-2025 00:44:39.519 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/10.1.43]
-01-Aug-2025 00:44:39.544 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [/usr/local/tomcat/webapps/ROOT.war]
-01-Aug-2025 00:44:48.747 INFO [main] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
-01-Aug-2025 00:45:24.787 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [/usr/local/tomcat/webapps/ROOT.war] has finished in [45,243] ms
-01-Aug-2025 00:45:24.788 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/custom]
-01-Aug-2025 00:45:24.812 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/usr/local/tomcat/webapps/custom] has finished in [24] ms
-01-Aug-2025 00:45:24.813 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/app]
-01-Aug-2025 00:45:24.829 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/usr/local/tomcat/webapps/app] has finished in [15] ms
-01-Aug-2025 00:45:24.834 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"]
-01-Aug-2025 00:45:24.865 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [45402] milliseconds

requirements.txt

@@ -11,4 +11,4 @@ Flask-Migrate==4.1.0
 cachetools
 beautifulsoup4
 feedparser==6.0.11
-flasgger
+flasgger

setup_linux.sh

@@ -1,18 +1,21 @@
 #!/bin/bash
 
 # --- Configuration ---
-REPO_URL="https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git"
-CLONE_DIR="hapi-fhir-jpaserver"
-SOURCE_CONFIG_DIR="hapi-fhir-Setup" # Assuming this is relative to the script's parent
+REPO_URL_HAPI="https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git"
+REPO_URL_CANDLE="https://github.com/FHIR/fhir-candle.git"
+CLONE_DIR_HAPI="hapi-fhir-jpaserver"
+CLONE_DIR_CANDLE="fhir-candle"
+SOURCE_CONFIG_DIR="hapi-fhir-Setup"
 CONFIG_FILE="application.yaml"
 
 # --- Define Paths ---
-# Note: Adjust SOURCE_CONFIG_PATH if SOURCE_CONFIG_DIR is not a sibling directory
-# This assumes the script is run from a directory, and hapi-fhir-setup is at the same level
 SOURCE_CONFIG_PATH="../${SOURCE_CONFIG_DIR}/target/classes/${CONFIG_FILE}"
-DEST_CONFIG_PATH="${CLONE_DIR}/target/classes/${CONFIG_FILE}"
+DEST_CONFIG_PATH="${CLONE_DIR_HAPI}/target/classes/${CONFIG_FILE}"
 
 APP_MODE=""
+CUSTOM_FHIR_URL_VAL=""
+SERVER_TYPE=""
+CANDLE_FHIR_VERSION=""
 
 # --- Error Handling Function ---
 handle_error() {
@@ -20,25 +23,39 @@ handle_error() {
     echo "An error occurred: $1"
     echo "Script aborted."
     echo "------------------------------------"
-    # Removed 'read -p "Press Enter to exit..."' as it's not typical for non-interactive CI/CD
     exit 1
 }
 
-# === Prompt for Installation Mode ===
+# === MODIFIED: Prompt for Installation Mode ===
 get_mode_choice() {
+    echo ""
     echo "Select Installation Mode:"
-    echo "1. Standalone (Includes local HAPI FHIR Server - Requires Git & Maven)"
-    echo "2. Lite (Excludes local HAPI FHIR Server - No Git/Maven needed)"
+    echo "1. Lite (Excludes local HAPI FHIR Server - No Git/Maven/Dotnet needed)"
+    echo "2. Custom URL (Uses a custom FHIR Server - No Git/Maven/Dotnet needed)"
+    echo "3. Hapi (Includes local HAPI FHIR Server - Requires Git & Maven)"
+    echo "4. Candle (Includes local FHIR Candle Server - Requires Git & Dotnet)"
 
     while true; do
-        read -r -p "Enter your choice (1 or 2): " choice
+        read -r -p "Enter your choice (1, 2, 3, or 4): " choice
         case "$choice" in
             1)
-                APP_MODE="standalone"
+                APP_MODE="lite"
                 break
                 ;;
             2)
-                APP_MODE="lite"
+                APP_MODE="standalone"
+                get_custom_url_prompt
+                break
+                ;;
+            3)
+                APP_MODE="standalone"
+                SERVER_TYPE="hapi"
+                break
+                ;;
+            4)
+                APP_MODE="standalone"
+                SERVER_TYPE="candle"
+                get_candle_fhir_version
                 break
                 ;;
             *)
@@ -47,156 +64,301 @@ get_mode_choice() {
         esac
     done
     echo "Selected Mode: $APP_MODE"
+    echo "Server Type: $SERVER_TYPE"
     echo
 }
 
+# === NEW: Prompt for Custom URL ===
+get_custom_url_prompt() {
+    local confirmed_url=""
+    while true; do
+        echo
+        read -r -p "Please enter the custom FHIR server URL: " custom_url_input
+        echo
+        echo "You entered: $custom_url_input"
+        read -r -p "Is this URL correct? (Y/N): " confirm_url
+        if [[ "$confirm_url" =~ ^[Yy]$ ]]; then
+            confirmed_url="$custom_url_input"
+            break
+        else
+            echo "URL not confirmed. Please re-enter."
+        fi
+    done
+
+    while true; do
+        echo
+        read -r -p "Please re-enter the URL to confirm it is correct: " custom_url_input
+        if [ "$custom_url_input" = "$confirmed_url" ]; then
+            CUSTOM_FHIR_URL_VAL="$custom_url_input"
+            echo
+            echo "Custom URL confirmed: $CUSTOM_FHIR_URL_VAL"
+            break
+        else
+            echo
+            echo "URLs do not match. Please try again."
+            confirmed_url="$custom_url_input"
+        fi
+    done
+}
+
+# === NEW: Prompt for Candle FHIR version ===
+get_candle_fhir_version() {
+    echo ""
+    echo "Select the FHIR version for the Candle server:"
+    echo "1. R4 (4.0)"
+    echo "2. R4B (4.3)"
+    echo "3. R5 (5.0)"
+    while true; do
+        read -r -p "Enter your choice (1, 2, or 3): " choice
+        case "$choice" in
+            1)
+                CANDLE_FHIR_VERSION=r4
+                break
+                ;;
+            2)
+                CANDLE_FHIR_VERSION=r4b
+                break
+                ;;
+            3)
+                CANDLE_FHIR_VERSION=r5
+                break
+                ;;
+            *)
+                echo "Invalid input. Please try again."
+                ;;
+        esac
+    done
+}
+
+
 # Call the function to get mode choice
 get_mode_choice
 
-# === Conditionally Execute HAPI Setup ===
-if [ "$APP_MODE" = "standalone" ]; then
-    echo "Running Standalone setup including HAPI FHIR..."
-    echo
+# === Conditionally Execute Server Setup ===
+case "$SERVER_TYPE" in
+    "hapi")
+        echo "Running Hapi server setup..."
+        echo
 
-    # --- Step 0: Clean up previous clone (optional) ---
-    echo "Checking for existing directory: $CLONE_DIR"
-    if [ -d "$CLONE_DIR" ]; then
-        echo "Found existing directory, removing it..."
-        rm -rf "$CLONE_DIR"
-        if [ $? -ne 0 ]; then
-            handle_error "Failed to remove existing directory: $CLONE_DIR"
+        # --- Step 0: Clean up previous clone (optional) ---
+        echo "Checking for existing directory: $CLONE_DIR_HAPI"
+        if [ -d "$CLONE_DIR_HAPI" ]; then
+            echo "Found existing directory, removing it..."
+            rm -rf "$CLONE_DIR_HAPI"
+            if [ $? -ne 0 ]; then
+                handle_error "Failed to remove existing directory: $CLONE_DIR_HAPI"
+            fi
+            echo "Existing directory removed."
+        else
+            echo "Directory does not exist, proceeding with clone."
         fi
-        echo "Existing directory removed."
-    else
-        echo "Directory does not exist, proceeding with clone."
-    fi
-    echo
+        echo
 
-    # --- Step 1: Clone the HAPI FHIR server repository ---
-    echo "Cloning repository: $REPO_URL into $CLONE_DIR..."
-    git clone "$REPO_URL" "$CLONE_DIR"
-    if [ $? -ne 0 ]; then
-        handle_error "Failed to clone repository. Check Git installation and network connection."
-    fi
-    echo "Repository cloned successfully."
-    echo
-
-    # --- Step 2: Navigate into the cloned directory ---
-    echo "Changing directory to $CLONE_DIR..."
-    cd "$CLONE_DIR" || handle_error "Failed to change directory to $CLONE_DIR."
-    echo "Current directory: $(pwd)"
-    echo
-
-    # --- Step 3: Build the HAPI server using Maven ---
-    echo "===> Starting Maven build (Step 3)..."
-    mvn clean package -DskipTests=true -Pboot
-    if [ $? -ne 0 ]; then
-        echo "ERROR: Maven build failed."
-        cd ..
-        handle_error "Maven build process resulted in an error."
-    fi
-    echo "Maven build completed successfully."
-    echo
-
-    # --- Step 4: Copy the configuration file ---
-    echo "===> Starting file copy (Step 4)..."
-    echo "Copying configuration file..."
-    # Corrected SOURCE_CONFIG_PATH to be relative to the new current directory ($CLONE_DIR)
-    # This assumes the original script's SOURCE_CONFIG_PATH was relative to its execution location
-    # If SOURCE_CONFIG_DIR is ../hapi-fhir-setup relative to script's original location:
-    # Then from within CLONE_DIR, it becomes ../../hapi-fhir-setup
-    # We defined SOURCE_CONFIG_PATH earlier relative to the script start.
-    # So, when inside CLONE_DIR, the path from original script location should be used.
-    # The original script had: set SOURCE_CONFIG_PATH=..\%SOURCE_CONFIG_DIR%\target\classes\%CONFIG_FILE%
-    # And then: xcopy "%SOURCE_CONFIG_PATH%" "target\classes\"
-    # This implies SOURCE_CONFIG_PATH is relative to the original script's location, not the $CLONE_DIR
-    # Therefore, we need to construct the correct relative path from *within* $CLONE_DIR back to the source.
-    # Assuming the script is in dir X, and SOURCE_CONFIG_DIR is ../hapi-fhir-setup from X.
-    # So, hapi-fhir-setup is a sibling of X's parent.
-    # If CLONE_DIR is also in X, then from within CLONE_DIR, the path is ../ + original SOURCE_CONFIG_PATH
-    # For simplicity and robustness, let's use an absolute path or a more clearly defined relative path from the start.
-    # The original `SOURCE_CONFIG_PATH=..\%SOURCE_CONFIG_DIR%\target\classes\%CONFIG_FILE%` implies
-    # that `hapi-fhir-setup` is a sibling of the directory where the script *is being run from*.
-
-    # Let's assume the script is run from the root of FHIRFLARE-IG-Toolkit.
-    # And hapi-fhir-setup is also in the root, next to this script.
-    # Then SOURCE_CONFIG_PATH would be ./hapi-fhir-setup/target/classes/application.yaml
-    # And from within ./hapi-fhir-jpaserver/, the path would be ../hapi-fhir-setup/target/classes/application.yaml
-
-    # The original batch file sets SOURCE_CONFIG_PATH as "..\%SOURCE_CONFIG_DIR%\target\classes\%CONFIG_FILE%"
-    # And COPIES it to "target\classes\" *while inside CLONE_DIR*.
-    # This means the source path is relative to where the *cd %CLONE_DIR%* happened from.
-    # Let's make it relative to the script's initial execution directory.
-    INITIAL_SCRIPT_DIR=$(pwd)
-    ABSOLUTE_SOURCE_CONFIG_PATH="${INITIAL_SCRIPT_DIR}/../${SOURCE_CONFIG_DIR}/target/classes/${CONFIG_FILE}" # This matches the ..\ logic
-
-    echo "Source: $ABSOLUTE_SOURCE_CONFIG_PATH"
-    echo "Destination: target/classes/$CONFIG_FILE"
-
-    if [ ! -f "$ABSOLUTE_SOURCE_CONFIG_PATH" ]; then
-        echo "WARNING: Source configuration file not found at $ABSOLUTE_SOURCE_CONFIG_PATH."
-        echo "The script will continue, but the server might use default configuration."
-    else
-        cp "$ABSOLUTE_SOURCE_CONFIG_PATH" "target/classes/"
+        # --- Step 1: Clone the HAPI FHIR server repository ---
+        echo "Cloning repository: $REPO_URL_HAPI into $CLONE_DIR_HAPI..."
+        git clone "$REPO_URL_HAPI" "$CLONE_DIR_HAPI"
         if [ $? -ne 0 ]; then
-            echo "WARNING: Failed to copy configuration file. Check if the source file exists and permissions."
+            handle_error "Failed to clone repository. Check Git installation and network connection."
+        fi
+        echo "Repository cloned successfully."
+        echo
+
+        # --- Step 2: Navigate into the cloned directory ---
+        echo "Changing directory to $CLONE_DIR_HAPI..."
+        cd "$CLONE_DIR_HAPI" || handle_error "Failed to change directory to $CLONE_DIR_HAPI."
+        echo "Current directory: $(pwd)"
+        echo
+
+        # --- Step 3: Build the HAPI server using Maven ---
+        echo "===> Starting Maven build (Step 3)..."
+        mvn clean package -DskipTests=true -Pboot
+        if [ $? -ne 0 ]; then
+            echo "ERROR: Maven build failed."
+            cd ..
+            handle_error "Maven build process resulted in an error."
+        fi
+        echo "Maven build completed successfully."
+        echo
+
+        # --- Step 4: Copy the configuration file ---
+        echo "===> Starting file copy (Step 4)..."
+        echo "Copying configuration file..."
+        INITIAL_SCRIPT_DIR=$(pwd)
+        ABSOLUTE_SOURCE_CONFIG_PATH="${INITIAL_SCRIPT_DIR}/../${SOURCE_CONFIG_DIR}/target/classes/${CONFIG_FILE}"
+
+        echo "Source: $ABSOLUTE_SOURCE_CONFIG_PATH"
+        echo "Destination: target/classes/$CONFIG_FILE"
+
+        if [ ! -f "$ABSOLUTE_SOURCE_CONFIG_PATH" ]; then
+            echo "WARNING: Source configuration file not found at $ABSOLUTE_SOURCE_CONFIG_PATH."
             echo "The script will continue, but the server might use default configuration."
         else
-            echo "Configuration file copied successfully."
+            cp "$ABSOLUTE_SOURCE_CONFIG_PATH" "target/classes/"
+            if [ $? -ne 0 ]; then
+                echo "WARNING: Failed to copy configuration file. Check if the source file exists and permissions."
+                echo "The script will continue, but the server might use default configuration."
+            else
+                echo "Configuration file copied successfully."
+            fi
         fi
-    fi
-    echo
+        echo
 
-    # --- Step 5: Navigate back to the parent directory ---
-    echo "===> Changing directory back (Step 5)..."
-    cd .. || handle_error "Failed to change back to the parent directory."
-    echo "Current directory: $(pwd)"
-    echo
+        # --- Step 5: Navigate back to the parent directory ---
+        echo "===> Changing directory back (Step 5)..."
+        cd .. || handle_error "Failed to change back to the parent directory."
+        echo "Current directory: $(pwd)"
+        echo
+        ;;
 
-else # APP_MODE is "lite"
-    echo "Running Lite setup, skipping HAPI FHIR build..."
-    # Ensure the hapi-fhir-jpaserver directory doesn't exist or is empty if Lite mode is chosen
-    if [ -d "$CLONE_DIR" ]; then
-        echo "Found existing HAPI directory ($CLONE_DIR) in Lite mode. Removing it..."
-        rm -rf "$CLONE_DIR"
-    fi
-    # Create empty target directories expected by Dockerfile COPY, even if not used
-    mkdir -p "${CLONE_DIR}/target/classes"
-    mkdir -p "${CLONE_DIR}/custom" # This was in the original batch, ensure it's here
-    # Create a placeholder empty WAR file and application.yaml to satisfy Dockerfile COPY
-    touch "${CLONE_DIR}/target/ROOT.war"
-    touch "${CLONE_DIR}/target/classes/application.yaml"
-    echo "Placeholder files and directories created for Lite mode build in $CLONE_DIR."
-    echo
-fi
+    "candle")
+        echo "Running FHIR Candle server setup..."
+        echo
+        
+        # --- Step 0: Clean up previous clone (optional) ---
+        echo "Checking for existing directory: $CLONE_DIR_CANDLE"
+        if [ -d "$CLONE_DIR_CANDLE" ]; then
+            echo "Found existing directory, removing it..."
+            rm -rf "$CLONE_DIR_CANDLE"
+            if [ $? -ne 0 ]; then
+                handle_error "Failed to remove existing directory: $CLONE_DIR_CANDLE"
+            fi
+            echo "Existing directory removed."
+        else
+            echo "Directory does not exist, proceeding with clone."
+        fi
+        echo
 
-# === Modify docker-compose.yml to set APP_MODE ===
-echo "Updating docker-compose.yml with APP_MODE=$APP_MODE..."
+        # --- Step 1: Clone the FHIR Candle server repository ---
+        echo "Cloning repository: $REPO_URL_CANDLE into $CLONE_DIR_CANDLE..."
+        git clone "$REPO_URL_CANDLE" "$CLONE_DIR_CANDLE"
+        if [ $? -ne 0 ]; then
+            handle_error "Failed to clone repository. Check Git and Dotnet SDK installation and network connection."
+        fi
+        echo "Repository cloned successfully."
+        echo
+        
+        # --- Step 2: Navigate into the cloned directory ---
+        echo "Changing directory to $CLONE_DIR_CANDLE..."
+        cd "$CLONE_DIR_CANDLE" || handle_error "Failed to change directory to $CLONE_DIR_CANDLE."
+        echo "Current directory: $(pwd)"
+        echo
+
+        # --- Step 3: Build the FHIR Candle server using Dotnet ---
+        echo "===> Starting Dotnet build (Step 3)..."
+        dotnet publish -c Release -f net9.0 -o publish
+        if [ $? -ne 0 ]; then
+            handle_error "Dotnet build failed. Check Dotnet SDK installation."
+        fi
+        echo "Dotnet build completed successfully."
+        echo
+        
+        # --- Step 4: Navigate back to the parent directory ---
+        echo "===> Changing directory back (Step 4)..."
+        cd .. || handle_error "Failed to change back to the parent directory."
+        echo "Current directory: $(pwd)"
+        echo
+        ;;
+
+    *) # APP_MODE is Lite, no SERVER_TYPE
+        echo "Running Lite setup, skipping server build..."
+        if [ -d "$CLONE_DIR_HAPI" ]; then
+            echo "Found existing HAPI directory in Lite mode. Removing it to avoid build issues..."
+            rm -rf "$CLONE_DIR_HAPI"
+        fi
+        if [ -d "$CLONE_DIR_CANDLE" ]; then
+            echo "Found existing Candle directory in Lite mode. Removing it to avoid build issues..."
+            rm -rf "$CLONE_DIR_CANDLE"
+        fi
+        mkdir -p "${CLONE_DIR_HAPI}/target/classes"
+        mkdir -p "${CLONE_DIR_HAPI}/custom"
+        touch "${CLONE_DIR_HAPI}/target/ROOT.war"
+        touch "${CLONE_DIR_HAPI}/target/classes/application.yaml"
+        mkdir -p "${CLONE_DIR_CANDLE}/publish"
+        touch "${CLONE_DIR_CANDLE}/publish/fhir-candle.dll"
+        echo "Placeholder files and directories created for Lite mode build."
+        echo
+        ;;
+esac
+
+# === MODIFIED: Update docker-compose.yml to set APP_MODE and HAPI_FHIR_URL and DOCKERFILE ===
+echo "Updating docker-compose.yml with APP_MODE=$APP_MODE and HAPI_FHIR_URL..."
 DOCKER_COMPOSE_TMP="docker-compose.yml.tmp"
 DOCKER_COMPOSE_ORIG="docker-compose.yml"
 
+HAPI_URL_TO_USE="https://fhir.hl7.org.au/aucore/fhir/DEFAULT/"
+if [ -n "$CUSTOM_FHIR_URL_VAL" ]; then
+    HAPI_URL_TO_USE="$CUSTOM_FHIR_URL_VAL"
+elif [ "$SERVER_TYPE" = "candle" ]; then
+    HAPI_URL_TO_USE="http://localhost:5826/fhir/${CANDLE_FHIR_VERSION}"
+else
+    HAPI_URL_TO_USE="http://localhost:8080/fhir"
+fi
+
+DOCKERFILE_TO_USE="Dockerfile.lite"
+if [ "$SERVER_TYPE" = "hapi" ]; then
+    DOCKERFILE_TO_USE="Dockerfile.hapi"
+elif [ "$SERVER_TYPE" = "candle" ]; then
+    DOCKERFILE_TO_USE="Dockerfile.candle"
+fi
+
 cat << EOF > "$DOCKER_COMPOSE_TMP"
 version: '3.8'
 services:
   fhirflare:
     build:
       context: .
-      dockerfile: Dockerfile
+      dockerfile: ${DOCKERFILE_TO_USE}
     ports:
+EOF
+
+if [ "$SERVER_TYPE" = "candle" ]; then
+    cat << EOF >> "$DOCKER_COMPOSE_TMP"
       - "5000:5000"
-      - "8080:8080" # Keep port exposed, even if Tomcat isn't running useful stuff in Lite
+      - "5001:5826"
+EOF
+else
+    cat << EOF >> "$DOCKER_COMPOSE_TMP"
+      - "5000:5000"
+      - "8080:8080"
+EOF
+fi
+
+cat << EOF >> "$DOCKER_COMPOSE_TMP"
     volumes:
       - ./instance:/app/instance
       - ./static/uploads:/app/static/uploads
-      - ./instance/hapi-h2-data/:/app/h2-data # Keep volume mounts consistent
       - ./logs:/app/logs
+EOF
+
+if [ "$SERVER_TYPE" = "hapi" ]; then
+    cat << EOF >> "$DOCKER_COMPOSE_TMP"
+      - ./instance/hapi-h2-data/:/app/h2-data # Keep volume mounts consistent
+      - ./hapi-fhir-jpaserver/target/ROOT.war:/usr/local/tomcat/webapps/ROOT.war
+      - ./hapi-fhir-jpaserver/target/classes/application.yaml:/usr/local/tomcat/conf/application.yaml
+EOF
+elif [ "$SERVER_TYPE" = "candle" ]; then
+    cat << EOF >> "$DOCKER_COMPOSE_TMP"
+      - ./fhir-candle/publish/:/app/fhir-candle-publish/
+EOF
+fi
+
+cat << EOF >> "$DOCKER_COMPOSE_TMP"
     environment:
       - FLASK_APP=app.py
       - FLASK_ENV=development
       - NODE_PATH=/usr/lib/node_modules
       - APP_MODE=${APP_MODE}
       - APP_BASE_URL=http://localhost:5000
-      - HAPI_FHIR_URL=http://localhost:8080/fhir
+      - HAPI_FHIR_URL=${HAPI_URL_TO_USE}
+EOF
+
+if [ "$SERVER_TYPE" = "candle" ]; then
+    cat << EOF >> "$DOCKER_COMPOSE_TMP"
+      - ASPNETCORE_URLS=http://0.0.0.0:5826
+EOF
+fi
+
+cat << EOF >> "$DOCKER_COMPOSE_TMP"
     command: supervisord -c /etc/supervisord.conf
 EOF
 

supervisord.conf

@@ -33,4 +33,18 @@ stdout_logfile_maxbytes=10MB
 stdout_logfile_backups=5 
 stderr_logfile=/app/logs/tomcat_err.log 
 stderr_logfile_maxbytes=10MB 
-stderr_logfile_backups=5
+stderr_logfile_backups=5
+
+[program:candle]
+command=dotnet /app/fhir-candle-publish/fhir-candle.dll
+directory=/app/fhir-candle-publish
+autostart=true
+autorestart=true
+startsecs=10
+stopwaitsecs=10
+stdout_logfile=/app/logs/candle.log
+stdout_logfile_maxbytes=10MB
+stdout_logfile_backups=5
+stderr_logfile=/app/logs/candle_err.log
+stderr_logfile_maxbytes=10MB
+stderr_logfile_backups=5

templates/about.html

@@ -19,11 +19,11 @@
             <p>Whether you're downloading the latest IG versions, checking compliance, converting resources to FHIR Shorthand (FSH), or pushing guides to a test server, this toolkit aims to be an essential companion.</p>
              {% if app_mode == 'lite' %}
                 <div class="alert alert-info" role="alert">
-                    <i class="bi bi-info-circle-fill me-2"></i>You are currently running the <strong>Lite Version</strong> of the toolkit. This version excludes the built-in HAPI FHIR server and relies on external FHIR servers for functionalities like the API Explorer and Operations UI. Validation uses local StructureDefinition checks.
+                    <i class="bi bi-info-circle-fill me-2"></i>You are currently running the <strong>Lite Version</strong> of the toolkit. This version excludes the built-in FHIR server depending and relies on external FHIR servers for functionalities like the API Explorer and Operations UI. Validation uses local StructureDefinition checks.
                 </div>
              {% else %}
                  <div class="alert alert-success" role="alert">
-                     <i class="bi bi-check-circle-fill me-2"></i>You are currently running the <strong>Standalone Version</strong> of the toolkit, which includes a built-in HAPI FHIR server (accessible via the `/fhir` proxy) for local validation and exploration.
+                     <i class="bi bi-check-circle-fill me-2"></i>You are currently running the <strong>Standalone Version</strong> of the toolkit, which includes a built-in FHIR server based on your build choice (accessible via the `/fhir` proxy) for local validation and exploration, if you configured the Server ENV variable this could also be whatever customer server you have pointed the local ENV variable at allowing you to use any fhir server of your choice.
                  </div>
              {% endif %}
 
@@ -36,7 +36,7 @@
                 <li><strong>FHIR Server Interaction:</strong>
                     <ul>
                         <li>Push processed IGs (including dependencies) to a target FHIR server with real-time console feedback.</li>
-                        <li>Explore FHIR server capabilities and interact with resources using the "FHIR API Explorer" (GET/POST/PUT/DELETE) and "FHIR UI Operations" pages, supporting both the local HAPI server (in Standalone mode) and external servers.</li>
+                        <li>Explore FHIR server capabilities and interact with resources using the "FHIR API Explorer" (GET/POST/PUT/DELETE) and "FHIR UI Operations" pages, supporting both the local server (in Standalone mode) and external servers.</li>
                     </ul>
                 </li>
                 <li><strong>FHIR Shorthand (FSH) Conversion:</strong> Convert FHIR JSON or XML resources to FSH using the integrated GoFSH tool. Offers advanced options like context package selection, various output styles, FHIR version selection, dependency loading, alias file usage, and round-trip validation ("Fishing Trip") with SUSHI. Includes a loading indicator during conversion.</li>
@@ -48,7 +48,7 @@
             <ul>
                 <li><strong>Backend:</strong> Python with the Flask web framework and SQLAlchemy for database interaction (SQLite).</li>
                 <li><strong>Frontend:</strong> HTML, Bootstrap 5 for styling, and JavaScript for interactivity and dynamic content loading. Uses Lottie-Web for animations.</li>
-                <li><strong>FHIR Tooling:</strong> Integrates GoFSH and SUSHI (via Node.js) for FSH conversion and validation. Utilizes the HAPI FHIR server (in Standalone mode) for robust FHIR validation and operations.</li>
+                <li><strong>FHIR Tooling:</strong> Integrates GoFSH and SUSHI (via Node.js) for FSH conversion and validation. Utilizes the Local FHIR server (in Standalone mode) for robust FHIR validation and operations.</li>
                 <li><strong>Deployment:</strong> Runs within a Docker container managed by Docker Compose and Supervisor, ensuring a consistent environment.</li>
             </ul>
 

templates/base.html

@@ -796,11 +796,14 @@
                     <li class="nav-item">
                         <a class="nav-link {{ 'active' if request.endpoint == 'fsh_converter' else '' }}" href="{{ url_for('fsh_converter') }}"><i class="fas fa-file-code me-1"></i> FSH Converter</a>
                     </li>
-                    {% if app_mode != 'lite' %}
+                    <!-- <li class="nav-item">
+                        <a class="nav-link {{ 'active' if request.endpoint == 'ig_configurator' else '' }}" href="{{ url_for('ig_configurator') }}"><i class="fas fa-wrench me-1"></i> IG Valid-Conf Gen</a>
+                    </li> -->
+                    <!-- {% if app_mode != 'lite' %}
                     <li class="nav-item">
                         <a class="nav-link {{ 'active' if request.endpoint == 'config_hapi' else '' }}" href="{{ url_for('config_hapi') }}"><i class="fas fa-cog me-1"></i> Configure HAPI</a>
                     </li>
-                    {% endif %}
+                    {% endif %} -->
                     </ul>
                 <div class="navbar-controls d-flex align-items-center">
                     <div class="form-check form-switch">

templates/cp_downloaded_igs.html

@@ -40,7 +40,7 @@
 
     <div class="row g-4">
         <!-- LEFT: Downloaded Packages -->
-        <div class="col-md-6">
+        <div class="col-md-5">
             <div class="card h-100">
                 <div class="card-header"><i class="bi bi-folder-symlink me-1"></i> Downloaded Packages ({{ packages|length }})</div>
                 <div class="card-body">
@@ -65,20 +65,20 @@
                                             </td>
                                             <td>{{ pkg.version }}</td>
                                             <td>
-                                                <div class="btn-group btn-group-sm">
+                                                <div class="btn-group-vertical btn-group-sm w-80">
                                                     {% if is_processed %}
                                                         <span class="btn btn-success disabled"><i class="bi bi-check-lg"></i> Processed</span>
                                                     {% else %}
                                                         <form method="POST" action="{{ url_for('process_ig') }}" style="display:inline;">
                                                             {{ form.csrf_token }}
                                                             <input type="hidden" name="filename" value="{{ pkg.filename }}">
-                                                            <button type="submit" class="btn btn-outline-primary"><i class="bi bi-gear"></i> Process</button>
+                                                            <button type="submit" class="btn btn-outline-primary w-80"><i class="bi bi-gear"></i> Process</button>
                                                         </form>
                                                     {% endif %}
                                                     <form method="POST" action="{{ url_for('delete_ig') }}" style="display:inline;">
                                                         {{ form.csrf_token }}
                                                         <input type="hidden" name="filename" value="{{ pkg.filename }}">
-                                                        <button type="submit" class="btn btn-outline-danger" onclick="return confirm('Are you sure you want to delete {{ pkg.name }}#{{ pkg.version }}?');"><i class="bi bi-trash"></i> Delete</button>
+                                                        <button type="submit" class="btn btn-outline-danger w-80" onclick="return confirm('Are you sure you want to delete {{ pkg.name }}#{{ pkg.version }}?');"><i class="bi bi-trash"></i> Delete</button>
                                                     </form>
                                                 </div>
                                             </td>
@@ -105,7 +105,7 @@
         </div>
 
         <!-- RIGHT: Processed Packages -->
-        <div class="col-md-6">
+        <div class="col-md-7">
             <div class="card h-100">
                 <div class="card-header"><i class="bi bi-check-circle me-1"></i> Processed Packages ({{ processed_list|length }})</div>
                 <div class="card-body">
@@ -139,12 +139,12 @@
                                                 {% endif %}
                                             </td>
                                             <td>
-                                                <div class="btn-group-vertical btn-group-sm w-100">
-                                                    <a href="{{ url_for('view_ig', processed_ig_id=processed_ig.id) }}" class="btn btn-outline-info w-100" title="View Details"><i class="bi bi-search"></i> View</a>
+                                                <div class="btn-group-vertical btn-group-sm w-80">
+                                                    <a href="{{ url_for('view_ig', processed_ig_id=processed_ig.id) }}" class="btn btn-outline-info w-80" title="View Details"><i class="bi bi-search"></i> View</a>
                                                     <form method="POST" action="{{ url_for('unload_ig') }}" style="display:inline;">
                                                         {{ form.csrf_token }}
                                                         <input type="hidden" name="ig_id" value="{{ processed_ig.id }}">
-                                                        <button type="submit" class="btn btn-outline-warning w-100 mt-1" onclick="return confirm('Are you sure you want to unload {{ processed_ig.package_name }}#{{ processed_ig.version }}?');"><i class="bi bi-x-lg"></i> Unload</button>
+                                                        <button type="submit" class="btn btn-outline-warning w-80 mt-1" onclick="return confirm('Are you sure you want to unload {{ processed_ig.package_name }}#{{ processed_ig.version }}?');"><i class="bi bi-x-lg"></i> Unload</button>
                                                     </form>
                                                 </div>
                                             </td>

templates/fhir_ui.html

@@ -21,7 +21,7 @@
                     <label class="form-label">FHIR Server</label>
                     <div class="input-group">
                         <button type="button" class="btn btn-outline-primary" id="toggleServer">
-                            <span id="toggleLabel">Use Local HAPI</span>
+                            <span id="toggleLabel">Use Local Server</span>
                         </button>
                         <input type="text" class="form-control" id="fhirServerUrl" name="fhir_server_url" placeholder="e.g., https://hapi.fhir.org/baseR4" style="display: none;" aria-describedby="fhirServerHelp">
                     </div>
@@ -126,7 +126,7 @@ document.addEventListener('DOMContentLoaded', function() {
     const authSection = document.getElementById('authSection');
     const authTypeSelect = document.getElementById('authType');
     const authInputsGroup = document.getElementById('authInputsGroup');
-    const bearerTokenInput = document.getElementById('bearerToken');
+    const bearerTokenInput = document.getElementById('bearerTokenInput');
     const basicAuthInputs = document.getElementById('basicAuthInputs');
     const usernameInput = document.getElementById('username');
     const passwordInput = document.getElementById('password');
@@ -212,7 +212,7 @@ document.addEventListener('DOMContentLoaded', function() {
             toggleServerButton.style.pointerEvents = 'auto';
             toggleServerButton.removeAttribute('aria-disabled');
             toggleServerButton.title = "Toggle between Local HAPI and Custom URL";
-            toggleLabel.textContent = useLocalHapi ? 'Using Local HAPI' : 'Using Custom URL';
+            toggleLabel.textContent = useLocalHapi ? 'Using Local Server' : 'Using Custom URL';
             fhirServerUrlInput.style.display = useLocalHapi ? 'none' : 'block';
             fhirServerUrlInput.placeholder = "e.g., https://hapi.fhir.org/baseR4";
             fhirServerUrlInput.required = !useLocalHapi;
@@ -244,7 +244,8 @@ document.addEventListener('DOMContentLoaded', function() {
             fhirServerUrlInput.value = '';
         }
         updateServerToggleUI();
-        console.log(`Server toggled: Now using ${useLocalHapi ? 'Local HAPI' : 'Custom URL'}`);
+        updateAuthInputsUI();
+        console.log(`Server toggled: Now using ${useLocalHapi ? 'Local Server' : 'Custom URL'}`);
     }
 
     function updateRequestBodyVisibility() {
@@ -295,7 +296,7 @@ document.addEventListener('DOMContentLoaded', function() {
         const customUrl = fhirServerUrlInput.value.trim();
         let body = undefined;
         const authType = authTypeSelect ? authTypeSelect.value : 'none';
-        const bearerToken = bearerTokenInput ? bearerTokenInput.value.trim() : '';
+        const bearerToken = document.getElementById('bearerToken').value.trim();
         const username = usernameInput ? usernameInput.value.trim() : '';
         const password = passwordInput ? passwordInput.value : '';
 
@@ -334,7 +335,7 @@ document.addEventListener('DOMContentLoaded', function() {
         if (!useLocalHapi) {
             if (authType === 'bearer' && !bearerToken) {
                 alert('Please enter a Bearer Token.');
-                bearerTokenInput.classList.add('is-invalid');
+                document.getElementById('bearerToken').classList.add('is-invalid');
                 sendButton.disabled = false;
                 sendButton.textContent = 'Send Request';
                 return;
@@ -453,7 +454,7 @@ document.addEventListener('DOMContentLoaded', function() {
         } catch (error) {
             console.error('Fetch error:', error);
             responseCard.style.display = 'block';
-            responseStatus.textContent = `Network Error`;
+            responseStatus.textContent = 'Network Error';
             responseStatus.className = 'badge bg-danger';
             responseHeaders.textContent = 'N/A';
             let errorDetail = `Error: ${error.message}\n\n`;

templates/ig_configurator.html

@@ -0,0 +1,40 @@
+{% extends "base.html" %}
+
+{% block content %}
+<div class="container mt-4">
+    <h2>IG Configuration Generator</h2>
+    <p>Select the Implementation Guides you want to load into Local FHIR for validation. This will generate the YAML configuration required for the <code>application.yaml</code> file.</p>
+    
+    <div class="card mb-4">
+        <div class="card-header">Select IGs</div>
+        <div class="card-body">
+            <form method="POST">
+                {{ form.hidden_tag() }}
+                <div class="mb-3">
+                    <label class="form-label">IGs and their dependencies</label>
+                    {% for choice in form.igs.choices %}
+                    <div class="form-check">
+                        <input class="form-check-input" type="checkbox" name="igs" value="{{ choice[0] }}" id="ig-{{ choice[0] }}">
+                        <label class="form-check-label" for="ig-{{ choice[0] }}">{{ choice[1] }}</label>
+                    </div>
+                    {% endfor %}
+                </div>
+                {{ form.generate_yaml(class="btn btn-primary") }}
+            </form>
+        </div>
+    </div>
+    
+    {% if yaml_output %}
+    <div class="card mt-4">
+        <div class="card-header">Generated <code>application.yaml</code> Excerpt</div>
+        <div class="card-body">
+            <p>Copy the following configuration block and paste it into the `hapi.fhir` section of your HAPI server's <code>application.yaml</code> file.</p>
+            <pre><code class="language-yaml">{{ yaml_output }}</code></pre>
+            <div class="alert alert-warning mt-3">
+                <strong>Important:</strong> After updating the <code>application.yaml</code> file, you must **restart your HAPI server** for the changes to take effect.
+            </div>
+        </div>
+    </div>
+    {% endif %}
+</div>
+{% endblock %}

templates/retrieve_split_data.html

@@ -10,7 +10,6 @@
         </p>
     </div>
 </div>
-
 <div class="container mt-4">
     <div class="card shadow-sm mb-4">
         <div class="card-header">
@@ -27,19 +26,18 @@
                     </ul>
                 </div>
             {% endif %}
-            <form id="retrieveForm" method="POST" enctype="multipart/form-data">
-                {{ form.hidden_tag() }}
+            <form id="retrieveForm" method="POST">
+                {{ form.csrf_token(id='retrieve_csrf_token') }}
                 <div class="mb-3">
                     <label class="form-label fw-bold">FHIR Server</label>
                     <div class="input-group">
                         <button type="button" class="btn btn-outline-primary" id="toggleServer">
-                            <span id="toggleLabel">Use Local HAPI</span>
+                            <span id="toggleLabel">Use Local Server</span>
                         </button>
                         {{ form.fhir_server_url(class="form-control", id="fhirServerUrl", style="display: none;", placeholder="e.g., https://fhir.hl7.org.au/aucore/fhir/DEFAULT", **{'aria-describedby': 'fhirServerHelp'}) }}
                     </div>
-                    <small id="fhirServerHelp" class="form-text text-muted">Toggle to use local HAPI (/fhir proxy) or enter a custom FHIR server URL.</small>
+                    <small id="fhirServerHelp" class="form-text text-muted">Toggle to use local Fhir Server(/fhir proxy) or enter a custom FHIR server URL.</small>
                 </div>
-
                 {# Authentication Section (Shown for Custom URL) #}
                 <div class="mb-3" id="authSection" style="display: none;">
                     <label class="form-label fw-bold">Authentication</label>
@@ -68,7 +66,6 @@
                     </div>
                     <small class="form-text text-muted">Select authentication method for the custom FHIR server.</small>
                 </div>
-
                 {# Checkbox Row #}
                 <div class="row g-3 mb-3 align-items-center">
                     <div class="col-md-6">
@@ -78,7 +75,6 @@
                         {{ render_field(form.fetch_reference_bundles, id='fetch_reference_bundles_checkbox') }}
                     </div>
                 </div>
-
                 <button type="button" class="btn btn-primary mb-3" id="fetchMetadata">Fetch Metadata</button>
                 <div class="banner3 mt-3" id="resourceTypes" style="display: none;">
                     <h5>Resource Types</h5>
@@ -102,14 +98,13 @@
             </div>
         </div>
     </div>
-
     <div class="card shadow-sm">
         <div class="card-header">
             <h4 class="my-0 fw-normal"><i class="bi bi-scissors me-2"></i>Split Bundles</h4>
         </div>
         <div class="card-body">
             <form id="splitForm" method="POST" enctype="multipart/form-data">
-                {{ form.hidden_tag() }}
+                {{ form.csrf_token(id='split_csrf_token') }}
                 <div class="mb-3">
                     <label class="form-label fw-bold">Bundle Source</label>
                     <div class="form-check">
@@ -141,7 +136,6 @@
         </div>
     </div>
 </div>
-
 <script>
 document.addEventListener('DOMContentLoaded', () => {
     // --- DOM Element References ---
@@ -168,11 +162,10 @@ document.addEventListener('DOMContentLoaded', () => {
     const authSection = document.getElementById('authSection');
     const authTypeSelect = document.getElementById('authType');
     const authInputsGroup = document.getElementById('authInputsGroup');
-    const bearerTokenInput = document.getElementById('bearerToken');
+    const bearerTokenInput = document.getElementById('bearerTokenInput');
     const basicAuthInputs = document.getElementById('basicAuthInputs');
     const usernameInput = document.getElementById('username');
     const passwordInput = document.getElementById('password');
-
     // --- State & Config Variables ---
     const appMode = '{{ app_mode | default("standalone") | lower }}';
     const apiKey = '{{ api_key }}';
@@ -181,10 +174,9 @@ document.addEventListener('DOMContentLoaded', () => {
     let retrieveZipPath = null;
     let splitZipPath = null;
     let fetchedMetadataCache = null;
-
+    let localHapiBaseUrl = ''; // To store the fetched URL
     // --- Helper Functions ---
     const sanitizeText = (str) => str ? String(str).replace(/</g, "&lt;").replace(/>/g, "&gt;") : "";
-
     // --- UI Update Functions ---
     function updateBundleSourceUI() {
         const selectedSource = Array.from(bundleSourceRadios).find(radio => radio.checked)?.value;
@@ -195,10 +187,23 @@ document.addEventListener('DOMContentLoaded', () => {
             splitBundleZipInput.required = selectedSource === 'upload';
         }
     }
-
+    async function fetchLocalUrlAndSetUI() {
+        try {
+            const response = await fetch('/api/get-local-server-url');
+            if (!response.ok) throw new Error('Failed to fetch local server URL.');
+            const data = await response.json();
+            localHapiBaseUrl = data.url.replace(/\/+$/, ''); // Normalize by removing trailing slashes
+            console.log(`Local HAPI URL fetched: ${localHapiBaseUrl}`);
+        } catch (error) {
+            console.error(error);
+            localHapiBaseUrl = '/fhir'; // Fallback to proxy
+            alert('Could not fetch local HAPI server URL. Falling back to proxy.');
+        } finally {
+            updateServerToggleUI();
+        }
+    }
     function updateServerToggleUI() {
         if (!toggleLabel || !fhirServerUrlInput || !toggleServerButton || !authSection) return;
-
         if (appMode === 'lite') {
             useLocalHapi = false;
             toggleServerButton.disabled = true;
@@ -216,8 +221,7 @@ document.addEventListener('DOMContentLoaded', () => {
             toggleServerButton.classList.remove('disabled');
             toggleServerButton.style.pointerEvents = 'auto';
             toggleServerButton.removeAttribute('aria-disabled');
-            toggleServerButton.title = "Toggle between Local HAPI and Custom URL";
-            toggleLabel.textContent = useLocalHapi ? 'Using Local HAPI' : 'Using Custom URL';
+            toggleLabel.textContent = useLocalHapi ? 'Use Local Server' : 'Use Custom URL';
             fhirServerUrlInput.style.display = useLocalHapi ? 'none' : 'block';
             fhirServerUrlInput.placeholder = "e.g., https://hapi.fhir.org/baseR4";
             fhirServerUrlInput.required = !useLocalHapi;
@@ -227,18 +231,22 @@ document.addEventListener('DOMContentLoaded', () => {
         updateAuthInputsUI();
         console.log(`Server toggle UI updated: useLocalHapi=${useLocalHapi}, customUrl=${fhirServerUrlInput.value}`);
     }
-
     function updateAuthInputsUI() {
         if (!authTypeSelect || !authInputsGroup || !bearerTokenInput || !basicAuthInputs) return;
         const authType = authTypeSelect.value;
         authInputsGroup.style.display = (authType === 'bearer' || authType === 'basic') ? 'block' : 'none';
         bearerTokenInput.style.display = authType === 'bearer' ? 'block' : 'none';
         basicAuthInputs.style.display = authType === 'basic' ? 'block' : 'none';
-        if (authType !== 'bearer' && bearerTokenInput) bearerTokenInput.value = '';
-        if (authType !== 'basic' && usernameInput) usernameInput.value = '';
-        if (authType !== 'basic' && passwordInput) passwordInput.value = '';
+        if (authType !== 'bearer') {
+            // Correctly reference the input element by its ID
+            const tokenInput = document.getElementById('bearerToken');
+            if (tokenInput) tokenInput.value = '';
+        }
+        if (authType !== 'basic') {
+            if (usernameInput) usernameInput.value = '';
+            if (passwordInput) passwordInput.value = '';
+        }
     }
-
     function toggleFetchReferenceBundles() {
         if (validateReferencesCheckbox && fetchReferenceBundlesGroup) {
             fetchReferenceBundlesGroup.style.display = validateReferencesCheckbox.checked ? 'block' : 'none';
@@ -249,44 +257,40 @@ document.addEventListener('DOMContentLoaded', () => {
             console.warn("Could not find checkbox elements needed for toggling.");
         }
     }
-
     // --- Event Listeners ---
     bundleSourceRadios.forEach(radio => {
         radio.addEventListener('change', updateBundleSourceUI);
     });
-
     toggleServerButton.addEventListener('click', () => {
         if (appMode === 'lite') return;
         useLocalHapi = !useLocalHapi;
         if (useLocalHapi) fhirServerUrlInput.value = '';
         updateServerToggleUI();
+        updateAuthInputsUI();
         resourceTypesDiv.style.display = 'none';
         fetchedMetadataCache = null;
         console.log(`Server toggled: useLocalHapi=${useLocalHapi}`);
     });
-
     if (authTypeSelect) {
         authTypeSelect.addEventListener('change', updateAuthInputsUI);
     }
-
     if (validateReferencesCheckbox) {
         validateReferencesCheckbox.addEventListener('change', toggleFetchReferenceBundles);
     } else {
         console.warn("Validate references checkbox not found.");
     }
-
     fetchMetadataButton.addEventListener('click', async () => {
         resourceButtonsContainer.innerHTML = '<span class="text-muted">Fetching...</span>';
         resourceTypesDiv.style.display = 'block';
-        const customUrl = useLocalHapi ? null : fhirServerUrlInput.value.trim().replace(/\/+$/, '');
-
-        if (!useLocalHapi && !customUrl) {
-            fhirServerUrlInput.classList.add('is-invalid');
-            alert('Please enter a valid FHIR server URL.');
-            resourceButtonsContainer.innerHTML = '<span class="text-danger">Error: Custom URL required.</span>';
-            return;
-        }
+        let customUrl = null;
         if (!useLocalHapi) {
+            customUrl = fhirServerUrlInput.value.trim().replace(/\/+$/, ''); // Normalize custom URL
+            if (!customUrl) {
+                fhirServerUrlInput.classList.add('is-invalid');
+                alert('Please enter a valid FHIR server URL.');
+                resourceButtonsContainer.innerHTML = '<span class="text-danger">Error: Custom URL required.</span>';
+                return;
+            }
             try { new URL(customUrl); } catch (_) {
                 fhirServerUrlInput.classList.add('is-invalid');
                 alert('Invalid custom URL format.');
@@ -295,33 +299,32 @@ document.addEventListener('DOMContentLoaded', () => {
             }
         }
         fhirServerUrlInput.classList.remove('is-invalid');
-
         fetchMetadataButton.disabled = true;
         fetchMetadataButton.textContent = 'Fetching...';
-
         try {
-            const fetchUrl = '/fhir/metadata';
+            // Build URL and headers based on the toggle state
+            let fetchUrl;
             const headers = { 'Accept': 'application/fhir+json' };
-            if (!useLocalHapi && customUrl) {
-                headers['X-Target-FHIR-Server'] = customUrl;
-                if (authTypeSelect && authTypeSelect.value !== 'none') {
-                    const authType = authTypeSelect.value;
-                    if (authType === 'bearer' && bearerTokenInput && bearerTokenInput.value) {
-                        headers['Authorization'] = `Bearer ${bearerTokenInput.value}`;
-                    } else if (authType === 'basic' && usernameInput && passwordInput && usernameInput.value && passwordInput.value) {
-                        const credentials = btoa(`${usernameInput.value}:${passwordInput.value}`);
-                        headers['Authorization'] = `Basic ${credentials}`;
-                    }
+            if (useLocalHapi) {
+                if (!localHapiBaseUrl) {
+                    throw new Error("Local HAPI URL not available. Please refresh.");
                 }
-                console.log(`Fetching metadata via proxy with X-Target-FHIR-Server: ${customUrl}`);
+                fetchUrl = `${localHapiBaseUrl}/metadata`; // localHapiBaseUrl is already normalized
+                console.log(`Fetching metadata directly from local URL: ${fetchUrl}`);
             } else {
-                console.log("Fetching metadata via proxy for local HAPI server");
+                fetchUrl = `${customUrl}/metadata`;
+                // Add authentication headers for the direct request to the custom server
+                const authType = authTypeSelect.value;
+                if (authType === 'bearer' && document.getElementById('bearerToken') && document.getElementById('bearerToken').value) {
+                    headers['Authorization'] = `Bearer ${document.getElementById('bearerToken').value}`;
+                } else if (authType === 'basic' && usernameInput && passwordInput && usernameInput.value && passwordInput.value) {
+                    const credentials = btoa(`${usernameInput.value}:${passwordInput.value}`);
+                    headers['Authorization'] = `Basic ${credentials}`;
+                }
+                console.log(`Fetching metadata directly from custom URL: ${fetchUrl}`);
             }
-            console.log(`Proxy Fetch URL: ${fetchUrl}`);
-            console.log(`Request Headers sent TO PROXY: ${JSON.stringify(headers)}`);
-
+            console.log(`Request Headers sent: ${JSON.stringify(headers)}`);
             const response = await fetch(fetchUrl, { method: 'GET', headers: headers });
-
             if (!response.ok) {
                 let errorText = `Request failed with status ${response.status} ${response.statusText}`;
                 try { const errorBody = await response.text(); errorText += ` - Body: ${errorBody.substring(0, 200)}...`; } catch (e) {}
@@ -331,7 +334,6 @@ document.addEventListener('DOMContentLoaded', () => {
             const data = await response.json();
             console.log("Metadata received:", JSON.stringify(data, null, 2).substring(0, 500));
             fetchedMetadataCache = data;
-
             const resourceTypes = data.rest?.[0]?.resource?.map(r => r.type)?.filter(Boolean) || [];
             resourceButtonsContainer.innerHTML = '';
             if (!resourceTypes.length) {
@@ -362,7 +364,6 @@ document.addEventListener('DOMContentLoaded', () => {
             fetchMetadataButton.textContent = 'Fetch Metadata';
         }
     });
-
     retrieveForm.addEventListener('submit', async (e) => {
         e.preventDefault();
         const spinner = retrieveButton.querySelector('.spinner-border');
@@ -373,7 +374,6 @@ document.addEventListener('DOMContentLoaded', () => {
         downloadRetrieveButton.style.display = 'none';
         retrieveZipPath = null;
         retrieveConsole.innerHTML = `<div>${new Date().toLocaleTimeString()} [INFO] Starting bundle retrieval...</div>`;
-
         const selectedResources = Array.from(resourceButtonsContainer.querySelectorAll('.btn.active')).map(btn => btn.dataset.resource);
         if (!selectedResources.length) {
             alert('Please select at least one resource type.');
@@ -382,12 +382,20 @@ document.addEventListener('DOMContentLoaded', () => {
             if (icon) icon.style.display = 'inline-block';
             return;
         }
-
+        const currentFhirServerUrl = useLocalHapi ? localHapiBaseUrl : fhirServerUrlInput.value.trim().replace(/\/+$/, '');
+        if (!currentFhirServerUrl) {
+            alert('FHIR Server URL is required.');
+            fhirServerUrlInput.classList.add('is-invalid');
+            retrieveButton.disabled = false;
+            if (spinner) spinner.style.display = 'none';
+            if (icon) icon.style.display = 'inline-block';
+            return;
+        }
         const formData = new FormData();
         const csrfTokenInput = retrieveForm.querySelector('input[name="csrf_token"]');
         if (csrfTokenInput) formData.append('csrf_token', csrfTokenInput.value);
         selectedResources.forEach(res => formData.append('resources', res));
-
+        formData.append('fhir_server_url', currentFhirServerUrl);
         if (validateReferencesCheckbox) {
             formData.append('validate_references', validateReferencesCheckbox.checked ? 'true' : 'false');
         }
@@ -400,31 +408,19 @@ document.addEventListener('DOMContentLoaded', () => {
         } else {
             formData.append('fetch_reference_bundles', 'false');
         }
-
-        const currentFhirServerUrl = useLocalHapi ? '/fhir' : fhirServerUrlInput.value.trim();
-        if (!useLocalHapi && !currentFhirServerUrl) {
-            alert('Custom FHIR Server URL is required.');
-            fhirServerUrlInput.classList.add('is-invalid');
-            retrieveButton.disabled = false;
-            if (spinner) spinner.style.display = 'none';
-            if (icon) icon.style.display = 'inline-block';
-            return;
-        }
-        formData.append('fhir_server_url', currentFhirServerUrl);
-
-        // Add authentication fields for custom URL
         if (!useLocalHapi && authTypeSelect) {
             const authType = authTypeSelect.value;
             formData.append('auth_type', authType);
-            if (authType === 'bearer' && bearerTokenInput) {
-                if (!bearerTokenInput.value) {
+            if (authType === 'bearer') {
+                const bearerToken = document.getElementById('bearerToken').value.trim();
+                if (!bearerToken) {
                     alert('Please enter a Bearer Token.');
                     retrieveButton.disabled = false;
                     if (spinner) spinner.style.display = 'none';
                     if (icon) icon.style.display = 'inline-block';
                     return;
                 }
-                formData.append('bearer_token', bearerTokenInput.value);
+                formData.append('bearer_token', bearerToken);
             } else if (authType === 'basic' && usernameInput && passwordInput) {
                 if (!usernameInput.value || !passwordInput.value) {
                     alert('Please enter both Username and Password for Basic Authentication.');
@@ -437,24 +433,20 @@ document.addEventListener('DOMContentLoaded', () => {
                 formData.append('password', passwordInput.value);
             }
         }
-
         const headers = {
             'Accept': 'application/x-ndjson',
             'X-CSRFToken': csrfTokenInput ? csrfTokenInput.value : '',
             'X-API-Key': apiKey
         };
         console.log(`Submitting retrieve request. Server: ${currentFhirServerUrl}, ValidateRefs: ${formData.get('validate_references')}, FetchRefBundles: ${formData.get('fetch_reference_bundles')}, AuthType: ${formData.get('auth_type')}`);
-
         try {
             const response = await fetch('/api/retrieve-bundles', { method: 'POST', headers: headers, body: formData });
-
             if (!response.ok) {
                 const errorData = await response.json().catch(() => ({ message: 'Failed to parse error response.' }));
                 throw new Error(`HTTP ${response.status}: ${errorData.message || 'Unknown error during retrieval'}`);
             }
             retrieveZipPath = response.headers.get('X-Zip-Path');
             console.log(`Received X-Zip-Path: ${retrieveZipPath}`);
-
             const reader = response.body.getReader();
             const decoder = new TextDecoder();
             let buffer = '';
@@ -476,13 +468,11 @@ document.addEventListener('DOMContentLoaded', () => {
                         else if (data.type === 'success') { prefix = '[SUCCESS]'; messageClass = 'text-success'; }
                         else if (data.type === 'progress') { prefix = '[PROGRESS]'; messageClass = 'text-light'; }
                         else if (data.type === 'complete') { prefix = '[COMPLETE]'; messageClass = 'text-primary'; }
-
                         const messageDiv = document.createElement('div');
                         messageDiv.className = messageClass;
                         messageDiv.innerHTML = `${timestamp} ${prefix} ${sanitizeText(data.message)}`;
                         retrieveConsole.appendChild(messageDiv);
                         retrieveConsole.scrollTop = retrieveConsole.scrollHeight;
-
                         if (data.type === 'complete' && retrieveZipPath) {
                             const completeData = data.data || {};
                             const bundlesFound = (completeData.total_initial_bundles > 0) || (completeData.fetched_individual_references > 0) || (completeData.fetched_type_bundles > 0);
@@ -500,7 +490,6 @@ document.addEventListener('DOMContentLoaded', () => {
                 }
             }
             if (buffer.trim()) { /* Handle final buffer */ }
-
         } catch (e) {
             console.error('Retrieval error:', e);
             const ts = new Date().toLocaleTimeString();
@@ -512,20 +501,17 @@ document.addEventListener('DOMContentLoaded', () => {
             if (icon) icon.style.display = 'inline-block';
         }
     });
-
     downloadRetrieveButton.addEventListener('click', () => {
         if (retrieveZipPath) {
             const filename = retrieveZipPath.split('/').pop() || 'retrieved_bundles.zip';
             const downloadUrl = `/tmp/${filename}`;
             console.log(`Attempting to download ZIP from Flask endpoint: ${downloadUrl}`);
-
             const link = document.createElement('a');
             link.href = downloadUrl;
             link.download = 'retrieved_bundles.zip';
             document.body.appendChild(link);
             link.click();
             document.body.removeChild(link);
-
             setTimeout(() => {
                 const csrfToken = retrieveForm.querySelector('input[name="csrf_token"]')?.value || '';
                 fetch('/clear-session', { method: 'POST', headers: { 'X-CSRFToken': csrfToken }})
@@ -543,7 +529,6 @@ document.addEventListener('DOMContentLoaded', () => {
             alert("Download error: No file path available.");
         }
     });
-
     splitForm.addEventListener('submit', async (e) => {
         e.preventDefault();
         const spinner = splitButton.querySelector('.spinner-border');
@@ -554,13 +539,10 @@ document.addEventListener('DOMContentLoaded', () => {
         downloadSplitButton.style.display = 'none';
         splitZipPath = null;
         splitConsole.innerHTML = `<div>${new Date().toLocaleTimeString()} [INFO] Starting bundle splitting...</div>`;
-
         const formData = new FormData();
         const csrfTokenInput = splitForm.querySelector('input[name="csrf_token"]');
         if (csrfTokenInput) formData.append('csrf_token', csrfTokenInput.value);
-
         const bundleSource = Array.from(bundleSourceRadios).find(radio => radio.checked)?.value;
-
         if (bundleSource === 'upload') {
             if (!splitBundleZipInput || splitBundleZipInput.files.length === 0) {
                 alert('Please select a ZIP file to upload for splitting.');
@@ -592,16 +574,13 @@ document.addEventListener('DOMContentLoaded', () => {
             if (icon) icon.style.display = 'inline-block';
             return;
         }
-
         const headers = {
             'Accept': 'application/x-ndjson',
             'X-CSRFToken': csrfTokenInput ? csrfTokenInput.value : '',
             'X-API-Key': apiKey
         };
-
         try {
             const response = await fetch('/api/split-bundles', { method: 'POST', headers: headers, body: formData });
-
             if (!response.ok) {
                 const errorMsg = await response.text();
                 let detail = errorMsg;
@@ -610,7 +589,6 @@ document.addEventListener('DOMContentLoaded', () => {
             }
             splitZipPath = response.headers.get('X-Zip-Path');
             console.log(`Received X-Zip-Path for split: ${splitZipPath}`);
-
             const reader = response.body.getReader();
             const decoder = new TextDecoder();
             let buffer = '';
@@ -643,7 +621,6 @@ document.addEventListener('DOMContentLoaded', () => {
                 }
             }
             if (buffer.trim()) { /* Handle final buffer */ }
-
         } catch (e) {
             console.error('Splitting error:', e);
             const ts = new Date().toLocaleTimeString();
@@ -655,7 +632,6 @@ document.addEventListener('DOMContentLoaded', () => {
             if (icon) icon.style.display = 'inline-block';
         }
     });
-
     downloadSplitButton.addEventListener('click', () => {
         if (splitZipPath) {
             const filename = splitZipPath.split('/').pop() || 'split_resources.zip';
@@ -680,10 +656,9 @@ document.addEventListener('DOMContentLoaded', () => {
             alert("Download error: No file path available.");
         }
     });
-
     // --- Initial Setup Calls ---
     updateBundleSourceUI();
-    updateServerToggleUI();
+    fetchLocalUrlAndSetUI();
     toggleFetchReferenceBundles();
 });
 </script>

templates/validate_sample.html

@@ -1,4 +1,3 @@
-<!-- templates/validate_sample.html -->
 {% extends "base.html" %}
 
 {% block content %}
@@ -7,14 +6,15 @@
     <h1 class="display-5 fw-bold text-body-emphasis">Validate FHIR Sample</h1>
     <div class="col-lg-6 mx-auto">
         <p class="lead mb-4">
-            Validate a FHIR resource or bundle against a selected Implementation Guide. (ALPHA - TEST Fhir pathing is complex and the logic is WIP, please report anomalies you find in Github issues alongside your sample json REMOVE PHI)
+            Validate a FHIR resource or bundle against a selected Implementation Guide.
         </p>
-          <!-----------------------------------------------------------------remove the buttons-----------------------------------------------------
-        <div class="d-grid gap-2 d-sm-flex justify-content-sm-center">
-            <a href="{{ url_for('index') }}" class="btn btn-primary btn-lg px-4 gap-3">Back to Home</a>
-            <a href="{{ url_for('view_igs') }}" class="btn btn-outline-secondary btn-lg px-4">Manage FHIR Packages</a>
-        </div>
-          ----------------------------------------------------------------remove the buttons----------------------------------------------------->
+    </div>
+</div>
+
+<div id="spinner-overlay" class="d-none position-fixed top-0 start-0 w-100 h-100 bg-dark bg-opacity-50 d-flex align-items-center justify-content-center" style="z-index: 1050;">
+    <div class="text-center text-white">
+        <div id="spinner-animation" style="width: 200px; height: 200px;"></div>
+        <p class="mt-3" id="spinner-message">Waiting, don't leave this page...</p>
     </div>
 </div>
 
@@ -22,8 +22,9 @@
     <div class="card">
         <div class="card-header">Validation Form</div>
         <div class="card-body">
-            <form id="validationForm">
-                {{ form.hidden_tag() }}
+            <form id="validationForm" method="POST" action="/api/validate">
+                {{ form.csrf_token }}
+
                 <div class="mb-3">
                     <small class="form-text text-muted">
                         Select a package from the list below or enter a new one (e.g., <code>hl7.fhir.us.core</code>).
@@ -46,6 +47,7 @@
                         <div class="text-danger">{{ error }}</div>
                     {% endfor %}
                 </div>
+
                 <div class="mb-3">
                     <label for="{{ form.version.id }}" class="form-label">Package Version</label>
                     {{ form.version(class="form-control", id=form.version.id) }}
@@ -53,145 +55,404 @@
                         <div class="text-danger">{{ error }}</div>
                     {% endfor %}
                 </div>
+
+                <hr class="my-4">
+
+                <!-- New Fields from ValidationForm -->
                 <div class="mb-3">
-                    <label for="{{ form.include_dependencies.id }}" class="form-label">Include Dependencies</label>
-                    <div class="form-check">
-                        {{ form.include_dependencies(class="form-check-input") }}
-                        {{ form.include_dependencies.label(class="form-check-label") }}
+                    <label for="fhir_resource" class="form-label">FHIR Resource (JSON or XML)</label>
+                    {{ form.fhir_resource(class="form-control", rows=10, placeholder="Paste your FHIR JSON here...") }}
+                </div>
+
+                <div class="row g-3">
+                    <div class="col-md-6">
+                        <label for="fhir_version" class="form-label">FHIR Version</label>
+                        {{ form.fhir_version(class="form-select") }}
                     </div>
                 </div>
-                <div class="mb-3">
-                    <label for="{{ form.mode.id }}" class="form-label">Validation Mode</label>
-                    {{ form.mode(class="form-select") }}
+
+                <hr class="my-4">
+
+                <h5>Validation Flags</h5>
+                <div class="row g-3">
+                    <div class="col-md-6">
+                        <div class="form-check">
+                            {{ form.do_native(class="form-check-input") }}
+                            <label class="form-check-label" for="do_native">{{ form.do_native.label }}</label>
+                        </div>
+                        <div class="form-check">
+                            {{ form.hint_about_must_support(class="form-check-input") }}
+                            <label class="form-check-label" for="hint_about_must_support">{{ form.hint_about_must_support.label }}</label>
+                        </div>
+                        <div class="form-check">
+                            {{ form.assume_valid_rest_references(class="form-check-input") }}
+                            <label class="form-check-label" for="assume_valid_rest_references">{{ form.assume_valid_rest_references.label }}</label>
+                        </div>
+                        <div class="form-check">
+                            {{ form.no_extensible_binding_warnings(class="form-check-input") }}
+                            <label class="form-check-label" for="no_extensible_binding_warnings">{{ form.no_extensible_binding_warnings.label }}</label>
+                        </div>
+                    </div>
+                    <div class="col-md-6">
+                        <div class="form-check">
+                            {{ form.show_times(class="form-check-input") }}
+                            <label class="form-check-label" for="show_times">{{ form.show_times.label }}</label>
+                        </div>
+                        <div class="form-check">
+                            {{ form.allow_example_urls(class="form-check-input") }}
+                            <label class="form-check-label" for="allow_example_urls">{{ form.allow_example_urls.label }}</label>
+                        </div>
+                        <div class="form-check">
+                            {{ form.check_ips_codes(class="form-check-input") }}
+                            <label class="form-check-label" for="check_ips_codes">{{ form.check_ips_codes.label }}</label>
+                        </div>
+                        <div class="form-check">
+                            {{ form.allow_any_extensions(class="form-check-input") }}
+                            <label class="form-check-label" for="allow_any_extensions">{{ form.allow_any_extensions.label }}</label>
+                        </div>
+                        <div class="form-check">
+                            {{ form.tx_routing(class="form-check-input") }}
+                            <label class="form-check-label" for="tx_routing">{{ form.tx_routing.label }}</label>
+                        </div>
+                    </div>
                 </div>
-                <div class="mb-3">
-                    <label for="{{ form.sample_input.id }}" class="form-label">Sample FHIR Resource/Bundle (JSON)</label>
-                    {{ form.sample_input(class="form-control", rows=10, placeholder="Paste your FHIR JSON here...") }}
-                    {% for error in form.sample_input.errors %}
-                        <div class="text-danger">{{ error }}</div>
-                    {% endfor %}
+
+                <hr class="my-4">
+
+                <h5>Other Settings</h5>
+                <div class="row g-3">
+                    <div class="col-md-6">
+                        <label for="profiles" class="form-label">{{ form.profiles.label }}</label>
+                        {{ form.profiles(class="form-control") }}
+                        <small class="form-text text-muted">Comma-separated URLs, e.g., url1,url2</small>
+                    </div>
+                    <div class="col-md-6">
+                        <label for="extensions" class="form-label">{{ form.extensions.label }}</label>
+                        {{ form.extensions(class="form-control") }}
+                        <small class="form-text text-muted">Comma-separated URLs, e.g., url1,url2</small>
+                    </div>
+                    <div class="col-md-6">
+                        <label for="terminology_server" class="form-label">{{ form.terminology_server.label }}</label>
+                        {{ form.terminology_server(class="form-control") }}
+                        <small class="form-text text-muted">e.g., http://tx.fhir.org</small>
+                    </div>
+                    <div class="col-md-6">
+                        <label for="snomed_ct_version" class="form-label">{{ form.snomed_ct_version.label }}</label>
+                        {{ form.snomed_ct_version(class="form-select") }}
+                        <small class="form-text text-muted">Select a SNOMED CT edition.</small>
+                    </div>
+                </div>
+
+                <div class="mt-4 text-center">
+                    <button type="submit" id="validateButton" class="btn btn-primary btn-lg">
+                        Validate Resource
+                    </button>
+                    <button type="button" id="clearResultsButton" class="btn btn-secondary btn-lg d-none">
+                        Clear Results
+                    </button>
                 </div>
-                <button type="button" class="btn btn-primary" id="validateButton">Validate</button>
             </form>
         </div>
     </div>
-
-    <div class="card mt-4" id="validationResult" style="display: none;">
-        <div class="card-header">Validation Report</div>
+    
+    <div id="validationResult" class="card mt-4" style="display: none;">
+        <div class="card-header">Validation Results</div>
         <div class="card-body" id="validationContent">
-            <!-- Results will be populated dynamically -->
+            <!-- Results will be displayed here -->
         </div>
     </div>
 </div>
 
+<script src="{{ url_for('static', filename='js/lottie.min.js') }}"></script>
 <script>
-document.addEventListener('DOMContentLoaded', function() {
-    const packageSelect = document.getElementById('packageSelect');
-    const packageNameInput = document.getElementById('{{ form.package_name.id }}');
-    const versionInput = document.getElementById('{{ form.version.id }}');
-    const validateButton = document.getElementById('validateButton');
-    const sampleInput = document.getElementById('{{ form.sample_input.id }}');
-    const validationResult = document.getElementById('validationResult');
-    const validationContent = document.getElementById('validationContent');
-
-    // Debug DOM elements
-    console.log('Package Select:', packageSelect ? 'Found' : 'Missing');
-    console.log('Package Name Input:', packageNameInput ? 'Found' : 'Missing');
-    console.log('Version Input:', versionInput ? 'Found' : 'Missing');
-
-    // Update package_name and version fields from dropdown
-    function updatePackageFields(select) {
-        const value = select.value;
-        console.log('Selected package:', value);
-        if (!packageNameInput || !versionInput) {
-            console.error('Input fields not found');
-            return;
+    // --- Global Variables and Helper Functions ---
+    let currentLottieAnimation = null;
+    let pollInterval = null;
+    const spinnerOverlay = document.getElementById('spinner-overlay');
+    const spinnerMessage = document.getElementById('spinner-message');
+    const spinnerContainer = document.getElementById('spinner-animation');
+    const perPage = 10;
+    
+    // Function to load the Lottie animation based on theme
+    function loadLottieAnimation(theme) {
+        if (currentLottieAnimation) {
+            currentLottieAnimation.destroy();
+            currentLottieAnimation = null;
         }
-        if (value) {
-            const [name, version] = value.split('#');
-            if (name && version) {
-                packageNameInput.value = name;
-                versionInput.value = version;
-                console.log('Updated fields:', { packageName: name, version });
+        const animationPath = (theme === 'dark')
+            ? '{{ url_for('static', filename='animations/Validation abstract.json') }}'
+            : '{{ url_for('static', filename='animations/Validation abstract.json') }}';
+        
+        try {
+            currentLottieAnimation = lottie.loadAnimation({
+                container: spinnerContainer,
+                renderer: 'svg',
+                loop: true,
+                autoplay: true,
+                path: animationPath
+            });
+        } catch(lottieError) {
+            console.error("Error loading Lottie animation:", lottieError);
+        }
+    }
+
+    // Function to show/hide the spinner with a custom message
+    function toggleSpinner(show, message = "Running validator...") {
+        if (show) {
+            spinnerMessage.textContent = message;
+            spinnerOverlay.classList.remove('d-none');
+            const currentTheme = document.documentElement.getAttribute('data-theme') === 'dark' ? 'dark' : 'light';
+            loadLottieAnimation(currentTheme);
+        } else {
+            spinnerOverlay.classList.add('d-none');
+            if (currentLottieAnimation) {
+                currentLottieAnimation.destroy();
+                currentLottieAnimation = null;
+            }
+        }
+    }
+
+    // --- Frontend logic starts here
+    document.addEventListener('DOMContentLoaded', function() {
+        const form = document.getElementById('validationForm');
+        const validateButton = document.getElementById('validateButton');
+        const clearResultsButton = document.getElementById('clearResultsButton');
+        const validationResult = document.getElementById('validationResult');
+        const validationContent = document.getElementById('validationContent');
+        const csrfToken = document.querySelector('input[name="csrf_token"]').value;
+        const packageSelect = document.getElementById('packageSelect');
+        const packageNameInput = document.getElementById('{{ form.package_name.id }}');
+        const versionInput = document.getElementById('{{ form.version.id }}');
+        const fhirResourceInput = document.getElementById('fhir_resource');
+        
+        // Function to update package fields when a package is selected from the dropdown
+        function updatePackageFields(select) {
+            const value = select.value;
+            if (!packageNameInput || !versionInput) return;
+            if (value) {
+                const [name, version] = value.split('#');
+                if (name && version) {
+                    packageNameInput.value = name;
+                    versionInput.value = version;
+                } else {
+                    packageNameInput.value = '';
+                    versionInput.value = '';
+                }
             } else {
-                console.warn('Invalid package format:', value);
                 packageNameInput.value = '';
                 versionInput.value = '';
             }
-        } else {
-            packageNameInput.value = '';
-            versionInput.value = '';
-            console.log('Cleared fields: no package selected');
         }
-    }
-
-    // Initialize dropdown based on form values
-    if (packageNameInput && versionInput && packageNameInput.value && versionInput.value) {
-        const currentValue = `${packageNameInput.value}#${versionInput.value}`;
-        if (packageSelect.querySelector(`option[value="${currentValue}"]`)) {
-            packageSelect.value = currentValue;
-            console.log('Initialized dropdown with:', currentValue);
+        
+        // Sanitize text to prevent XSS
+        function sanitizeText(text) {
+            const div = document.createElement('div');
+            div.textContent = text;
+            return div.innerHTML;
         }
-    }
 
-    // Debug dropdown options
-    console.log('Dropdown options:', Array.from(packageSelect.options).map(opt => opt.value));
-
-    // Attach event listener for package selection
-    if (packageSelect) {
-        packageSelect.addEventListener('change', function() {
-            updatePackageFields(this);
-        });
-    }
-
-    // Client-side JSON validation preview
-    if (sampleInput) {
-        sampleInput.addEventListener('input', function() {
-            try {
-                if (this.value.trim()) {
-                    JSON.parse(this.value);
-                    this.classList.remove('is-invalid');
-                    this.classList.add('is-valid');
-                } else {
-                    this.classList.remove('is-valid', 'is-invalid');
-                }
-            } catch (e) {
-                this.classList.remove('is-valid');
-                this.classList.add('is-invalid');
+        // Tidy up the display by paginating results
+        function renderResultList(container, items, title, isWarnings = false) {
+            container.innerHTML = '';
+            if (items.length === 0) {
+                return;
             }
-        });
-    }
 
-    // Check HAPI server status
-    function checkHapiStatus() {
-        return fetch('/fhir/metadata', { method: 'GET' })
-            .then(response => {
-                if (!response.ok) {
-                    throw new Error('HAPI server unavailable');
-                }
-                return true;
-            })
-            .catch(error => {
-                console.warn('HAPI status check failed:', error.message);
-                validationContent.innerHTML = '<div class="alert alert-warning">HAPI server unavailable; using local validation.</div>';
-                return false;
+            const wrapper = document.createElement('div');
+            const listId = `list-${title.toLowerCase()}`;
+
+            let initialItems = items.slice(0, perPage);
+            let remainingItems = items.slice(perPage);
+
+            const titleElement = document.createElement('h5');
+            titleElement.textContent = title;
+            wrapper.appendChild(titleElement);
+            
+            const ul = document.createElement('ul');
+            ul.className = 'list-unstyled';
+            initialItems.forEach(item => {
+                const li = document.createElement('li');
+                li.innerHTML = `
+                    <div class="alert alert-${isWarnings ? 'warning' : 'danger'}">
+                        ${sanitizeText(typeof item === 'string' ? item : item.message || item.issue)}
+                        ${isWarnings && (item.issue && item.issue.includes('Must Support')) ? ' <i class="bi bi-info-circle" title="This element is marked as Must Support in the profile."></i>' : ''}
+                    </div>
+                `;
+                ul.appendChild(li);
             });
-    }
+            wrapper.appendChild(ul);
 
-    // Sanitize text to prevent XSS
-    function sanitizeText(text) {
-        const div = document.createElement('div');
-        div.textContent = text;
-        return div.innerHTML;
-    }
+            if (remainingItems.length > 0) {
+                const toggleButton = document.createElement('a');
+                toggleButton.href = '#';
+                toggleButton.className = 'btn btn-sm btn-link text-decoration-none';
+                toggleButton.textContent = `Show More (${remainingItems.length} more)`;
+                
+                const remainingUl = document.createElement('ul');
+                remainingUl.className = 'list-unstyled d-none';
+                remainingItems.forEach(item => {
+                    const li = document.createElement('li');
+                    li.innerHTML = `
+                        <div class="alert alert-${isWarnings ? 'warning' : 'danger'}">
+                            ${sanitizeText(typeof item === 'string' ? item : item.message || item.issue)}
+                            ${isWarnings && (item.issue && item.issue.includes('Must Support')) ? ' <i class="bi bi-info-circle" title="This element is marked as Must Support in the profile."></i>' : ''}
+                        </div>
+                    `;
+                    remainingUl.appendChild(li);
+                });
 
-    // Validate button handler
-    if (validateButton) {
-        validateButton.addEventListener('click', function() {
-            const packageName = packageNameInput.value;
-            const version = versionInput.value;
-            const sampleData = sampleInput.value.trim();
-            const includeDependencies = document.getElementById('{{ form.include_dependencies.id }}').checked;
+                toggleButton.addEventListener('click', (e) => {
+                    e.preventDefault();
+                    if (remainingUl.classList.contains('d-none')) {
+                        remainingUl.classList.remove('d-none');
+                        toggleButton.textContent = 'Show Less';
+                    } else {
+                        remainingUl.classList.add('d-none');
+                        toggleButton.textContent = `Show More (${remainingItems.length} more)`;
+                    }
+                });
+                wrapper.appendChild(toggleButton);
+                wrapper.appendChild(remainingUl);
+            }
+            container.appendChild(wrapper);
+        }
+
+        function displayFinalReport(data) {
+            validationContent.innerHTML = '';
+            let hasContent = false;
+            
+            clearResultsButton.classList.remove('d-none');
+
+            if (data.file_paths) {
+                // Use the paths returned from the server to create download links
+                const jsonFileName = data.file_paths.json.split('/').pop();
+                const htmlFileName = data.file_paths.html.split('/').pop();
+                const downloadDiv = document.createElement('div');
+                downloadDiv.className = 'alert alert-info d-flex justify-content-between align-items-center';
+                downloadDiv.innerHTML = `
+                    <span>Download Raw Reports:</span>
+                    <div>
+                        <a href="/download/${jsonFileName}" class="btn btn-sm btn-secondary me-2" download>Download JSON</a>
+                        <a href="/download/${htmlFileName}" class="btn btn-sm btn-secondary" download>Download HTML</a>
+                    </div>
+                `;
+                validationContent.appendChild(downloadDiv);
+                hasContent = true;
+            }
+
+            if (data.errors && data.errors.length > 0) {
+                hasContent = true;
+                const errorContainer = document.createElement('div');
+                renderResultList(errorContainer, data.errors, 'Errors');
+                validationContent.appendChild(errorContainer);
+            }
+
+            if (data.warnings && data.warnings.length > 0) {
+                hasContent = true;
+                const warningContainer = document.createElement('div');
+                renderResultList(warningContainer, data.warnings, 'Warnings', true);
+                validationContent.appendChild(warningContainer);
+            }
+
+            if (data.results) {
+                hasContent = true;
+                const resultsDiv = document.createElement('div');
+                resultsDiv.innerHTML = '<h5>Detailed Results</h5>';
+                let index = 0;
+                for (const [resourceId, result] of Object.entries(data.results)) {
+                    const collapseId = `result-collapse-${index++}`;
+                    resultsDiv.innerHTML += `
+                        <div class="card mb-2">
+                            <div class="card-header" role="button" data-bs-toggle="collapse" data-bs-target="#${collapseId}" aria-expanded="false" aria-controls="${collapseId}">
+                                <h6 class="mb-0">${sanitizeText(resourceId)}</h6>
+                                <p class="mb-0"><strong>Valid:</strong> ${result.valid ? 'Yes' : 'No'}</p>
+                            </div>
+                            <div id="${collapseId}" class="collapse">
+                                <div class="card-body">
+                                    ${result.details && result.details.length > 0 ? `
+                                        <ul>
+                                            ${result.details.map(d => `
+                                                <li class="${d.severity === 'error' ? 'text-danger' : d.severity === 'warning' ? 'text-warning' : 'text-info'}">
+                                                    ${sanitizeText(d.issue)}
+                                                    ${d.description && d.description !== d.issue ? `<br><small class="text-muted">${sanitizeText(d.description)}</small>` : ''}
+                                                </li>
+                                            `).join('')}
+                                        </ul>
+                                    ` : '<p>No additional details.</p>'}
+                                </div>
+                            </div>
+                        </div>
+                    `;
+                }
+                validationContent.appendChild(resultsDiv);
+            }
+
+            if (data.summary) {
+                const summaryDiv = document.createElement('div');
+                summaryDiv.className = 'alert alert-info';
+                summaryDiv.innerHTML = `
+                    <h5>Summary</h5>
+                    <p>Valid: ${data.valid ? 'Yes' : 'No'}</p>
+                    <p>Errors: ${data.summary.error_count || 0}, Warnings: ${data.summary.warning_count || 0}</p>
+                `;
+                validationContent.appendChild(summaryDiv);
+                hasContent = true;
+            }
+
+            if (!hasContent && data.valid) {
+                validationContent.innerHTML = '<div class="alert alert-success">Validation passed with no errors or warnings.</div>';
+            }
+
+            document.querySelectorAll('[data-bs-toggle="collapse"]').forEach(el => {
+                el.addEventListener('click', () => {
+                    const target = document.querySelector(el.getAttribute('data-bs-target'));
+                    target.classList.toggle('show');
+                });
+            });
+            document.querySelectorAll('[data-bs-toggle="tooltip"]').forEach(el => {
+                new bootstrap.Tooltip(el);
+            });
+        }
+        
+        function checkValidationStatus(taskId) {
+            fetch(`/api/check-validation-status/${taskId}`)
+                .then(response => {
+                    if (response.status === 202) {
+                        console.log('Validation still in progress...');
+                        return null; 
+                    } else if (response.status === 200) {
+                        clearInterval(pollInterval);
+                        toggleSpinner(false);
+                        return response.json();
+                    } else {
+                        clearInterval(pollInterval);
+                        toggleSpinner(false);
+                        return response.json().then(errorData => {
+                            throw new Error(errorData.message);
+                        });
+                    }
+                })
+                .then(data => {
+                    if (data && data.status === 'complete') {
+                        validationResult.style.display = 'block';
+                        displayFinalReport(data.result);
+                    }
+                })
+                .catch(error => {
+                    clearInterval(pollInterval);
+                    toggleSpinner(false);
+                    console.error('Validation failed during polling:', error);
+                    validationResult.style.display = 'block';
+                    validationContent.innerHTML = `<div class="alert alert-danger">An unexpected error occurred during validation: ${sanitizeText(error.message)}</div>`;
+                });
+        }
+        
+        function runBlockingValidation(e) {
+            e.preventDefault(); // This is the crucial line to prevent default form submission
+            const packageName = document.getElementById('{{ form.package_name.id }}').value;
+            const version = document.getElementById('{{ form.version.id }}').value;
+            const sampleData = document.getElementById('fhir_resource').value.trim();
+            const csrfToken = document.querySelector('input[name="csrf_token"]').value;
 
             if (!packageName || !version) {
                 validationResult.style.display = 'block';
@@ -201,176 +462,126 @@ document.addEventListener('DOMContentLoaded', function() {
 
             if (!sampleData) {
                 validationResult.style.display = 'block';
-                validationContent.innerHTML = '<div class="alert alert-danger">Please provide FHIR sample JSON.</div>';
+                validationContent.innerHTML = '<div class="alert alert-danger">Please provide FHIR sample JSON or XML.</div>';
                 return;
             }
+            
+            toggleSpinner(true, "Running FHIR Validator (This may take up to 5 minutes on the first run).");
+            
+            // Collect all form data including the new fields
+            const data = {
+                package_name: packageName,
+                version: version,
+                fhir_resource: sampleData,
+                fhir_version: document.getElementById('fhir_version').value,
+                do_native: document.getElementById('do_native').checked,
+                hint_about_must_support: document.getElementById('hint_about_must_support').checked,
+                assume_valid_rest_references: document.getElementById('assume_valid_rest_references').checked,
+                no_extensible_binding_warnings: document.getElementById('no_extensible_binding_warnings').checked,
+                show_times: document.getElementById('show_times').checked,
+                allow_example_urls: document.getElementById('allow_example_urls').checked,
+                check_ips_codes: document.getElementById('check_ips_codes').checked,
+                allow_any_extensions: document.getElementById('allow_any_extensions').checked,
+                tx_routing: document.getElementById('tx_routing').checked,
+                snomed_ct_version: document.getElementById('snomed_ct_version').value,
+                profiles: document.getElementById('profiles').value,
+                extensions: document.getElementById('extensions').value,
+                terminology_server: document.getElementById('terminology_server').value
+            };
 
-            try {
-                JSON.parse(sampleData);
-            } catch (e) {
-                validationResult.style.display = 'block';
-                validationContent.innerHTML = '<div class="alert alert-danger">Invalid JSON: ' + sanitizeText(e.message) + '</div>';
-                return;
-            }
-
-            validationResult.style.display = 'block';
-            validationContent.innerHTML = '<div class="text-center py-3"><div class="spinner-border text-primary" role="status"><span class="visually-hidden">Validating...</span></div></div>';
-
-            // Check HAPI status before validation
-            checkHapiStatus().then(() => {
-                console.log('Sending request to /api/validate-sample with:', {
-                    package_name: packageName,
-                    version: version,
-                    include_dependencies: includeDependencies,
-                    sample_data_length: sampleData.length
-                });
-
-                fetch('/api/validate-sample', {
-                    method: 'POST',
-                    headers: {
-                        'Content-Type': 'application/json',
-                        'X-CSRFToken': '{{ form.csrf_token._value() }}'
-                    },
-                    body: JSON.stringify({
-                        package_name: packageName,
-                        version: version,
-                        include_dependencies: includeDependencies,
-                        sample_data: sampleData
-                    })
-                })
-                .then(response => {
-                    console.log('Server response status:', response.status, response.statusText);
-                    if (!response.ok) {
-                        return response.text().then(text => {
-                            console.error('Server response text:', text.substring(0, 200) + (text.length > 200 ? '...' : ''));
-                            throw new Error(`HTTP error ${response.status}: ${text.substring(0, 100)}...`);
-                        });
-                    }
+            fetch('/api/validate', {
+                method: 'POST',
+                headers: {
+                    'Content-Type': 'application/json',
+                    'X-CSRFToken': csrfToken
+                },
+                body: JSON.stringify(data)
+            })
+            .then(response => {
+                if (response.status === 202) {
                     return response.json();
-                })
-                .then(data => {
-                    console.log('Validation response:', data);
-                    validationContent.innerHTML = '';
-                    let hasContent = false;
-
-                    // Display profile information
-                    if (data.results) {
-                        const profileDiv = document.createElement('div');
-                        profileDiv.className = 'mb-3';
-                        const profiles = new Set();
-                        Object.values(data.results).forEach(result => {
-                            if (result.profile) profiles.add(result.profile);
-                        });
-                        if (profiles.size > 0) {
-                            profileDiv.innerHTML = `
-                                <h5>Validated Against Profile${profiles.size > 1 ? 's' : ''}</h5>
-                                <ul>
-                                    ${Array.from(profiles).map(p => `<li><a href="${sanitizeText(p)}" target="_blank">${sanitizeText(p.split('/').pop())}</a></li>`).join('')}
-                                </ul>
-                            `;
-                            validationContent.appendChild(profileDiv);
-                            hasContent = true;
-                        }
-                    }
-
-                    // Display errors
-                    if (data.errors && data.errors.length > 0) {
-                        hasContent = true;
-                        const errorDiv = document.createElement('div');
-                        errorDiv.className = 'alert alert-danger';
-                        errorDiv.innerHTML = `
-                            <h5>Errors</h5>
-                            <ul>
-                                ${data.errors.map(e => `<li>${sanitizeText(typeof e === 'string' ? e : e.message)}</li>`).join('')}
-                            </ul>
-                        `;
-                        validationContent.appendChild(errorDiv);
-                    }
-
-                    // Display warnings
-                    if (data.warnings && data.warnings.length > 0) {
-                        hasContent = true;
-                        const warningDiv = document.createElement('div');
-                        warningDiv.className = 'alert alert-warning';
-                        warningDiv.innerHTML = `
-                            <h5>Warnings</h5>
-                            <ul>
-                                ${data.warnings.map(w => {
-                                    const isMustSupport = w.includes('Must Support');
-                                    return `<li>${sanitizeText(typeof w === 'string' ? w : w.message)}${isMustSupport ? ' <i class="bi bi-info-circle" title="This element is marked as Must Support in the profile."></i>' : ''}</li>`;
-                                }).join('')}
-                            </ul>
-                        `;
-                        validationContent.appendChild(warningDiv);
-                    }
-
-                    // Detailed results with collapsible sections
-                    if (data.results) {
-                        hasContent = true;
-                        const resultsDiv = document.createElement('div');
-                        resultsDiv.innerHTML = '<h5>Detailed Results</h5>';
-                        let index = 0;
-                        for (const [resourceId, result] of Object.entries(data.results)) {
-                            const collapseId = `result-collapse-${index++}`;
-                            resultsDiv.innerHTML += `
-                                <div class="card mb-2">
-                                    <div class="card-header" role="button" data-bs-toggle="collapse" data-bs-target="#${collapseId}" aria-expanded="false" aria-controls="${collapseId}">
-                                        <h6 class="mb-0">${sanitizeText(resourceId)}</h6>
-                                        <p class="mb-0"><strong>Valid:</strong> ${result.valid ? 'Yes' : 'No'}</p>
-                                    </div>
-                                    <div id="${collapseId}" class="collapse">
-                                        <div class="card-body">
-                                            ${result.details && result.details.length > 0 ? `
-                                                <ul>
-                                                    ${result.details.map(d => `
-                                                        <li class="${d.severity === 'error' ? 'text-danger' : d.severity === 'warning' ? 'text-warning' : 'text-info'}">
-                                                            ${sanitizeText(d.issue)}
-                                                            ${d.description && d.description !== d.issue ? `<br><small class="text-muted">${sanitizeText(d.description)}</small>` : ''}
-                                                        </li>
-                                                    `).join('')}
-                                                </ul>
-                                            ` : '<p>No additional details.</p>'}
-                                        </div>
-                                    </div>
-                                </div>
-                            `;
-                        }
-                        validationContent.appendChild(resultsDiv);
-                    }
-
-                    // Summary
-                    const summaryDiv = document.createElement('div');
-                    summaryDiv.className = 'alert alert-info';
-                    summaryDiv.innerHTML = `
-                        <h5>Summary</h5>
-                        <p>Valid: ${data.valid ? 'Yes' : 'No'}</p>
-                        <p>Errors: ${data.summary.error_count || 0}, Warnings: ${data.summary.warning_count || 0}</p>
-                    `;
-                    validationContent.appendChild(summaryDiv);
-                    hasContent = true;
-
-                    if (!hasContent && data.valid) {
-                        validationContent.innerHTML = '<div class="alert alert-success">Validation passed with no errors or warnings.</div>';
-                    }
-
-                    // Initialize Bootstrap collapse and tooltips
-                    document.querySelectorAll('[data-bs-toggle="collapse"]').forEach(el => {
-                        el.addEventListener('click', () => {
-                            const target = document.querySelector(el.getAttribute('data-bs-target'));
-                            target.classList.toggle('show');
-                        });
+                } else {
+                    toggleSpinner(false);
+                    return response.json().then(errorData => {
+                        throw new Error(errorData.message);
                     });
-                    document.querySelectorAll('[data-bs-toggle="tooltip"]').forEach(el => {
-                        new bootstrap.Tooltip(el);
-                    });
-                })
-                .catch(error => {
-                    console.error('Validation error:', error);
-                    validationContent.innerHTML = `<div class="alert alert-danger">Error during validation: ${sanitizeText(error.message)}</div>`;
-                });
+                }
+            })
+            .then(data => {
+                if (data.status === 'accepted' && data.task_id) {
+                    pollInterval = setInterval(() => checkValidationStatus(data.task_id), 3000);
+                } else {
+                    toggleSpinner(false);
+                    validationResult.style.display = 'block';
+                    validationContent.innerHTML = `<div class="alert alert-danger">Server response format unexpected.</div>`;
+                }
+            })
+            .catch(error => {
+                clearInterval(pollInterval);
+                toggleSpinner(false);
+                console.error('Validation failed:', error);
+                validationResult.style.display = 'block';
+                validationContent.innerHTML = `<div class="alert alert-danger">An unexpected error occurred during validation: ${sanitizeText(error.message)}</div>`;
+            });
+        };
+        
+        clearResultsButton.addEventListener('click', function() {
+            fetch('/api/clear-validation-results', {
+                method: 'POST',
+                headers: {
+                    'X-CSRFToken': csrfToken
+                }
+            })
+            .then(response => response.json())
+            .then(data => {
+                if (data.status === 'success') {
+                    validationResult.style.display = 'none';
+                    clearResultsButton.classList.add('d-none');
+                } else {
+                    console.error('Failed to clear results:', data.message);
+                }
+            })
+            .catch(error => {
+                console.error('Network error while clearing results:', error);
             });
         });
-    }
-});
+
+        if (packageSelect) {
+            packageSelect.addEventListener('change', function() {
+                updatePackageFields(this);
+            });
+        }
+        
+        if (validateButton) {
+            validateButton.addEventListener('click', function(e) {
+                runBlockingValidation(e);
+            });
+        }
+        
+        if (packageNameInput.value && versionInput.value) {
+            const currentValue = `${packageNameInput.value}#${versionInput.value}`;
+            const optionExists = Array.from(packageSelect.options).some(opt => opt.value === currentValue);
+            if (optionExists) {
+                packageSelect.value = currentValue;
+            }
+        }
+
+        if (fhirResourceInput) {
+            fhirResourceInput.addEventListener('input', function() {
+                try {
+                    if (this.value.trim()) {
+                        JSON.parse(this.value);
+                        this.classList.remove('is-invalid');
+                        this.classList.add('is-valid');
+                    } else {
+                        this.classList.remove('is-valid', 'is-invalid');
+                    }
+                } catch (e) {
+                    this.classList.remove('is-valid');
+                    this.classList.add('is-invalid');
+                }
+            });
+        }
+    });
 </script>
-{% endblock %}
+{% endblock %}

tests/test_app.py

@@ -6,6 +6,8 @@ import tarfile
 import shutil
 import io
 import requests
+import time
+import subprocess
 from unittest.mock import patch, MagicMock, mock_open, call
 from flask import Flask, session
 from flask.testing import FlaskClient
@@ -27,9 +29,252 @@ def parse_ndjson(byte_stream):
     lines = decoded_stream.split('\n')
     return [json.loads(line) for line in lines if line.strip()]
 
+class DockerComposeContainer:
+    """
+    A class that follows the Testcontainers pattern for managing Docker Compose environments.
+    This implementation uses subprocess to call docker-compose directly since we're not 
+    installing the testcontainers-python package.
+    """
+    
+    def __init__(self, compose_file_path):
+        """
+        Initialize with the path to the docker-compose.yml file
+        
+        Args:
+            compose_file_path: Path to the docker-compose.yml file
+        """
+        self.compose_file = compose_file_path
+        self.compose_dir = os.path.dirname(os.path.abspath(compose_file_path))
+        self.containers_up = False
+        self.service_ports = {}
+        self._container_ids = {}
+    
+    def __enter__(self):
+        """Start containers when entering context"""
+        self.start()
+        return self
+    
+    def __exit__(self, exc_type, exc_val, exc_tb):
+        """Stop containers when exiting context"""
+        self.stop()
+    
+    def with_service_port(self, service_name, port):
+        """
+        Map a service port (following the testcontainers builder pattern)
+        
+        Args:
+            service_name: Name of the service in docker-compose.yml
+            port: Port number to expose
+            
+        Returns:
+            self for chaining
+        """
+        self.service_ports[service_name] = port
+        return self
+    
+    def start(self):
+        """Start the Docker Compose environment"""
+        if self.containers_up:
+            return self
+            
+        print("Starting Docker Compose environment...")
+        result = subprocess.run(
+            ['docker-compose', '-f', self.compose_file, 'up', '-d'],
+            cwd=self.compose_dir,
+            capture_output=True,
+            text=True
+        )
+        
+        if result.returncode != 0:
+            error_msg = f"Failed to start Docker Compose environment: {result.stderr}"
+            print(error_msg)
+            raise RuntimeError(error_msg)
+        
+        # Store container IDs for later use
+        self._get_container_ids()
+        
+        self.containers_up = True
+        self._wait_for_services()
+        return self
+    
+    def _get_container_ids(self):
+        """Get the container IDs for all services"""
+        result = subprocess.run(
+            ['docker-compose', '-f', self.compose_file, 'ps', '-q'],
+            cwd=self.compose_dir,
+            capture_output=True,
+            text=True
+        )
+        
+        if result.returncode != 0:
+            return
+            
+        container_ids = result.stdout.strip().split('\n')
+        if not container_ids:
+            return
+            
+        # Get service names for each container
+        for container_id in container_ids:
+            if not container_id:
+                continue
+                
+            inspect_result = subprocess.run(
+                ['docker', 'inspect', '--format', '{{index .Config.Labels "com.docker.compose.service"}}', container_id],
+                capture_output=True,
+                text=True
+            )
+            
+            if inspect_result.returncode == 0:
+                service_name = inspect_result.stdout.strip()
+                self._container_ids[service_name] = container_id
+    
+    def get_container_id(self, service_name):
+        """
+        Get the container ID for a specific service
+        
+        Args:
+            service_name: Name of the service in docker-compose.yml
+            
+        Returns:
+            Container ID as string or None if not found
+        """
+        return self._container_ids.get(service_name)
+    
+    def get_service_host(self, service_name):
+        """
+        Get the host for a specific service - for Docker Compose we just use localhost
+        
+        Args:
+            service_name: Name of the service in docker-compose.yml
+            
+        Returns:
+            Host as string (usually localhost)
+        """
+        return "localhost"
+    
+    def get_service_url(self, service_name, path=""):
+        """
+        Get the URL for a specific service
+        
+        Args:
+            service_name: Name of the service in docker-compose.yml
+            path: Optional path to append to the URL
+            
+        Returns:
+            URL as string
+        """
+        port = self.service_ports.get(service_name)
+        if not port:
+            raise ValueError(f"No port mapping defined for service {service_name}")
+            
+        url = f"http://{self.get_service_host(service_name)}:{port}"
+        if path:
+            # Ensure path starts with /
+            if not path.startswith('/'):
+                path = f"/{path}"
+            url = f"{url}{path}"
+            
+        return url
+    
+    def get_logs(self, service_name):
+        """
+        Get logs for a specific service
+        
+        Args:
+            service_name: Name of the service in docker-compose.yml
+            
+        Returns:
+            Logs as string
+        """
+        container_id = self.get_container_id(service_name)
+        if not container_id:
+            return f"No container found for service {service_name}"
+            
+        result = subprocess.run(
+            ['docker', 'logs', container_id],
+            capture_output=True,
+            text=True
+        )
+        
+        return result.stdout
+    
+    def stop(self):
+        """Stop the Docker Compose environment"""
+        if not self.containers_up:
+            return
+            
+        print("Stopping Docker Compose environment...")
+        result = subprocess.run(
+            ['docker-compose', '-f', self.compose_file, 'down'],
+            cwd=self.compose_dir,
+            capture_output=True,
+            text=True
+        )
+        
+        if result.returncode != 0:
+            print(f"Warning: Error stopping Docker Compose: {result.stderr}")
+        
+        self.containers_up = False
+    
+    def _wait_for_services(self):
+        """Wait for all services to be ready"""
+        print("Waiting for services to be ready...")
+        
+        # Wait for HAPI FHIR server
+        if 'fhir' in self.service_ports:
+            self._wait_for_http_service(
+                self.get_service_url('fhir', 'fhir/metadata'),
+                "HAPI FHIR server"
+            )
+        
+        # Wait for FHIRFLARE application
+        if 'fhirflare' in self.service_ports:
+            self._wait_for_http_service(
+                self.get_service_url('fhirflare'),
+                "FHIRFLARE application"
+            )
+        
+        # Give additional time for services to stabilize
+        time.sleep(5)
+    
+    def _wait_for_http_service(self, url, service_name, max_retries=30, retry_interval=2):
+        """
+        Wait for an HTTP service to be ready
+        
+        Args:
+            url: URL to check
+            service_name: Name of the service for logging
+            max_retries: Maximum number of retries
+            retry_interval: Interval between retries in seconds
+        """
+        for attempt in range(max_retries):
+            try:
+                response = requests.get(url, timeout=5)
+                if response.status_code == 200:
+                    print(f"{service_name} is ready after {attempt + 1} attempts")
+                    return True
+            except requests.RequestException:
+                pass
+            
+            print(f"Waiting for {service_name} (attempt {attempt + 1}/{max_retries})...")
+            time.sleep(retry_interval)
+        
+        print(f"Warning: {service_name} did not become ready in time")
+        return False
+
 class TestFHIRFlareIGToolkit(unittest.TestCase):
     @classmethod
     def setUpClass(cls):
+        # Define the Docker Compose container
+        compose_file_path = os.path.join(os.path.dirname(__file__), 'docker-compose.yml')
+        cls.container = DockerComposeContainer(compose_file_path) \
+            .with_service_port('fhir', 8080) \
+            .with_service_port('fhirflare', 5000)
+        
+        # Start the containers
+        cls.container.start()
+        
+        # Configure app for testing
         app.config['TESTING'] = True
         app.config['WTF_CSRF_ENABLED'] = False
         app.config['SQLALCHEMY_DATABASE_URI'] = 'sqlite:///:memory:'
@@ -39,6 +284,7 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
         app.config['API_KEY'] = 'test-api-key'
         app.config['VALIDATE_IMPOSED_PROFILES'] = True
         app.config['DISPLAY_PROFILE_RELATIONSHIPS'] = True
+        app.config['HAPI_FHIR_URL'] = cls.container.get_service_url('fhir', 'fhir')  # Point to containerized HAPI FHIR
 
         cls.app_context = app.app_context()
         cls.app_context.push()
@@ -50,6 +296,9 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
         cls.app_context.pop()
         if os.path.exists(cls.test_packages_dir):
             shutil.rmtree(cls.test_packages_dir)
+        
+        # Stop Docker Compose environment
+        cls.container.stop()
 
     def setUp(self):
         if os.path.exists(self.test_packages_dir):
@@ -96,321 +345,63 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
         with patch('fhirpath.evaluate', side_effect=Exception("fhirpath error")):
             self.assertEqual(services.navigate_fhir_path(resource, "Patient.name[0].given"), ["John"])
 
-    def test_02_render_node_as_li(self):
-        node = {
-            "element": {"path": "Patient.identifier", "id": "Patient.identifier", "sliceName": "us-ssn", "min": 0, "max": "*", "type": [{"code": "Identifier"}]},
-            "name": "identifier",
-            "children": {}
-        }
-        must_support_paths = {"Patient.identifier:us-ssn"}
-        with app.app_context:
-            html = render_template('cp_view_processed_ig.html', processed_ig=MagicMock(must_support_elements={"USCorePatientProfile": ["Patient.identifier:us-ssn"]}), profile_list=[{"name": "USCorePatientProfile"}], base_list=[])
-            self.assertIn("identifier:us-ssn", html)
-            self.assertIn("list-group-item-warning", html)
-            self.assertIn("Must Support (Slice: us-ssn)", html)
-
     # --- Basic Page Rendering Tests ---
 
     def test_03_homepage(self):
-        response = self.client.get('/')
+        # Connect to the containerized application
+        response = requests.get(self.container.get_service_url('fhirflare'))
         self.assertEqual(response.status_code, 200)
-        self.assertIn(b'FHIRFLARE IG Toolkit', response.data)
+        self.assertIn('FHIRFLARE IG Toolkit', response.text)
 
     def test_04_import_ig_page(self):
-        response = self.client.get('/import-ig')
+        response = requests.get(self.container.get_service_url('fhirflare', 'import-ig'))
         self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Import IG', response.data)
-        self.assertIn(b'Package Name', response.data)
-        self.assertIn(b'Package Version', response.data)
-        self.assertIn(b'name="dependency_mode"', response.data)
+        self.assertIn('Import IG', response.text)
+        self.assertIn('Package Name', response.text)
+        self.assertIn('Package Version', response.text)
+        self.assertIn('name="dependency_mode"', response.text)
 
-    @patch('app.list_downloaded_packages', return_value=([], [], {}))
-    def test_05_view_igs_no_packages(self, mock_list_pkgs):
-        response = self.client.get('/view-igs')
-        self.assertEqual(response.status_code, 200)
-        self.assertNotIn(b'<th>Package Name</th>', response.data)
-        self.assertIn(b'No packages downloaded yet.', response.data)
-        mock_list_pkgs.assert_called_once()
+    # --- API Integration Tests ---
 
-    def test_06_view_igs_with_packages(self):
-        self.create_mock_tgz('hl7.fhir.us.core-6.1.0.tgz', {'package/package.json': {'name': 'hl7.fhir.us.core', 'version': '6.1.0'}})
-        response = self.client.get('/view-igs')
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'hl7.fhir.us.core', response.data)
-        self.assertIn(b'6.1.0', response.data)
-        self.assertIn(b'<th>Package Name</th>', response.data)
-
-    @patch('app.render_template')
-    def test_07_push_igs_page(self, mock_render_template):
-        mock_render_template.return_value = "Mock Render"
-        response = self.client.get('/push-igs')
-        self.assertEqual(response.status_code, 200)
-        mock_render_template.assert_called()
-        call_args, call_kwargs = mock_render_template.call_args
-        self.assertEqual(call_args[0], 'cp_push_igs.html')
-
-    # --- UI Form Tests ---
-
-    @patch('app.services.import_package_and_dependencies')
-    def test_10_import_ig_form_success(self, mock_import):
-        mock_import.return_value = {'requested': ('hl7.fhir.us.core', '6.1.0'), 'processed': {('hl7.fhir.us.core', '6.1.0')}, 'downloaded': {('hl7.fhir.us.core', '6.1.0'): 'path/pkg.tgz'}, 'all_dependencies': {}, 'dependencies': [], 'errors': []}
-        response = self.client.post('/import-ig', data={'package_name': 'hl7.fhir.us.core', 'package_version': '6.1.0', 'dependency_mode': 'recursive'}, follow_redirects=True)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Successfully downloaded hl7.fhir.us.core#6.1.0 and dependencies! Mode: recursive', response.data)
-        mock_import.assert_called_once_with('hl7.fhir.us.core', '6.1.0', dependency_mode='recursive')
-
-    @patch('app.services.import_package_and_dependencies')
-    def test_11_import_ig_form_failure_404(self, mock_import):
-        mock_import.return_value = {'requested': ('invalid.package', '1.0.0'), 'processed': set(), 'downloaded': {}, 'all_dependencies': {}, 'dependencies': [], 'errors': ['HTTP error fetching package: 404 Client Error: Not Found for url: ...']}
-        response = self.client.post('/import-ig', data={'package_name': 'invalid.package', 'package_version': '1.0.0', 'dependency_mode': 'recursive'}, follow_redirects=False)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Package not found on registry (404)', response.data)
-
-    @patch('app.services.import_package_and_dependencies')
-    def test_12_import_ig_form_failure_conn_error(self, mock_import):
-        mock_import.return_value = {'requested': ('conn.error.pkg', '1.0.0'), 'processed': set(), 'downloaded': {}, 'all_dependencies': {}, 'dependencies': [], 'errors': ['Connection error: Cannot connect to registry...']}
-        response = self.client.post('/import-ig', data={'package_name': 'conn.error.pkg', 'package_version': '1.0.0', 'dependency_mode': 'recursive'}, follow_redirects=False)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Could not connect to the FHIR package registry', response.data)
-
-    def test_13_import_ig_form_invalid_input(self):
-        response = self.client.post('/import-ig', data={'package_name': 'invalid@package', 'package_version': '1.0.0', 'dependency_mode': 'recursive'}, follow_redirects=True)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Error in Package Name: Invalid package name format.', response.data)
-
-    @patch('app.services.process_package_file')
-    @patch('app.services.parse_package_filename')
-    def test_20_process_ig_success(self, mock_parse, mock_process):
-        pkg_name = 'hl7.fhir.us.core'
-        pkg_version = '6.1.0'
-        filename = f'{pkg_name}-{pkg_version}.tgz'
-        mock_parse.return_value = (pkg_name, pkg_version)
-        mock_process.return_value = {
-            'resource_types_info': [{'name': 'Patient', 'type': 'Patient', 'is_profile': False, 'must_support': True, 'optional_usage': False}],
-            'must_support_elements': {'Patient': ['Patient.name', 'Patient.identifier:us-ssn']},
-            'examples': {'Patient': ['package/Patient-example.json']},
-            'complies_with_profiles': [],
-            'imposed_profiles': ['http://hl7.org/fhir/StructureDefinition/Patient'],
-            'errors': []
-        }
-        self.create_mock_tgz(filename, {'package/package.json': {'name': pkg_name, 'version': pkg_version}})
-        response = self.client.post('/process-igs', data={'filename': filename}, follow_redirects=False)
-        self.assertEqual(response.status_code, 302)
-        self.assertTrue(response.location.endswith('/view-igs'))
-        with self.client.session_transaction() as sess:
-            self.assertIn(('success', f'Successfully processed {pkg_name}#{pkg_version}!'), sess.get('_flashes', []))
-        mock_parse.assert_called_once_with(filename)
-        mock_process.assert_called_once_with(os.path.join(app.config['FHIR_PACKAGES_DIR'], filename))
-        processed_ig = db.session.query(ProcessedIg).filter_by(package_name=pkg_name, version=pkg_version).first()
-        self.assertIsNotNone(processed_ig)
-        self.assertEqual(processed_ig.package_name, pkg_name)
-        self.assertIn('Patient.name', processed_ig.must_support_elements.get('Patient', []))
-
-    def test_21_process_ig_file_not_found(self):
-        response = self.client.post('/process-igs', data={'filename': 'nonexistent.tgz'}, follow_redirects=True)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Package file not found: nonexistent.tgz', response.data)
-
-    def test_22_delete_ig_success(self):
-        filename = 'hl7.fhir.us.core-6.1.0.tgz'
-        metadata_filename = 'hl7.fhir.us.core-6.1.0.metadata.json'
-        self.create_mock_tgz(filename, {'package/package.json': {'name': 'hl7.fhir.us.core', 'version': '6.1.0'}})
-        metadata_path = os.path.join(app.config['FHIR_PACKAGES_DIR'], metadata_filename)
-        open(metadata_path, 'w').write(json.dumps({'name': 'hl7.fhir.us.core'}))
-        self.assertTrue(os.path.exists(os.path.join(app.config['FHIR_PACKAGES_DIR'], filename)))
-        self.assertTrue(os.path.exists(metadata_path))
-        response = self.client.post('/delete-ig', data={'filename': filename}, follow_redirects=True)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(f'Deleted: {filename}, {metadata_filename}'.encode('utf-8'), response.data)
-        self.assertFalse(os.path.exists(os.path.join(app.config['FHIR_PACKAGES_DIR'], filename)))
-        self.assertFalse(os.path.exists(metadata_path))
-
-    def test_23_unload_ig_success(self):
-        processed_ig = ProcessedIg(package_name='test.pkg', version='1.0', processed_date=datetime.now(timezone.utc), resource_types_info=[], must_support_elements={}, examples={})
-        db.session.add(processed_ig)
-        db.session.commit()
-        ig_id = processed_ig.id
-        self.assertIsNotNone(db.session.get(ProcessedIg, ig_id))
-        response = self.client.post('/unload-ig', data={'ig_id': str(ig_id)}, follow_redirects=True)
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Unloaded processed data for test.pkg#1.0', response.data)
-        self.assertIsNone(db.session.get(ProcessedIg, ig_id))
-
-    # --- Phase 2 Tests ---
-
-    @patch('os.path.exists', return_value=True)
-    @patch('tarfile.open')
-    @patch('requests.put')
-    def test_30_load_ig_to_hapi_success(self, mock_requests_put, mock_tarfile_open, mock_os_exists):
+    def test_30_load_ig_to_hapi_integration(self):
+        """Test loading an IG to the containerized HAPI FHIR server"""
         pkg_name = 'hl7.fhir.us.core'
         pkg_version = '6.1.0'
         filename = f'{pkg_name}-{pkg_version}.tgz'
         self.create_mock_tgz(filename, {
             'package/package.json': {'name': pkg_name, 'version': pkg_version},
-            'package/Patient-profile.json': {'resourceType': 'StructureDefinition', 'id': 'us-core-patient'}
+            'package/StructureDefinition-us-core-patient.json': {
+                'resourceType': 'StructureDefinition',
+                'id': 'us-core-patient',
+                'url': 'http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient',
+                'name': 'USCorePatientProfile',
+                'type': 'Patient',
+                'status': 'active'
+            }
         })
-        mock_tar = MagicMock()
-        profile_member = MagicMock(spec=tarfile.TarInfo)
-        profile_member.name = 'package/Patient-profile.json'
-        profile_member.isfile.return_value = True
-        mock_tar.getmembers.return_value = [profile_member]
-        mock_tar.extractfile.return_value = io.BytesIO(json.dumps({'resourceType': 'StructureDefinition', 'id': 'us-core-patient'}).encode('utf-8'))
-        mock_tarfile_open.return_value.__enter__.return_value = mock_tar
-        mock_requests_put.return_value = MagicMock(status_code=200)
+        
+        # Load IG to HAPI
         response = self.client.post(
             '/api/load-ig-to-hapi',
             data=json.dumps({'package_name': pkg_name, 'version': pkg_version}),
-            content_type='application/json'
+            content_type='application/json',
+            headers={'X-API-Key': 'test-api-key'}
         )
+        
         self.assertEqual(response.status_code, 200)
         data = json.loads(response.data)
         self.assertEqual(data['status'], 'success')
-        mock_requests_put.assert_called_once_with(
-            'http://localhost:8080/fhir/StructureDefinition/us-core-patient',
-            json={'resourceType': 'StructureDefinition', 'id': 'us-core-patient'},
-            headers={'Content-Type': 'application/fhir+json'}
-        )
+        
+        # Verify the resource was loaded by querying the HAPI FHIR server directly
+        hapi_response = requests.get(self.container.get_service_url('fhir', 'fhir/StructureDefinition/us-core-patient'))
+        self.assertEqual(hapi_response.status_code, 200)
+        resource = hapi_response.json()
+        self.assertEqual(resource['resourceType'], 'StructureDefinition')
+        self.assertEqual(resource['id'], 'us-core-patient')
 
-    def test_31_load_ig_to_hapi_not_found(self):
-        response = self.client.post(
-            '/api/load-ig-to-hapi',
-            data=json.dumps({'package_name': 'nonexistent', 'version': '1.0'}),
-            content_type='application/json'
-        )
-        self.assertEqual(response.status_code, 404)
-        data = json.loads(response.data)
-        self.assertEqual(data['error'], 'Package not found')
-
-    @patch('os.path.exists', return_value=True)
-    @patch('requests.post')
-    def test_32_api_validate_sample_hapi_success(self, mock_requests_post, mock_os_exists):
-        pkg_name = 'hl7.fhir.us.core'
-        pkg_version = '6.1.0'
-        sample_resource = {
-            'resourceType': 'Patient',
-            'id': 'valid1',
-            'meta': {'profile': ['http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient']},
-            'name': [{'given': ['John'], 'family': 'Doe'}]
-        }
-        mock_requests_post.return_value = MagicMock(
-            status_code=200,
-            json=lambda: {
-                'resourceType': 'OperationOutcome',
-                'issue': [{'severity': 'warning', 'diagnostics': 'Must Support element Patient.identifier missing'}]
-            }
-        )
-        response = self.client.post(
-            '/api/validate-sample',
-            data=json.dumps({
-                'package_name': pkg_name,
-                'version': pkg_version,
-                'sample_data': json.dumps(sample_resource),
-                'mode': 'single',
-                'include_dependencies': True
-            }),
-            content_type='application/json',
-            headers={'X-API-Key': 'test-api-key'}
-        )
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertTrue(data['valid'])
-        self.assertEqual(data['warnings'], ['Must Support element Patient.identifier missing'])
-        mock_requests_post.assert_called_once_with(
-            'http://localhost:8080/fhir/Patient/$validate?profile=http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient',
-            json=sample_resource,
-            headers={'Content-Type': 'application/fhir+json', 'Accept': 'application/fhir+json'},
-            timeout=10
-        )
-
-    @patch('os.path.exists', return_value=True)
-    @patch('requests.post', side_effect=requests.ConnectionError("HAPI down"))
-    @patch('services.navigate_fhir_path')
-    def test_33_api_validate_sample_hapi_fallback(self, mock_navigate_fhir_path, mock_requests_post, mock_os_exists):
-        pkg_name = 'hl7.fhir.us.core'
-        pkg_version = '6.1.0'
-        sample_resource = {
-            'resourceType': 'Patient',
-            'id': 'valid1',
-            'meta': {'profile': ['http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient']}
-        }
-        mock_navigate_fhir_path.return_value = None
-        self.create_mock_tgz(f'{pkg_name}-{pkg_version}.tgz', {
-            'package/package.json': {'name': pkg_name, 'version': pkg_version},
-            'package/StructureDefinition-us-core-patient.json': {
-                'resourceType': 'StructureDefinition',
-                'snapshot': {'element': [{'path': 'Patient.name', 'min': 1}, {'path': 'Patient.identifier', 'mustSupport': True}]}
-            }
-        })
-        response = self.client.post(
-            '/api/validate-sample',
-            data=json.dumps({
-                'package_name': pkg_name,
-                'version': pkg_version,
-                'sample_data': json.dumps(sample_resource),
-                'mode': 'single',
-                'include_dependencies': True
-            }),
-            content_type='application/json',
-            headers={'X-API-Key': 'test-api-key'}
-        )
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertFalse(data['valid'])
-        self.assertIn('Required element Patient.name missing', data['errors'])
-        self.assertIn('HAPI validation failed', [d['issue'] for d in data['details']])
-
-    # --- Phase 3 Tests ---
-
-    @patch('requests.get')
-    def test_34_hapi_status_check(self, mock_requests_get):
-        mock_requests_get.return_value = MagicMock(status_code=200, json=lambda: {'resourceType': 'CapabilityStatement'})
-        response = self.client.get('/fhir/metadata')
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertEqual(data['resourceType'], 'CapabilityStatement')
-        mock_requests_get.side_effect = requests.ConnectionError("HAPI down")
-        response = self.client.get('/fhir/metadata')
-        self.assertEqual(response.status_code, 503)
-        data = json.loads(response.data)
-        self.assertIn('Unable to connect to HAPI FHIR server', data['error'])
-
-    def test_35_validate_sample_ui_rendering(self):
-        pkg_name = 'hl7.fhir.us.core'
-        pkg_version = '6.1.0'
-        sample_resource = {
-            'resourceType': 'Patient',
-            'id': 'test',
-            'meta': {'profile': ['http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient']}
-        }
-        self.create_mock_tgz(f'{pkg_name}-{pkg_version}.tgz', {
-            'package/package.json': {'name': pkg_name, 'version': pkg_version},
-            'package/StructureDefinition-us-core-patient.json': {
-                'resourceType': 'StructureDefinition',
-                'snapshot': {'element': [{'path': 'Patient.name', 'min': 1}, {'path': 'Patient.identifier', 'mustSupport': True}]}
-            }
-        })
-        response = self.client.post(
-            '/api/validate-sample',
-            data=json.dumps({
-                'package_name': pkg_name,
-                'version': pkg_version,
-                'sample_data': json.dumps(sample_resource),
-                'mode': 'single',
-                'include_dependencies': True
-            }),
-            content_type='application/json',
-            headers={'X-API-Key': 'test-api-key'}
-        )
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertFalse(data['valid'])
-        self.assertIn('Required element Patient.name missing', data['errors'])
-        self.assertIn('Must Support element Patient.identifier missing', data['warnings'])
-        response = self.client.get('/validate-sample')
-        self.assertEqual(response.status_code, 200)
-        self.assertIn(b'us-core-patient', response.data)
-
-    def test_36_must_support_consistency(self):
+    def test_31_validate_sample_with_hapi_integration(self):
+        """Test validating a sample against the containerized HAPI FHIR server"""
+        # First, load the necessary StructureDefinition
         pkg_name = 'hl7.fhir.us.core'
         pkg_version = '6.1.0'
         filename = f'{pkg_name}-{pkg_version}.tgz'
@@ -418,15 +409,37 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
             'package/package.json': {'name': pkg_name, 'version': pkg_version},
             'package/StructureDefinition-us-core-patient.json': {
                 'resourceType': 'StructureDefinition',
-                'snapshot': {'element': [{'path': 'Patient.name', 'min': 1}, {'path': 'Patient.identifier', 'mustSupport': True, 'sliceName': 'us-ssn'}]}
+                'id': 'us-core-patient',
+                'url': 'http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient',
+                'name': 'USCorePatientProfile',
+                'type': 'Patient',
+                'status': 'active',
+                'snapshot': {
+                    'element': [
+                        {'path': 'Patient', 'min': 1, 'max': '1'},
+                        {'path': 'Patient.name', 'min': 1, 'max': '*'},
+                        {'path': 'Patient.identifier', 'min': 0, 'max': '*', 'mustSupport': True}
+                    ]
+                }
             }
         })
-        services.process_package_file(os.path.join(app.config['FHIR_PACKAGES_DIR'], filename))
+        
+        # Load IG to HAPI
+        self.client.post(
+            '/api/load-ig-to-hapi',
+            data=json.dumps({'package_name': pkg_name, 'version': pkg_version}),
+            content_type='application/json',
+            headers={'X-API-Key': 'test-api-key'}
+        )
+        
+        # Validate a sample that's missing a required element
         sample_resource = {
             'resourceType': 'Patient',
-            'id': 'test',
+            'id': 'test-patient',
             'meta': {'profile': ['http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient']}
+            # Missing required 'name' element
         }
+        
         response = self.client.post(
             '/api/validate-sample',
             data=json.dumps({
@@ -439,18 +452,68 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
             content_type='application/json',
             headers={'X-API-Key': 'test-api-key'}
         )
+        
         self.assertEqual(response.status_code, 200)
         data = json.loads(response.data)
-        self.assertIn('Must Support element Patient.identifier missing', data['warnings'])
-        with self.app_context:
-            ig = ProcessedIg.query.filter_by(package_name=pkg_name, version=pkg_version).first()
-            self.assertIsNotNone(ig)
-            must_support_paths = ig.must_support_elements.get('Patient', [])
-            self.assertIn('Patient.identifier:us-ssn', must_support_paths)
-        response = self.client.get(f'/view-ig/{ig.id}')
+        self.assertFalse(data['valid'])
+        # Check for validation error related to missing name
+        found_name_error = any('name' in error for error in data['errors'])
+        self.assertTrue(found_name_error, f"Expected error about missing name element, got: {data['errors']}")
+
+    def test_32_push_ig_to_hapi_integration(self):
+        """Test pushing multiple resources from an IG to the containerized HAPI FHIR server"""
+        pkg_name = 'test.push.pkg'
+        pkg_version = '1.0.0'
+        filename = f'{pkg_name}-{pkg_version}.tgz'
+        
+        # Create a test package with multiple resources
+        self.create_mock_tgz(filename, {
+            'package/package.json': {'name': pkg_name, 'version': pkg_version},
+            'package/Patient-test1.json': {
+                'resourceType': 'Patient',
+                'id': 'test1',
+                'name': [{'family': 'Test', 'given': ['Patient']}]
+            },
+            'package/Observation-test1.json': {
+                'resourceType': 'Observation',
+                'id': 'test1',
+                'status': 'final',
+                'code': {'coding': [{'system': 'http://loinc.org', 'code': '12345-6'}]}
+            }
+        })
+        
+        # Push the IG to HAPI
+        response = self.client.post(
+            '/api/push-ig',
+            data=json.dumps({
+                'package_name': pkg_name,
+                'version': pkg_version,
+                'fhir_server_url': self.container.get_service_url('fhir', 'fhir'),
+                'include_dependencies': False
+            }),
+            content_type='application/json',
+            headers={'X-API-Key': 'test-api-key', 'Accept': 'application/x-ndjson'}
+        )
+        
         self.assertEqual(response.status_code, 200)
-        self.assertIn(b'Patient.identifier:us-ssn', response.data)
-        self.assertIn(b'list-group-item-warning', response.data)
+        streamed_data = parse_ndjson(response.data)
+        complete_msg = next((item for item in streamed_data if item.get('type') == 'complete'), None)
+        self.assertIsNotNone(complete_msg, "Complete message not found in streamed response")
+        summary = complete_msg.get('data', {})
+        self.assertTrue(summary.get('success_count') >= 2, f"Expected at least 2 successful resources, got {summary.get('success_count')}")
+        
+        # Verify resources were loaded by querying the HAPI FHIR server directly
+        patient_response = requests.get(self.container.get_service_url('fhir', 'fhir/Patient/test1'))
+        self.assertEqual(patient_response.status_code, 200)
+        patient = patient_response.json()
+        self.assertEqual(patient['resourceType'], 'Patient')
+        self.assertEqual(patient['id'], 'test1')
+        
+        observation_response = requests.get(self.container.get_service_url('fhir', 'fhir/Observation/test1'))
+        self.assertEqual(observation_response.status_code, 200)
+        observation = observation_response.json()
+        self.assertEqual(observation['resourceType'], 'Observation')
+        self.assertEqual(observation['id'], 'test1')
 
     # --- Existing API Tests ---
 
@@ -515,7 +578,7 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
         pkg_name = 'push.test.pkg'
         pkg_version = '1.0.0'
         filename = f'{pkg_name}-{pkg_version}.tgz'
-        fhir_server_url = 'http://fake-fhir.com/baseR4'
+        fhir_server_url = self.container.get_service_url('fhir', 'fhir')
         mock_get_metadata.return_value = {'imported_dependencies': []}
         mock_tar = MagicMock()
         mock_patient = {'resourceType': 'Patient', 'id': 'pat1'}
@@ -564,225 +627,22 @@ class TestFHIRFlareIGToolkit(unittest.TestCase):
         self.assertEqual(len(summary.get('failed_details')), 0)
         mock_os_exists.assert_called_with(os.path.join(self.test_packages_dir, filename))
 
-    @patch('os.path.exists', return_value=True)
-    @patch('app.services.get_package_metadata')
-    @patch('tarfile.open')
-    @patch('requests.Session')
-    def test_51_api_push_ig_with_failures(self, mock_session, mock_tarfile_open, mock_get_metadata, mock_os_exists):
-        pkg_name = 'push.fail.pkg'
-        pkg_version = '1.0.0'
-        filename = f'{pkg_name}-{pkg_version}.tgz'
-        fhir_server_url = 'http://fail-fhir.com/baseR4'
-        mock_get_metadata.return_value = {'imported_dependencies': []}
-        mock_tar = MagicMock()
-        mock_ok_res = {'resourceType': 'Patient', 'id': 'ok1'}
-        mock_fail_res = {'resourceType': 'Observation', 'id': 'fail1'}
-        ok_member = MagicMock(spec=tarfile.TarInfo)
-        ok_member.name = 'package/Patient-ok1.json'
-        ok_member.isfile.return_value = True
-        fail_member = MagicMock(spec=tarfile.TarInfo)
-        fail_member.name = 'package/Observation-fail1.json'
-        fail_member.isfile.return_value = True
-        mock_tar.getmembers.return_value = [ok_member, fail_member]
-        def mock_extractfile(member):
-            if member.name == 'package/Patient-ok1.json':
-                return io.BytesIO(json.dumps(mock_ok_res).encode('utf-8'))
-            if member.name == 'package/Observation-fail1.json':
-                return io.BytesIO(json.dumps(mock_fail_res).encode('utf-8'))
-            return None
-        mock_tar.extractfile.side_effect = mock_extractfile
-        mock_tarfile_open.return_value.__enter__.return_value = mock_tar
-        mock_session_instance = MagicMock()
-        mock_ok_response = MagicMock(status_code=200)
-        mock_ok_response.raise_for_status.return_value = None
-        mock_fail_http_response = MagicMock(status_code=400)
-        mock_fail_http_response.json.return_value = {'resourceType': 'OperationOutcome', 'issue': [{'severity': 'error', 'diagnostics': 'Validation failed'}]}
-        mock_fail_exception = requests.exceptions.HTTPError(response=mock_fail_http_response)
-        mock_fail_http_response.raise_for_status.side_effect = mock_fail_exception
-        mock_session_instance.put.side_effect = [mock_ok_response, mock_fail_http_response]
-        mock_session.return_value = mock_session_instance
-        self.create_mock_tgz(filename, {'package/dummy.txt': 'content'})
-        response = self.client.post(
-            '/api/push-ig',
-            data=json.dumps({
-                'package_name': pkg_name,
-                'version': pkg_version,
-                'fhir_server_url': fhir_server_url,
-                'include_dependencies': False,
-                'api_key': 'test-api-key'
-            }),
-            content_type='application/json',
-            headers={'X-API-Key': 'test-api-key', 'Accept': 'application/x-ndjson'}
-        )
-        self.assertEqual(response.status_code, 200)
-        streamed_data = parse_ndjson(response.data)
-        complete_msg = next((item for item in streamed_data if item.get('type') == 'complete'), None)
-        self.assertIsNotNone(complete_msg)
-        summary = complete_msg.get('data', {})
-        self.assertEqual(summary.get('status'), 'partial')
-        self.assertEqual(summary.get('success_count'), 1)
-        self.assertEqual(summary.get('failure_count'), 1)
-        self.assertEqual(len(summary.get('failed_details')), 1)
-        self.assertEqual(summary['failed_details'][0].get('resource'), 'Observation/fail1')
-        self.assertIn('Validation failed', summary['failed_details'][0].get('error', ''))
-        mock_os_exists.assert_called_with(os.path.join(self.test_packages_dir, filename))
-
-    @patch('os.path.exists', return_value=True)
-    @patch('app.services.get_package_metadata')
-    @patch('tarfile.open')
-    @patch('requests.Session')
-    def test_52_api_push_ig_with_dependency(self, mock_session, mock_tarfile_open, mock_get_metadata, mock_os_exists):
-        main_pkg_name = 'main.dep.pkg'
-        main_pkg_ver = '1.0'
-        main_filename = f'{main_pkg_name}-{main_pkg_ver}.tgz'
-        dep_pkg_name = 'dep.pkg'
-        dep_pkg_ver = '1.0'
-        dep_filename = f'{dep_pkg_name}-{dep_pkg_ver}.tgz'
-        fhir_server_url = 'http://dep-fhir.com/baseR4'
-        self.create_mock_tgz(main_filename, {'package/Patient-main.json': {'resourceType': 'Patient', 'id': 'main'}})
-        self.create_mock_tgz(dep_filename, {'package/Observation-dep.json': {'resourceType': 'Observation', 'id': 'dep'}})
-        mock_get_metadata.return_value = {'imported_dependencies': [{'name': dep_pkg_name, 'version': dep_pkg_ver}]}
-        mock_main_tar = MagicMock()
-        main_member = MagicMock(spec=tarfile.TarInfo)
-        main_member.name = 'package/Patient-main.json'
-        main_member.isfile.return_value = True
-        mock_main_tar.getmembers.return_value = [main_member]
-        mock_main_tar.extractfile.return_value = io.BytesIO(json.dumps({'resourceType': 'Patient', 'id': 'main'}).encode('utf-8'))
-        mock_dep_tar = MagicMock()
-        dep_member = MagicMock(spec=tarfile.TarInfo)
-        dep_member.name = 'package/Observation-dep.json'
-        dep_member.isfile.return_value = True
-        mock_dep_tar.getmembers.return_value = [dep_member]
-        mock_dep_tar.extractfile.return_value = io.BytesIO(json.dumps({'resourceType': 'Observation', 'id': 'dep'}).encode('utf-8'))
-        def tar_opener(path, mode):
-            mock_tar_ctx = MagicMock()
-            if main_filename in path:
-                mock_tar_ctx.__enter__.return_value = mock_main_tar
-            elif dep_filename in path:
-                mock_tar_ctx.__enter__.return_value = mock_dep_tar
-            else:
-                empty_mock_tar = MagicMock()
-                empty_mock_tar.getmembers.return_value = []
-                mock_tar_ctx.__enter__.return_value = empty_mock_tar
-            return mock_tar_ctx
-        mock_tarfile_open.side_effect = tar_opener
-        mock_session_instance = MagicMock()
-        mock_put_response = MagicMock(status_code=200)
-        mock_put_response.raise_for_status.return_value = None
-        mock_session_instance.put.return_value = mock_put_response
-        mock_session.return_value = mock_session_instance
-        response = self.client.post(
-            '/api/push-ig',
-            data=json.dumps({
-                'package_name': main_pkg_name,
-                'version': main_pkg_ver,
-                'fhir_server_url': fhir_server_url,
-                'include_dependencies': True,
-                'api_key': 'test-api-key'
-            }),
-            content_type='application/json',
-            headers={'X-API-Key': 'test-api-key', 'Accept': 'application/x-ndjson'}
-        )
-        self.assertEqual(response.status_code, 200)
-        streamed_data = parse_ndjson(response.data)
-        complete_msg = next((item for item in streamed_data if item.get('type') == 'complete'), None)
-        self.assertIsNotNone(complete_msg)
-        summary = complete_msg.get('data', {})
-        self.assertEqual(summary.get('status'), 'success')
-        self.assertEqual(summary.get('success_count'), 2)
-        self.assertEqual(len(summary.get('pushed_packages_summary')), 2)
-        mock_os_exists.assert_any_call(os.path.join(self.test_packages_dir, main_filename))
-        mock_os_exists.assert_any_call(os.path.join(self.test_packages_dir, dep_filename))
-
-    # --- Helper Route Tests ---
-
-    @patch('app.ProcessedIg.query')
-    @patch('app.services.find_and_extract_sd')
-    @patch('os.path.exists')
-    def test_60_get_structure_definition_success(self, mock_exists, mock_find_sd, mock_query):
-        pkg_name = 'struct.test'
-        pkg_version = '1.0'
-        resource_type = 'Patient'
-        mock_exists.return_value = True
-        mock_sd_data = {'resourceType': 'StructureDefinition', 'snapshot': {'element': [{'id': 'Patient.name', 'min': 1}, {'id': 'Patient.birthDate', 'mustSupport': True}]}}
-        mock_find_sd.return_value = (mock_sd_data, 'path/to/sd.json')
-        mock_processed_ig = MagicMock()
-        mock_processed_ig.must_support_elements = {resource_type: ['Patient.birthDate']}
-        mock_query.filter_by.return_value.first.return_value = mock_processed_ig
-        response = self.client.get(f'/get-structure?package_name={pkg_name}&package_version={pkg_version}&resource_type={resource_type}')
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertEqual(data['must_support_paths'], ['Patient.birthDate'])
-
-    @patch('app.services.import_package_and_dependencies')
-    @patch('app.services.find_and_extract_sd')
-    @patch('os.path.exists')
-    def test_61_get_structure_definition_fallback(self, mock_exists, mock_find_sd, mock_import):
-        pkg_name = 'struct.test'
-        pkg_version = '1.0'
-        core_pkg_name, core_pkg_version = services.CANONICAL_PACKAGE
-        resource_type = 'Observation'
-        def exists_side_effect(path):
-            return True
-        mock_exists.side_effect = exists_side_effect
-        mock_core_sd_data = {'resourceType': 'StructureDefinition', 'snapshot': {'element': [{'id': 'Observation.status'}]}}
-        def find_sd_side_effect(path, identifier, profile_url=None):
-            if f"{pkg_name}-{pkg_version}.tgz" in path:
-                return (None, None)
-            if f"{core_pkg_name}-{core_pkg_version}.tgz" in path:
-                return (mock_core_sd_data, 'path/obs.json')
-            return (None, None)
-        mock_find_sd.side_effect = find_sd_side_effect
-        with patch('app.ProcessedIg.query') as mock_query:
-            mock_query.filter_by.return_value.first.return_value = None
-            response = self.client.get(f'/get-structure?package_name={pkg_name}&package_version={pkg_version}&resource_type={resource_type}')
-            self.assertEqual(response.status_code, 200)
-            data = json.loads(response.data)
-            self.assertTrue(data['fallback_used'])
-
-    @patch('app.services.find_and_extract_sd', return_value=(None, None))
-    @patch('app.services.import_package_and_dependencies')
-    @patch('os.path.exists')
-    def test_62_get_structure_definition_not_found_anywhere(self, mock_exists, mock_import, mock_find_sd):
-        pkg_name = 'no.sd.pkg'
-        pkg_version = '1.0'
-        core_pkg_name, core_pkg_version = services.CANONICAL_PACKAGE
-        def exists_side_effect(path):
-            if f"{pkg_name}-{pkg_version}.tgz" in path:
-                return True
-            if f"{core_pkg_name}-{core_pkg_version}.tgz" in path:
-                return False
-            return False
-        mock_exists.side_effect = exists_side_effect
-        mock_import.return_value = {'errors': ['Download failed'], 'downloaded': False}
-        response = self.client.get(f'/get-structure?package_name={pkg_name}&package_version={pkg_version}&resource_type=Whatever')
-        self.assertEqual(response.status_code, 500)
-        data = json.loads(response.data)
-        self.assertIn('failed to download core package', data['error'])
-
-    def test_63_get_example_content_success(self):
-        pkg_name = 'example.test'
-        pkg_version = '1.0'
-        filename = f"{pkg_name}-{pkg_version}.tgz"
-        example_path = 'package/Patient-example.json'
-        example_content = {'resourceType': 'Patient', 'id': 'example'}
-        self.create_mock_tgz(filename, {example_path: example_content})
-        response = self.client.get(f'/get-example?package_name={pkg_name}&package_version={pkg_version}&filename={example_path}')
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertEqual(data, example_content)
-
-    def test_64_get_package_metadata_success(self):
-        pkg_name = 'metadata.test'
-        pkg_version = '1.0'
-        metadata_filename = f"{pkg_name}-{pkg_version}.metadata.json"
-        metadata_content = {'package_name': pkg_name, 'version': pkg_version, 'dependency_mode': 'tree-shaking'}
-        metadata_path = os.path.join(app.config['FHIR_PACKAGES_DIR'], metadata_filename)
-        open(metadata_path, 'w').write(json.dumps(metadata_content))
-        response = self.client.get(f'/get-package-metadata?package_name={pkg_name}&version={pkg_version}')
-        self.assertEqual(response.status_code, 200)
-        data = json.loads(response.data)
-        self.assertEqual(data.get('dependency_mode'), 'tree-shaking')
-
+    # --- Helper method to debug container issues ---
+    
+    def test_99_print_container_logs_on_failure(self):
+        """Helper test that prints container logs in case of failures"""
+        # This test should always pass but will print logs if other tests fail
+        try:
+            if hasattr(self, 'container') and self.container.containers_up:
+                for service_name in ['fhir', 'db', 'fhirflare']:
+                    if service_name in self.container._container_ids:
+                        print(f"\n=== Logs for {service_name} ===")
+                        print(self.container.get_logs(service_name))
+        except Exception as e:
+            print(f"Error getting container logs: {e}")
+        
+        # This assertion always passes - this test is just for debug info
+        self.assertTrue(True)
+        
 if __name__ == '__main__':
-    unittest.main()
+    unittest.main()

tests/upload_samples/Bundle-transaction-ex.json

@@ -0,0 +1,431 @@
+{
+  "resourceType" : "Bundle",
+  "id" : "transaction-ex",
+  "type" : "transaction",
+  "entry" : [{
+    "fullUrl" : "urn:uuid:64eb2d39-8da6-4c1d-b4c7-a6d3e916cd5b",
+    "resource" : {
+      "resourceType" : "Patient",
+      "id" : "example-patient",
+      "meta" : {
+        "profile" : ["urn://example.com/ph-core/fhir/StructureDefinition/ph-core-patient"]
+      },
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Patient_example-patient\"> </a>Juan Dela Cruz is a male patient born on 1 January 1980, residing in Manila, NCR, Philippines.</div>"
+      },
+      "extension" : [{
+        "extension" : [{
+          "url" : "code",
+          "valueCodeableConcept" : {
+            "coding" : [{
+              "system" : "urn:iso:std:iso:3166",
+              "code" : "PH",
+              "display" : "Philippines"
+            }]
+          }
+        },
+        {
+          "url" : "period",
+          "valuePeriod" : {
+            "start" : "2020-01-01",
+            "end" : "2023-01-01"
+          }
+        }],
+        "url" : "http://hl7.org/fhir/StructureDefinition/patient-nationality"
+      },
+      {
+        "url" : "http://hl7.org/fhir/StructureDefinition/patient-religion",
+        "valueCodeableConcept" : {
+          "coding" : [{
+            "system" : "http://terminology.hl7.org/CodeSystem/v3-ReligiousAffiliation",
+            "code" : "1007",
+            "display" : "Atheism"
+          }]
+        }
+      },
+      {
+        "url" : "urn://example.com/ph-core/fhir/StructureDefinition/indigenous-people",
+        "valueBoolean" : true
+      },
+      {
+        "url" : "urn://example.com/ph-core/fhir/StructureDefinition/indigenous-group",
+        "valueCodeableConcept" : {
+          "coding" : [{
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/indigenous-groups",
+            "code" : "Ilongots",
+            "display" : "Ilongots"
+          }]
+        }
+      },
+      {
+        "url" : "urn://example.com/ph-core/fhir/StructureDefinition/race",
+        "valueCodeableConcept" : {
+          "coding" : [{
+            "system" : "http://terminology.hl7.org/CodeSystem/v3-Race",
+            "code" : "2036-2",
+            "display" : "Filipino"
+          }]
+        }
+      }],
+      "identifier" : [{
+        "system" : "http://philhealth.gov.ph/fhir/Identifier/philhealth-id",
+        "value" : "63-584789845-5"
+      }],
+      "active" : true,
+      "name" : [{
+        "family" : "Dela Cruz",
+        "given" : ["Juan Jane",
+        "Dela Fuente"]
+      }],
+      "gender" : "male",
+      "birthDate" : "1985-06-15",
+      "address" : [{
+        "extension" : [{
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/city-municipality",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "1380200000",
+            "display" : "City of Las Piñas"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/city-municipality",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "1380100000",
+            "display" : "City of Caloocan"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/province",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "0402100000",
+            "display" : "Cavite"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/province",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "0403400000",
+            "display" : "Laguna"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/province",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "0405800000",
+            "display" : "Rizal"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/province",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "1704000000",
+            "display" : "Marinduque"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/province",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "0402100000",
+            "display" : "Cavite"
+          }
+        },
+        {
+          "url" : "urn://example.com/ph-core/fhir/StructureDefinition/province",
+          "valueCoding" : {
+            "system" : "urn://example.com/ph-core/fhir/CodeSystem/PSGC",
+            "code" : "1705100000",
+            "display" : "Occidental Mindoro"
+          }
+        }],
+        "line" : ["123 Mabini Street",
+        "Barangay Malinis"],
+        "city" : "Quezon City",
+        "district" : "NCR",
+        "postalCode" : "1100",
+        "country" : "PH"
+      }]
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "Patient"
+    }
+  },
+  {
+    "fullUrl" : "urn:uuid:60b7132e-7cfd-44bc-83c2-de140dc8aaae",
+    "resource" : {
+      "resourceType" : "Encounter",
+      "id" : "example-encounter",
+      "meta" : {
+        "profile" : ["urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter"]
+      },
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Encounter_example-encounter\"> </a>An ambulatory encounter for Juan Dela Cruz that has been completed.</div>"
+      },
+      "status" : "finished",
+      "class" : {
+        "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode",
+        "code" : "AMB",
+        "display" : "ambulatory"
+      },
+      "subject" : {
+        "reference" : "urn:uuid:64eb2d39-8da6-4c1d-b4c7-a6d3e916cd5b"
+      }
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "Encounter"
+    }
+  },
+  {
+    "fullUrl" : "urn:uuid:1a391d1e-a068-479a-88e3-e3d52c3a6f64",
+    "resource" : {
+      "resourceType" : "Condition",
+      "id" : "example-condition",
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Condition_example-condition\"> </a>Juan Dela Cruz has an active diagnosis of Type 2 Diabetes Mellitus.</div>"
+      },
+      "clinicalStatus" : {
+        "coding" : [{
+          "system" : "http://terminology.hl7.org/CodeSystem/condition-clinical",
+          "code" : "active",
+          "display" : "Active"
+        }]
+      },
+      "code" : {
+        "coding" : [{
+          "system" : "http://snomed.info/sct",
+          "code" : "44054006",
+          "display" : "Diabetes mellitus type 2"
+        }]
+      },
+      "subject" : {
+        "reference" : "urn:uuid:64eb2d39-8da6-4c1d-b4c7-a6d3e916cd5b"
+      },
+      "encounter" : {
+        "reference" : "urn:uuid:60b7132e-7cfd-44bc-83c2-de140dc8aaae"
+      }
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "Condition"
+    }
+  },
+  {
+    "fullUrl" : "urn:uuid:024dcb47-cc23-407a-839b-b4634e95abae",
+    "resource" : {
+      "resourceType" : "Medication",
+      "id" : "example-medication",
+      "meta" : {
+        "profile" : ["urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication"]
+      },
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Medication_example-medication\"> </a>A medication resource has been created, but no specific details are provided.</div>"
+      }
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "Medication"
+    }
+  },
+  {
+    "fullUrl" : "urn:uuid:013f46df-f245-4a2f-beaf-9eb2c47fb1a3",
+    "resource" : {
+      "resourceType" : "Observation",
+      "id" : "blood-pressure",
+      "meta" : {
+        "profile" : ["urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation",
+        "http://hl7.org/fhir/StructureDefinition/vitalsigns",
+        "http://hl7.org/fhir/StructureDefinition/bp"]
+      },
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_blood-pressure\"> </a>On 17 September 2012, a blood pressure observation was recorded for Juan Dela Cruz. The systolic pressure was 107 mmHg (Normal), and the diastolic pressure was 60 mmHg (Below low normal). The measurement was taken from the right arm and performed by a practitioner.</div>"
+      },
+      "identifier" : [{
+        "system" : "urn:ietf:rfc:3986",
+        "value" : "urn:uuid:187e0c12-8dd2-67e2-99b2-bf273c878281"
+      }],
+      "basedOn" : [{
+        "identifier" : {
+          "system" : "https://acme.org/identifiers",
+          "value" : "1234"
+        }
+      }],
+      "status" : "final",
+      "category" : [{
+        "coding" : [{
+          "system" : "http://terminology.hl7.org/CodeSystem/observation-category",
+          "code" : "vital-signs",
+          "display" : "Vital Signs"
+        }]
+      }],
+      "code" : {
+        "coding" : [{
+          "system" : "http://loinc.org",
+          "code" : "85354-9",
+          "display" : "Blood pressure panel with all children optional"
+        }],
+        "text" : "Blood pressure systolic & diastolic"
+      },
+      "subject" : {
+        "reference" : "urn:uuid:64eb2d39-8da6-4c1d-b4c7-a6d3e916cd5b"
+      },
+      "effectiveDateTime" : "2012-09-17",
+      "performer" : [{
+        "reference" : "urn:uuid:a036fd4c-c950-497b-8905-0d2c5ec6f1d4"
+      }],
+      "interpretation" : [{
+        "coding" : [{
+          "system" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
+          "code" : "L",
+          "display" : "Low"
+        }],
+        "text" : "Below low normal"
+      }],
+      "bodySite" : {
+        "coding" : [{
+          "system" : "http://snomed.info/sct",
+          "code" : "85050009",
+          "display" : "Bone structure of humerus"
+        }]
+      },
+      "component" : [{
+        "code" : {
+          "coding" : [{
+            "system" : "http://loinc.org",
+            "code" : "8480-6",
+            "display" : "Systolic blood pressure"
+          }]
+        },
+        "valueQuantity" : {
+          "value" : 107,
+          "unit" : "mmHg",
+          "system" : "http://unitsofmeasure.org",
+          "code" : "mm[Hg]"
+        },
+        "interpretation" : [{
+          "coding" : [{
+            "system" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
+            "code" : "N",
+            "display" : "Normal"
+          }],
+          "text" : "Normal"
+        }]
+      },
+      {
+        "code" : {
+          "coding" : [{
+            "system" : "http://loinc.org",
+            "code" : "8462-4",
+            "display" : "Diastolic blood pressure"
+          }]
+        },
+        "valueQuantity" : {
+          "value" : 60,
+          "unit" : "mmHg",
+          "system" : "http://unitsofmeasure.org",
+          "code" : "mm[Hg]"
+        },
+        "interpretation" : [{
+          "coding" : [{
+            "system" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
+            "code" : "L",
+            "display" : "Low"
+          }],
+          "text" : "Below low normal"
+        }]
+      }]
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "Observation"
+    }
+  },
+  {
+    "fullUrl" : "urn:uuid:b43c67e7-d9c4-48bb-a1b4-55769eeb9066",
+    "resource" : {
+      "resourceType" : "AllergyIntolerance",
+      "id" : "example-allergy",
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"AllergyIntolerance_example-allergy\"> </a>Juan Dela Cruz has a high criticality, active allergy to Benethamine penicillin.</div>"
+      },
+      "clinicalStatus" : {
+        "coding" : [{
+          "system" : "http://terminology.hl7.org/CodeSystem/allergyintolerance-clinical",
+          "code" : "active",
+          "display" : "Active"
+        }]
+      },
+      "criticality" : "high",
+      "code" : {
+        "coding" : [{
+          "system" : "http://snomed.info/sct",
+          "code" : "294494002",
+          "display" : "Benethamine penicillin allergy"
+        }]
+      },
+      "patient" : {
+        "reference" : "urn:uuid:64eb2d39-8da6-4c1d-b4c7-a6d3e916cd5b"
+      }
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "AllergyIntolerance"
+    }
+  },
+  {
+    "fullUrl" : "urn:uuid:a036fd4c-c950-497b-8905-0d2c5ec6f1d4",
+    "resource" : {
+      "resourceType" : "Practitioner",
+      "id" : "example-practitioner",
+      "meta" : {
+        "profile" : ["urn://example.com/ph-core/fhir/StructureDefinition/ph-core-practitioner"]
+      },
+      "text" : {
+        "status" : "generated",
+        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Practitioner_example-practitioner\"> </a>Dr. Maria Clara Santos is a female practitioner born on May 15, 1985. She resides at 1234 Mabini Street, Manila, NCR, 1000, Philippines. She can be contacted via mobile at +63-912-345-6789 or by email at maria.santos@example.ph.</div>"
+      },
+      "name" : [{
+        "family" : "Santos",
+        "given" : ["Maria",
+        "Clara"]
+      }],
+      "telecom" : [{
+        "system" : "phone",
+        "value" : "+63-912-345-6789",
+        "use" : "mobile"
+      },
+      {
+        "system" : "email",
+        "value" : "maria.santos@example.ph",
+        "use" : "work"
+      }],
+      "address" : [{
+        "use" : "home",
+        "line" : ["1234 Mabini Street"],
+        "city" : "Manila",
+        "state" : "NCR",
+        "postalCode" : "1000",
+        "country" : "PH"
+      }],
+      "gender" : "female",
+      "birthDate" : "1985-05-15"
+    },
+    "request" : {
+      "method" : "POST",
+      "url" : "Practitioner"
+    }
+  }]
+}

tests/upload_samples/validation.log

@@ -0,0 +1,25 @@
+2025-07-31 12:34:21,943 - services - DEBUG - Received validate-sample request
+2025-07-31 12:34:21,944 - services - DEBUG - Request params: package_name=example.fhir.ph.core.r4, version=0.1.0, sample_data_length=713
+2025-07-31 12:34:21,944 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
+2025-07-31 12:34:21,944 - services - DEBUG - Checking package file: /app/instance/fhir_packages/example.fhir.ph.core.r4-0.1.0.tgz
+2025-07-31 12:34:21,944 - services - DEBUG - Validating AllergyIntolerance against example.fhir.ph.core.r4#0.1.0
+2025-07-31 12:34:21,944 - services - DEBUG - Using FHIR_PACKAGES_DIR from current_app config: /app/instance/fhir_packages
+2025-07-31 12:34:21,945 - services - DEBUG - Searching for SD matching 'AllergyIntolerance' with profile 'None' in example.fhir.ph.core.r4-0.1.0.tgz
+2025-07-31 12:34:21,956 - services - INFO - SD matching identifier 'AllergyIntolerance' or profile 'None' not found within archive example.fhir.ph.core.r4-0.1.0.tgz
+2025-07-31 12:34:21,956 - services - INFO - Validation result for AllergyIntolerance against example.fhir.ph.core.r4#0.1.0: valid=False, errors=1, warnings=0
+2025-07-31 12:34:21,957 - werkzeug - INFO - 10.0.0.102 - - [31/Jul/2025 12:34:21] "POST /api/validate-sample HTTP/1.1" 200 -
+2025-07-31 12:34:24,510 - werkzeug - INFO - 10.0.2.245 - - [31/Jul/2025 12:34:24] "GET / HTTP/1.1" 200 -
+2025-07-31 12:34:27,378 - werkzeug - INFO - 10.0.2.245 - - [31/Jul/2025 12:34:27] "GET / HTTP/1.1" 200 -
+2025-07-31 12:34:34,510 - werkzeug - INFO - 10.0.2.245 - - [31/Jul/2025 12:34:34] "GET / HTTP/1.1" 200 -
+2025-07-31 12:34:36,799 - __main__ - DEBUG - Scanning packages directory: /app/instance/fhir_packages
+2025-07-31 12:34:36,800 - __main__ - DEBUG - Found 8 .tgz files: ['PHCDI.r4-0.1.0.tgz', 'hl7.fhir.uv.ips-1.1.0.tgz', 'hl7.fhir.r4.core-4.0.1.tgz', 'fhir.dicom-2022.4.20221006.tgz', 'hl7.terminology.r4-5.0.0.tgz', 'example.fhir.ph.core.r4-0.1.0.tgz', 'hl7.terminology.r4-6.4.0.tgz', 'hl7.fhir.uv.extensions.r4-5.2.0.tgz']
+2025-07-31 12:34:36,813 - __main__ - DEBUG - Added package: PHCDI.r4#0.1.0
+2025-07-31 12:34:36,837 - __main__ - DEBUG - Added package: hl7.fhir.uv.ips#1.1.0
+2025-07-31 12:34:37,378 - werkzeug - INFO - 10.0.2.245 - - [31/Jul/2025 12:34:37] "GET / HTTP/1.1" 200 -
+2025-07-31 12:34:37,514 - __main__ - DEBUG - Added package: hl7.fhir.r4.core#4.0.1
+2025-07-31 12:34:37,622 - __main__ - DEBUG - Added package: fhir.dicom#2022.4.20221006
+2025-07-31 12:34:38,008 - __main__ - DEBUG - Added package: hl7.terminology.r4#5.0.0
+2025-07-31 12:34:38,015 - __main__ - DEBUG - Added package: example.fhir.ph.core.r4#0.1.0
+2025-07-31 12:34:38,413 - __main__ - DEBUG - Added package: hl7.terminology.r4#6.4.0
+2025-07-31 12:34:38,524 - __main__ - DEBUG - Added package: hl7.fhir.uv.extensions.r4#5.2.0
+2025-07-31 12:34:38,525 - __main__ - DEBUG - Set package choices: [('', 'None'), ('PHCDI.r4#0.1.0', 'PHCDI.r4#0.1.0'), ('example.fhir.ph.core.r4#0.1.0', 'example.fhir.ph.core.r4#0.1.0'), ('fhir.dicom#2022.4.20221006', 'fhir.dicom#2022.4.20221006'), ('hl7.fhir.r4.core#4.0.1', 'hl7.fhir.r4.core#4.0.1'), ('hl7.fhir.uv.extensions.r4#5.2.0', 'hl7.fhir.uv.extensions.r4#5.2.0'), ('hl7.fhir.uv.ips#1.1.0', 'hl7.fhir.uv.ips#1.1.0'), ('hl7.terminology.r4#5.0.0', 'hl7.terminology.r4#5.0.0'), ('hl7.terminology.r4#6.4.0', 'hl7.terminology.r4#6.4.0')]

website/.gitignore

@@ -0,0 +1 @@
+/_site/

website/Gemfile

@@ -0,0 +1,7 @@
+source "https://rubygems.org"
+
+gem "jekyll", "~> 3.9.3"
+gem "github-pages", group: :jekyll_plugins
+gem "jekyll-remote-theme"
+gem "jekyll-seo-tag"
+gem "webrick", "~> 1.7"

website/Gemfile.lock

@@ -0,0 +1,309 @@
+GEM
+  remote: https://rubygems.org/
+  specs:
+    activesupport (8.0.2)
+      base64
+      benchmark (>= 0.3)
+      bigdecimal
+      concurrent-ruby (~> 1.0, >= 1.3.1)
+      connection_pool (>= 2.2.5)
+      drb
+      i18n (>= 1.6, < 2)
+      logger (>= 1.4.2)
+      minitest (>= 5.1)
+      securerandom (>= 0.3)
+      tzinfo (~> 2.0, >= 2.0.5)
+      uri (>= 0.13.1)
+    addressable (2.8.7)
+      public_suffix (>= 2.0.2, < 7.0)
+    base64 (0.2.0)
+    benchmark (0.4.1)
+    bigdecimal (3.2.2)
+    coffee-script (2.4.1)
+      coffee-script-source
+      execjs
+    coffee-script-source (1.12.2)
+    colorator (1.1.0)
+    commonmarker (0.23.11)
+    concurrent-ruby (1.3.5)
+    connection_pool (2.5.3)
+    dnsruby (1.72.4)
+      base64 (~> 0.2.0)
+      logger (~> 1.6.5)
+      simpleidn (~> 0.2.1)
+    drb (2.2.3)
+    em-websocket (0.5.3)
+      eventmachine (>= 0.12.9)
+      http_parser.rb (~> 0)
+    ethon (0.16.0)
+      ffi (>= 1.15.0)
+    eventmachine (1.2.7)
+    execjs (2.10.0)
+    faraday (2.13.4)
+      faraday-net_http (>= 2.0, < 3.5)
+      json
+      logger
+    faraday-net_http (3.4.1)
+      net-http (>= 0.5.0)
+    ffi (1.17.2-aarch64-linux-gnu)
+    ffi (1.17.2-aarch64-linux-musl)
+    ffi (1.17.2-arm-linux-gnu)
+    ffi (1.17.2-arm-linux-musl)
+    ffi (1.17.2-arm64-darwin)
+    ffi (1.17.2-x86_64-darwin)
+    ffi (1.17.2-x86_64-linux-gnu)
+    ffi (1.17.2-x86_64-linux-musl)
+    forwardable-extended (2.6.0)
+    gemoji (4.1.0)
+    github-pages (231)
+      github-pages-health-check (= 1.18.2)
+      jekyll (= 3.9.5)
+      jekyll-avatar (= 0.8.0)
+      jekyll-coffeescript (= 1.2.2)
+      jekyll-commonmark-ghpages (= 0.4.0)
+      jekyll-default-layout (= 0.1.5)
+      jekyll-feed (= 0.17.0)
+      jekyll-gist (= 1.5.0)
+      jekyll-github-metadata (= 2.16.1)
+      jekyll-include-cache (= 0.2.1)
+      jekyll-mentions (= 1.6.0)
+      jekyll-optional-front-matter (= 0.3.2)
+      jekyll-paginate (= 1.1.0)
+      jekyll-readme-index (= 0.3.0)
+      jekyll-redirect-from (= 0.16.0)
+      jekyll-relative-links (= 0.6.1)
+      jekyll-remote-theme (= 0.4.3)
+      jekyll-sass-converter (= 1.5.2)
+      jekyll-seo-tag (= 2.8.0)
+      jekyll-sitemap (= 1.4.0)
+      jekyll-swiss (= 1.0.0)
+      jekyll-theme-architect (= 0.2.0)
+      jekyll-theme-cayman (= 0.2.0)
+      jekyll-theme-dinky (= 0.2.0)
+      jekyll-theme-hacker (= 0.2.0)
+      jekyll-theme-leap-day (= 0.2.0)
+      jekyll-theme-merlot (= 0.2.0)
+      jekyll-theme-midnight (= 0.2.0)
+      jekyll-theme-minimal (= 0.2.0)
+      jekyll-theme-modernist (= 0.2.0)
+      jekyll-theme-primer (= 0.6.0)
+      jekyll-theme-slate (= 0.2.0)
+      jekyll-theme-tactile (= 0.2.0)
+      jekyll-theme-time-machine (= 0.2.0)
+      jekyll-titles-from-headings (= 0.5.3)
+      jemoji (= 0.13.0)
+      kramdown (= 2.4.0)
+      kramdown-parser-gfm (= 1.1.0)
+      liquid (= 4.0.4)
+      mercenary (~> 0.3)
+      minima (= 2.5.1)
+      nokogiri (>= 1.13.6, < 2.0)
+      rouge (= 3.30.0)
+      terminal-table (~> 1.4)
+    github-pages-health-check (1.18.2)
+      addressable (~> 2.3)
+      dnsruby (~> 1.60)
+      octokit (>= 4, < 8)
+      public_suffix (>= 3.0, < 6.0)
+      typhoeus (~> 1.3)
+    html-pipeline (2.14.3)
+      activesupport (>= 2)
+      nokogiri (>= 1.4)
+    http_parser.rb (0.8.0)
+    i18n (1.14.7)
+      concurrent-ruby (~> 1.0)
+    jekyll (3.9.5)
+      addressable (~> 2.4)
+      colorator (~> 1.0)
+      em-websocket (~> 0.5)
+      i18n (>= 0.7, < 2)
+      jekyll-sass-converter (~> 1.0)
+      jekyll-watch (~> 2.0)
+      kramdown (>= 1.17, < 3)
+      liquid (~> 4.0)
+      mercenary (~> 0.3.3)
+      pathutil (~> 0.9)
+      rouge (>= 1.7, < 4)
+      safe_yaml (~> 1.0)
+    jekyll-avatar (0.8.0)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-coffeescript (1.2.2)
+      coffee-script (~> 2.2)
+      coffee-script-source (~> 1.12)
+    jekyll-commonmark (1.4.0)
+      commonmarker (~> 0.22)
+    jekyll-commonmark-ghpages (0.4.0)
+      commonmarker (~> 0.23.7)
+      jekyll (~> 3.9.0)
+      jekyll-commonmark (~> 1.4.0)
+      rouge (>= 2.0, < 5.0)
+    jekyll-default-layout (0.1.5)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-feed (0.17.0)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-gist (1.5.0)
+      octokit (~> 4.2)
+    jekyll-github-metadata (2.16.1)
+      jekyll (>= 3.4, < 5.0)
+      octokit (>= 4, < 7, != 4.4.0)
+    jekyll-include-cache (0.2.1)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-mentions (1.6.0)
+      html-pipeline (~> 2.3)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-optional-front-matter (0.3.2)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-paginate (1.1.0)
+    jekyll-readme-index (0.3.0)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-redirect-from (0.16.0)
+      jekyll (>= 3.3, < 5.0)
+    jekyll-relative-links (0.6.1)
+      jekyll (>= 3.3, < 5.0)
+    jekyll-remote-theme (0.4.3)
+      addressable (~> 2.0)
+      jekyll (>= 3.5, < 5.0)
+      jekyll-sass-converter (>= 1.0, <= 3.0.0, != 2.0.0)
+      rubyzip (>= 1.3.0, < 3.0)
+    jekyll-sass-converter (1.5.2)
+      sass (~> 3.4)
+    jekyll-seo-tag (2.8.0)
+      jekyll (>= 3.8, < 5.0)
+    jekyll-sitemap (1.4.0)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-swiss (1.0.0)
+    jekyll-theme-architect (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-cayman (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-dinky (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-hacker (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-leap-day (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-merlot (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-midnight (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-minimal (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-modernist (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-primer (0.6.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-github-metadata (~> 2.9)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-slate (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-tactile (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-time-machine (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-titles-from-headings (0.5.3)
+      jekyll (>= 3.3, < 5.0)
+    jekyll-watch (2.2.1)
+      listen (~> 3.0)
+    jemoji (0.13.0)
+      gemoji (>= 3, < 5)
+      html-pipeline (~> 2.2)
+      jekyll (>= 3.0, < 5.0)
+    json (2.13.2)
+    kramdown (2.4.0)
+      rexml
+    kramdown-parser-gfm (1.1.0)
+      kramdown (~> 2.0)
+    liquid (4.0.4)
+    listen (3.9.0)
+      rb-fsevent (~> 0.10, >= 0.10.3)
+      rb-inotify (~> 0.9, >= 0.9.10)
+    logger (1.6.6)
+    mercenary (0.3.6)
+    minima (2.5.1)
+      jekyll (>= 3.5, < 5.0)
+      jekyll-feed (~> 0.9)
+      jekyll-seo-tag (~> 2.1)
+    minitest (5.25.5)
+    net-http (0.6.0)
+      uri
+    nokogiri (1.18.9-aarch64-linux-gnu)
+      racc (~> 1.4)
+    nokogiri (1.18.9-aarch64-linux-musl)
+      racc (~> 1.4)
+    nokogiri (1.18.9-arm-linux-gnu)
+      racc (~> 1.4)
+    nokogiri (1.18.9-arm-linux-musl)
+      racc (~> 1.4)
+    nokogiri (1.18.9-arm64-darwin)
+      racc (~> 1.4)
+    nokogiri (1.18.9-x86_64-darwin)
+      racc (~> 1.4)
+    nokogiri (1.18.9-x86_64-linux-gnu)
+      racc (~> 1.4)
+    nokogiri (1.18.9-x86_64-linux-musl)
+      racc (~> 1.4)
+    octokit (4.25.1)
+      faraday (>= 1, < 3)
+      sawyer (~> 0.9)
+    pathutil (0.16.2)
+      forwardable-extended (~> 2.6)
+    public_suffix (5.1.1)
+    racc (1.8.1)
+    rb-fsevent (0.11.2)
+    rb-inotify (0.11.1)
+      ffi (~> 1.0)
+    rexml (3.4.1)
+    rouge (3.30.0)
+    rubyzip (2.4.1)
+    safe_yaml (1.0.5)
+    sass (3.7.4)
+      sass-listen (~> 4.0.0)
+    sass-listen (4.0.0)
+      rb-fsevent (~> 0.9, >= 0.9.4)
+      rb-inotify (~> 0.9, >= 0.9.7)
+    sawyer (0.9.2)
+      addressable (>= 2.3.5)
+      faraday (>= 0.17.3, < 3)
+    securerandom (0.4.1)
+    simpleidn (0.2.3)
+    terminal-table (1.8.0)
+      unicode-display_width (~> 1.1, >= 1.1.1)
+    typhoeus (1.4.1)
+      ethon (>= 0.9.0)
+    tzinfo (2.0.6)
+      concurrent-ruby (~> 1.0)
+    unicode-display_width (1.8.0)
+    uri (1.0.3)
+    webrick (1.9.1)
+
+PLATFORMS
+  aarch64-linux-gnu
+  aarch64-linux-musl
+  arm-linux-gnu
+  arm-linux-musl
+  arm64-darwin
+  x86_64-darwin
+  x86_64-linux-gnu
+  x86_64-linux-musl
+
+DEPENDENCIES
+  github-pages
+  jekyll (~> 3.9.3)
+  jekyll-remote-theme
+  jekyll-seo-tag
+  webrick (~> 1.7)
+
+BUNDLED WITH
+   2.7.1

website/README.md

@@ -0,0 +1,726 @@
+---
+layout: default
+---
+
+# FHIRFLARE IG Toolkit
+
+![FHIRFLARE Logo](static/FHIRFLARE.png)
+
+## Overview
+
+The FHIRFLARE IG Toolkit is a Flask-based web application designed to streamline the management, processing, validation, and deployment of FHIR Implementation Guides (IGs) and test data. It offers a user-friendly interface for importing IG packages, extracting metadata, validating FHIR resources or bundles, pushing IGs to FHIR servers, converting FHIR resources to FHIR Shorthand (FSH), uploading complex test data sets with dependency management, and retrieving/splitting FHIR bundles. The toolkit includes live consoles for real-time feedback, making it an essential tool for FHIR developers and implementers.
+
+The application can run in two modes:
+
+* **Standalone:** Includes a Dockerized Flask frontend, SQLite database, and an embedded HAPI FHIR server for local validation and interaction.
+* **Lite:** Includes only the Dockerized Flask frontend and SQLite database, excluding the local HAPI FHIR server. Requires connection to external FHIR servers for certain features.
+
+## Installation Modes (Lite vs. Standalone)
+
+This toolkit offers two primary installation modes to suit different needs:
+
+* **Standalone Version:**
+    * Includes the full FHIRFLARE Toolkit application **and** an embedded HAPI FHIR server running locally within the Docker environment.
+    * Allows for local FHIR resource validation using HAPI FHIR's capabilities.
+    * Enables the "Use Local HAPI" option in the FHIR API Explorer and FHIR UI Operations pages, proxying requests to the internal HAPI server (`http://localhost:8080/fhir`).
+    * Requires Git and Maven during the initial build process (via the `.bat` script or manual steps) to prepare the HAPI FHIR server.
+    * Ideal for users who want a self-contained environment for development and testing or who don't have readily available external FHIR servers.
+
+* **Lite Version:**
+    * Includes the FHIRFLARE Toolkit application **without** the embedded HAPI FHIR server.
+    * Requires users to provide URLs for external FHIR servers when using features like the FHIR API Explorer and FHIR UI Operations pages. The "Use Local HAPI" option will be disabled in the UI.
+    * Resource validation relies solely on local checks against downloaded StructureDefinitions, which may be less comprehensive than HAPI FHIR's validation (e.g., for terminology bindings or complex invariants).
+    * **Does not require Git or Maven** for setup if using the `.bat` script or running the pre-built Docker image.
+    * Ideal for users who primarily want to use the IG management, processing, and FSH conversion features, or who will always connect to existing external FHIR servers.
+
+## Features
+
+* **Import IGs:** Download FHIR IG packages and dependencies from a package registry, supporting flexible version formats (e.g., `1.2.3`, `1.1.0-preview`, `current`) and dependency pulling modes (Recursive, Patch Canonical, Tree Shaking).
+* **Enhanced Package Search and Import:**
+    * Interactive page (`/search-and-import`) to search for FHIR IG packages from configured registries.
+    * Displays package details, version history, dependencies, and dependents.
+    * Utilizes a local database cache (`CachedPackage`) for faster subsequent searches.
+    * Background task to refresh the package cache from registries (`/api/refresh-cache-task`).
+    * Direct import from search results.
+* **Manage IGs:** View, process, unload, or delete downloaded IGs, with duplicate detection and resolution.
+* **Process IGs:** Extract resource types, profiles, must-support elements, examples, and profile relationships (`structuredefinition-compliesWithProfile` and `structuredefinition-imposeProfile`).
+* **Validate FHIR Resources/Bundles:** Validate single FHIR resources or bundles against selected IGs, with detailed error and warning reports (alpha feature). *Note: Lite version uses local SD checks only.*
+* **Push IGs:** Upload IG resources (and optionally dependencies) to a target FHIR server. Features include:
+    * Real-time console output.
+    * Authentication support (Bearer Token).
+    * Filtering by resource type or specific files to skip.
+    * Semantic comparison to skip uploading identical resources (override with **Force Upload** option).
+    * Correct handling of canonical resources (searching by URL/version before deciding POST/PUT).
+    * Dry run mode for simulation.
+    * Verbose logging option.
+* **Upload Test Data:** Upload complex sets of test data (individual JSON/XML files or ZIP archives) to a target FHIR server. Features include:
+    * Robust parsing of JSON and XML (using `fhir.resources` library when available).
+    * Automatic dependency analysis based on resource references within the uploaded set.
+    * Topological sorting to ensure resources are uploaded in the correct order.
+    * Cycle detection in dependencies.
+    * Choice of individual resource uploads or a single transaction bundle.
+    * **Optional Pre-Upload Validation:** Validate resources against a selected profile package before uploading.
+    * **Optional Conditional Uploads (Individual Mode):** Check resource existence (GET) and use conditional `If-Match` headers for updates (PUT) or create resources (PUT/POST). Falls back to simple PUT if unchecked.
+    * Configurable error handling (stop on first error or continue).
+    * Authentication support (Bearer Token).
+    * Streaming progress log via the UI.
+    * Handles large numbers of files using a custom form parser.
+* **Profile Relationships:** Display and validate `compliesWithProfile` and `imposeProfile` extensions in the UI (configurable).
+* **FSH Converter:** Convert FHIR JSON/XML resources to FHIR Shorthand (FSH) using GoFSH, with advanced options (Package context, Output styles, Log levels, FHIR versions, Fishing Trip, Dependencies, Indentation, Meta Profile handling, Alias File, No Alias). Includes a waiting spinner.
+* **Retrieve and Split Bundles:**
+    * Retrieve specified resource types as bundles from a FHIR server.
+    * Optionally fetch referenced resources, either individually or as full bundles for each referenced type.
+    * Split uploaded ZIP files containing bundles into individual resource JSON files.
+    * Download retrieved/split resources as a ZIP archive.
+    * Streaming progress log via the UI for retrieval operations.
+* **FHIR Interaction UIs:** Explore FHIR server capabilities and interact with resources using the "FHIR API Explorer" (simple GET/POST/PUT/DELETE) and "FHIR UI Operations" (Swagger-like interface based on CapabilityStatement). *Note: Lite version requires custom server URLs.*
+* **HAPI FHIR Configuration (Standalone Mode):**
+    * A dedicated page (`/config-hapi`) to view and edit the `application.yaml` configuration for the embedded HAPI FHIR server.
+    * Allows modification of HAPI FHIR properties directly from the UI.
+    * Option to restart the HAPI FHIR server (Tomcat) to apply changes.
+* **API Support:** RESTful API endpoints for importing, pushing, retrieving metadata, validating, uploading test data, and retrieving/splitting bundles.
+* **Live Console:** Real-time logs for push, validation, upload test data, FSH conversion, and bundle retrieval operations.
+* **Configurable Behavior:** Control validation modes, display options via `app.config`.
+* **Theming:** Supports light and dark modes.
+
+## Technology Stack
+
+* Python 3.12+, Flask 2.3.3, Flask-SQLAlchemy 3.0.5, Flask-WTF 1.2.1
+* Jinja2, Bootstrap 5.3.3, JavaScript (ES6), Lottie-Web 5.12.2
+* SQLite
+* Docker, Docker Compose, Supervisor
+* Node.js 18+ (for GoFSH/SUSHI), GoFSH, SUSHI
+* HAPI FHIR (Standalone version only)
+* Requests 2.31.0, Tarfile, Logging, Werkzeug
+* fhir.resources (optional, for robust XML parsing)
+
+## Prerequisites
+
+* **Docker:** Required for containerized deployment (both versions).
+* **Git & Maven:** Required **only** for building the **Standalone** version from source using the `.bat` script or manual steps. Not required for the Lite version build or for running pre-built Docker Hub images.
+* **Windows:** Required if using the `.bat` scripts.
+
+## Setup Instructions
+
+### Running Pre-built Images (General Users)
+
+This is the easiest way to get started without needing Git or Maven. Choose the version you need:
+
+**Lite Version (No local HAPI FHIR):**
+
+```bash
+# Pull the latest Lite image
+docker pull ghcr.io/sudo-jhare/fhirflare-ig-toolkit-lite:latest
+
+# Run the Lite version (maps port 5000 for the UI)
+# You'll need to create local directories for persistent data first:
+# mkdir instance logs static static/uploads instance/hapi-h2-data
+docker run -d \
+  -p 5000:5000 \
+  -v ./instance:/app/instance \
+  -v ./static/uploads:/app/static/uploads \
+  -v ./instance/hapi-h2-data:/app/h2-data \
+  -v ./logs:/app/logs \
+  --name fhirflare-lite \
+  ghcr.io/sudo-jhare/fhirflare-ig-toolkit-lite:latest
+Standalone Version (Includes local HAPI FHIR):
+```
+Bash
+
+```bash
+# Pull the latest Standalone image
+docker pull ghcr.io/sudo-jhare/fhirflare-ig-toolkit-standalone:latest
+
+# Run the Standalone version (maps ports 5000 and 8080)
+# You'll need to create local directories for persistent data first:
+# mkdir instance logs static static/uploads instance/hapi-h2-data
+docker run -d \
+  -p 5000:5000 \
+  -p 8080:8080 \
+  -v ./instance:/app/instance \
+  -v ./static/uploads:/app/static/uploads \
+  -v ./instance/hapi-h2-data:/app/h2-data \
+  -v ./logs:/app/logs \
+  --name fhirflare-standalone \
+  ghcr.io/sudo-jhare/fhirflare-ig-toolkit-standalone:latest
+```
+
+Building from Source (Developers)
+Using Windows .bat Scripts (Standalone Version Only):
+
+First Time Setup:
+
+Run Build and Run for first time.bat:
+
+Code snippet
+
+```bash
+cd "<project folder>"
+git clone [https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git](https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git) hapi-fhir-jpaserver
+copy .\\hapi-fhir-Setup\\target\\classes\\application.yaml .\\hapi-fhir-jpaserver\\target\\classes\\application.yaml
+mvn clean package -DskipTests=true -Pboot
+docker-compose build --no-cache
+docker-compose up -d
+```
+
+This clones the HAPI FHIR server, copies configuration, builds the project, and starts the containers.
+
+Subsequent Runs:
+
+Run Run.bat:
+
+Code snippet
+```bash
+cd "<project folder>"
+docker-compose up -d
+```
+This starts the Flask app (port 5000) and HAPI FHIR server (port 8080).
+
+Access the Application:
+
+* Flask UI: http://localhost:5000
+* HAPI FHIR server: http://localhost:8080
+* Manual Setup (Linux/MacOS/Windows):
+
+Preparation (Standalone Version Only):
+
+```bash
+cd <project folder>
+git clone [https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git](https://github.com/hapifhir/hapi-fhir-jpaserver-starter.git) hapi-fhir-jpaserver
+cp ./hapi-fhir-Setup/target/classes/application.yaml ./hapi-fhir-jpaserver/target/classes/application.yaml
+```
+
+Build:
+
+```bash
+# Build HAPI FHIR (Standalone Version Only)
+mvn clean package -DskipTests=true -Pboot
+
+# Build Docker Image (Specify APP_MODE=lite in docker-compose.yml for Lite version)
+docker-compose build --no-cache
+```
+
+Run:
+
+```bash
+docker-compose up -d
+Access the Application:
+```
+
+* Flask UI: http://localhost:5000
+* HAPI FHIR server (Standalone only): http://localhost:8080
+* Local Development (Without Docker):
+
+Clone the Repository:
+
+
+```bash
+git clone [https://github.com/Sudo-JHare/FHIRFLARE-IG-Toolkit.git](https://github.com/Sudo-JHare/FHIRFLARE-IG-Toolkit.git)
+cd FHIRFLARE-IG-Toolkit
+```
+
+Install Dependencies:
+
+
+
+
+```bash
+python -m venv venv
+source venv/bin/activate  # On Windows: venv\Scripts\activate
+pip install -r requirements.txt
+```
+
+Install Node.js, GoFSH, and SUSHI (for FSH Converter):
+
+```bash
+# Example for Debian/Ubuntu
+curl -fsSL [https://deb.nodesource.com/setup_18.x](https://deb.nodesource.com/setup_18.x) | sudo bash -
+sudo apt-get install -y nodejs
+# Install globally
+npm install -g gofsh fsh-sushi
+Set Environment Variables:
+```
+
+```bash
+export FLASK_SECRET_KEY='your-secure-secret-key'
+export API_KEY='your-api-key'
+# Optional: Set APP_MODE to 'lite' if desired
+# export APP_MODE='lite'
+```
+
+Initialize Directories:
+
+```bash
+mkdir -p instance static/uploads logs
+# Ensure write permissions if needed
+# chmod -R 777 instance static/uploads logs
+```
+
+Run the Application:
+
+```bash
+export FLASK_APP=app.py
+flask run
+```
+Access at http://localhost:5000.
+
+Usage
+Import an IG
+### Search, View Details, and Import Packages
+Navigate to **Search and Import Packages** (`/search-and-import`).
+1.  The page will load a list of available FHIR Implementation Guide packages from a local cache or by fetching from configured registries.
+    * A loading animation and progress messages are shown if fetching from registries.
+    * The timestamp of the last cache update is displayed.
+2.  Use the search bar to filter packages by name or author.
+3.  Packages are paginated for easier Browse.
+4.  For each package, you can:
+    * View its latest official and absolute versions.
+    * Click on the package name to navigate to a **detailed view** (`/package-details/<name>`) showing:
+        * Comprehensive metadata (author, FHIR version, canonical URL, description).
+        * A full list of available versions with publication dates.
+        * Declared dependencies.
+        * Other packages that depend on it (dependents).
+        * Version history (logs).
+    * Directly import a specific version using the "Import" button on the search page or the details page.
+5.  **Cache Management:**
+    * A "Clear & Refresh Cache" button is available to trigger a background task (`/api/refresh-cache-task`) that clears the local database and in-memory cache and fetches the latest package information from all configured registries. Progress is shown via a live log.
+
+* Enter a package name (e.g., hl7.fhir.au.core) and version (e.g., 1.1.0-preview).
+* Choose a dependency mode:
+* Current Recursive: Import all dependencies listed in package.json recursively.
+* Patch Canonical Versions: Import only canonical FHIR packages (e.g., hl7.fhir.r4.core).
+* Tree Shaking: Import only dependencies containing resources actually used by the main package.
+* Click Import to download the package and dependencies.
+
+Manage IGs
+Go to Manage FHIR Packages (/view-igs) to view downloaded and processed IGs.
+
+Actions:
+* Process: Extract metadata (resource types, profiles, must-support elements, examples).
+* Unload: Remove processed IG data from the database.
+* Delete: Remove package files from the filesystem.
+
+Duplicates are highlighted for resolution.
+
+View Processed IGs
+
+After processing, view IG details (/view-ig/<id>), including:
+
+* Resource types and profiles.
+* Must-support elements and examples.
+* Profile relationships (compliesWithProfile, imposeProfile) if enabled (DISPLAY_PROFILE_RELATIONSHIPS).
+
+Interactive StructureDefinition viewer (Differential, Snapshot, Must Support, Key Elements, Constraints, Terminology, Search Params).
+* Validate FHIR Resources/Bundles
+* Navigate to Validate FHIR Sample (/validate-sample).
+
+Select a package (e.g., hl7.fhir.au.core#1.1.0-preview).
+
+* Choose Single Resource or Bundle mode.
+* Paste or upload FHIR JSON/XML (e.g., a Patient resource).
+* Submit to view validation errors/warnings. Note: Alpha feature; report issues to GitHub (remove PHI).
+* Push IGs to a FHIR Server
+* Go to Push IGs (/push-igs).
+
+Select a downloaded package.
+
+* Enter the Target FHIR Server URL.
+* Configure Authentication (None, Bearer Token).
+* Choose options: Include Dependencies, Force Upload (skips comparison check), Dry Run, Verbose Log.
+* Optionally filter by Resource Types (comma-separated) or Skip Specific Files (paths within package, comma/newline separated).
+* Click Push to FHIR Server to upload resources. Canonical resources are checked before upload. Identical resources are skipped unless Force Upload is checked.
+* Monitor progress in the live console.
+* Upload Test Data
+* Navigate to Upload Test Data (/upload-test-data).
+* Enter the Target FHIR Server URL.
+* Configure Authentication (None, Bearer Token).
+* Select one or more .json, .xml files, or a single .zip file containing test resources.
+* Optionally check Validate Resources Before Upload? and select a Validation Profile Package.
+* Choose Upload Mode:
+* Individual Resources: Uploads each resource one by one in dependency order.
+* Transaction Bundle: Uploads all resources in a single transaction.
+* Optionally check Use Conditional Upload (Individual Mode Only)? to use If-Match headers for updates.
+* Choose Error Handling:
+* Stop on First Error: Halts the process if any validation or upload fails.
+* Continue on Error: Reports errors but attempts to process/upload remaining resources.
+* Click Upload and Process. The tool parses files, optionally validates, analyzes dependencies, topologically sorts resources, and uploads them according to selected options.
+* Monitor progress in the streaming log output.
+
+Convert FHIR to FSH
+* Navigate to FSH Converter (/fsh-converter).
+
+Optionally select a package for context (e.g., hl7.fhir.au.core#1.1.0-preview).
+Choose input mode:
+Upload File: Upload a FHIR JSON/XML file.
+Paste Text: Paste FHIR JSON/XML content.
+Configure options:
+Output Style: file-per-definition, group-by-fsh-type, group-by-profile, single-file.
+Log Level: error, warn, info, debug.
+FHIR Version: R4, R4B, R5, or auto-detect.
+Fishing Trip: Enable round-trip validation with SUSHI, generating a comparison report.
+Dependencies: Specify additional packages (e.g., hl7.fhir.us.core@6.1.0, one per line).
+Indent Rules: Enable context path indentation for readable FSH.
+Meta Profile: Choose only-one, first, or none for meta.profile handling.
+Alias File: Upload an FSH file with aliases (e.g., $MyAlias = http://example.org).
+No Alias: Disable automatic alias generation.
+Click Convert to FSH to generate and display FSH output, with a waiting spinner (light/dark theme) during processing.
+If Fishing Trip is enabled, view the comparison report via the "Click here for SUSHI Validation" badge button.
+Download the result as a .fsh file.
+Retrieve and Split Bundles
+Navigate to Retrieve/Split Data (/retrieve-split-data).
+
+Retrieve Bundles from Server:
+
+* Enter the FHIR Server URL (defaults to the proxy if empty).
+* Select one or more Resource Types to retrieve (e.g., Patient, Observation).
+* Optionally check Fetch Referenced Resources.
+* If checked, further optionally check Fetch Full Reference Bundles to retrieve entire bundles for each referenced type (e.g., all Patients if a Patient is referenced) instead of individual resources by ID.
+* Click Retrieve Bundles.
+* Monitor progress in the streaming log. A ZIP file containing the retrieved bundles/resources will be prepared for download.
+
+Split Uploaded Bundles:
+
+* Upload a ZIP file containing FHIR bundles (JSON format).
+* Click Split Bundles.
+* A ZIP file containing individual resources extracted from the bundles will be prepared for download.
+* Explore FHIR Operations
+* Navigate to FHIR UI Operations (/fhir-ui-operations).
+
+Toggle between local HAPI (/fhir) or a custom FHIR server.
+
+* Click Fetch Metadata to load the server’s CapabilityStatement.
+* Select a resource type (e.g., Patient, Observation) or System to view operations:
+* System operations: GET /metadata, POST /, GET /_history, GET/POST /$diff, POST /$reindex, POST /$expunge, etc.
+* Resource operations: GET Patient/:id, POST Observation/_search, etc.
+* Use Try it out to input parameters or request bodies, then Execute to view results in JSON, XML, or narrative formats.
+
+### Configure Embedded HAPI FHIR Server (Standalone Mode)
+For users running the **Standalone version**, which includes an embedded HAPI FHIR server.
+1.  Navigate to **Configure HAPI FHIR** (`/config-hapi`).
+2.  The page displays the content of the HAPI FHIR server's `application.yaml` file.
+3.  You can edit the configuration directly in the text area.
+    * *Caution: Incorrect modifications can break the HAPI FHIR server.*
+4.  Click **Save Configuration** to apply your changes to the `application.yaml` file.
+5.  Click **Restart Tomcat** to restart the HAPI FHIR server and load the new configuration. The restart process may take a few moments.
+
+API Usage
+Import IG
+Bash
+
+curl -X POST http://localhost:5000/api/import-ig \
+-H "Content-Type: application/json" \
+-H "X-API-Key: your-api-key" \
+-d '{"package_name": "hl7.fhir.au.core", "version": "1.1.0-preview", "dependency_mode": "recursive"}'
+Returns complies_with_profiles, imposed_profiles, and duplicate_packages_present info.
+
+### Refresh Package Cache (Background Task)
+```bash
+curl -X POST http://localhost:5000/api/refresh-cache-task \
+-H "X-API-Key: your-api-key"
+```
+
+Push IG
+Bash
+
+```bash
+curl -X POST http://localhost:5000/api/push-ig \
+-H "Content-Type: application/json" \
+-H "Accept: application/x-ndjson" \
+-H "X-API-Key: your-api-key" \
+-d '{
+      "package_name": "hl7.fhir.au.core",
+      "version": "1.1.0-preview",
+      "fhir_server_url": "http://localhost:8080/fhir",
+      "include_dependencies": true,
+      "force_upload": false,
+      "dry_run": false,
+      "verbose": false,
+      "auth_type": "none"
+    }'
+```
+
+Returns a streaming NDJSON response with progress and final summary.
+
+Upload Test Data
+Bash
+
+```bash
+curl -X POST http://localhost:5000/api/upload-test-data \
+-H "X-API-Key: your-api-key" \
+-H "Accept: application/x-ndjson" \
+-F "fhir_server_url=http://your-fhir-server/fhir" \
+-F "auth_type=bearerToken" \
+-F "auth_token=YOUR_TOKEN" \
+-F "upload_mode=individual" \
+-F "error_handling=continue" \
+-F "validate_before_upload=true" \
+-F "validation_package_id=hl7.fhir.r4.core#4.0.1" \
+-F "use_conditional_uploads=true" \
+-F "test_data_files=@/path/to/your/patient.json" \
+-F "test_data_files=@/path/to/your/observations.zip"
+```
+
+Returns a streaming NDJSON response with progress and final summary. Uses multipart/form-data for file uploads.
+
+Retrieve Bundles
+Bash
+
+```bash
+curl -X POST http://localhost:5000/api/retrieve-bundles \
+-H "X-API-Key: your-api-key" \
+-H "Accept: application/x-ndjson" \
+-F "fhir_server_url=http://your-fhir-server/fhir" \
+-F "resources=Patient" \
+-F "resources=Observation" \
+-F "validate_references=true" \
+-F "fetch_reference_bundles=false"
+```
+
+Returns a streaming NDJSON response with progress. The X-Zip-Path header in the final response part will contain the path to download the ZIP archive (e.g., /tmp/retrieved_bundles_datetime.zip).
+
+Split Bundles
+Bash
+
+```bash
+curl -X POST http://localhost:5000/api/split-bundles \
+-H "X-API-Key: your-api-key" \
+-H "Accept: application/x-ndjson" \
+-F "split_bundle_zip_path=@/path/to/your/bundles.zip"
+```
+
+Returns a streaming NDJSON response. The X-Zip-Path header in the final response part will contain the path to download the ZIP archive of split resources.
+
+Validate Resource/Bundle
+Not yet exposed via API; use the UI at /validate-sample.
+
+Configuration Options
+Located in app.py:
+
+* VALIDATE_IMPOSED_PROFILES: (Default: True) Validates resources against imposed profiles during push.
+* DISPLAY_PROFILE_RELATIONSHIPS: (Default: True) Shows compliesWithProfile and imposeProfile in the UI.
+* FHIR_PACKAGES_DIR: (Default: /app/instance/fhir_packages) Stores .tgz packages and metadata.
+* UPLOAD_FOLDER: (Default: /app/static/uploads) Stores GoFSH output files and FSH comparison reports.
+* SECRET_KEY: Required for CSRF protection and sessions. Set via environment variable or directly.
+* API_KEY: Required for API authentication. Set via environment variable or directly.
+* MAX_CONTENT_LENGTH: (Default: Flask default) Max size for HTTP request body (e.g., 16 * 1024 * 1024 for 16MB). Important for large uploads.
+* MAX_FORM_PARTS: (Default: Werkzeug default, often 1000) Default max number of form parts. Overridden for /api/upload-test-data by CustomFormDataParser.
+
+### Get HAPI FHIR Configuration (Standalone Mode)
+```bash
+curl -X GET http://localhost:5000/api/config \
+-H "X-API-Key: your-api-key"
+```
+Save HAPI FHIR Configuration:
+```bash
+curl -X POST http://localhost:5000/api/config \
+-H "Content-Type: application/json" \
+-H "X-API-Key: your-api-key" \
+-d '{"your_yaml_key": "your_value", ...}' # Send the full YAML content as JSON
+```
+Restart HAPI FHIR Server:
+
+```bash
+curl -X POST http://localhost:5000/api/restart-tomcat \
+-H "X-API-Key: your-api-key"
+```
+
+Testing
+The project includes a test suite covering UI, API, database, file operations, and security.
+
+Test Prerequisites:
+
+pytest: For running tests.
+pytest-mock: For mocking dependencies. Install: pip install pytest pytest-mock
+Running Tests:
+
+Bash
+
+```bash
+cd <project folder>
+pytest tests/test_app.py -v
+```
+Test Coverage:
+
+* UI Pages: Homepage, Import IG, Manage IGs, Push IGs, Validate Sample, View Processed IG, FSH Converter, Upload Test Data, Retrieve/Split Data.
+* API Endpoints: POST /api/import-ig, POST /api/push-ig, GET /get-structure, GET /get-example, POST /api/upload-test-data, POST /api/retrieve-bundles, POST /api/split-bundles.
+* Database: IG processing, unloading, viewing.
+* File Operations: Package processing, deletion, FSH output, ZIP handling.
+* Security: CSRF protection, flash messages, secret key.
+* FSH Converter: Form submission, file/text input, GoFSH execution, Fishing Trip comparison.
+* Upload Test Data: Parsing, dependency graph, sorting, upload modes, validation, conditional uploads.
+
+Development Notes
+
+Background
+
+The toolkit addresses the need for a comprehensive FHIR IG management tool, with recent enhancements for resource validation, FSH conversion with advanced GoFSH features, flexible versioning, improved IG pushing, dependency-aware test data uploading, and bundle retrieval/splitting, making it a versatile platform for FHIR developers.
+
+Technical Decisions
+
+* Flask: Lightweight and flexible for web development.
+* SQLite: Simple for development; consider PostgreSQL for production.
+* Bootstrap 5.3.3: Responsive UI with custom styling.
+* Lottie-Web: Renders themed animations for FSH conversion waiting spinner.
+* GoFSH/SUSHI: Integrated via Node.js for advanced FSH conversion and round-trip validation.
+* Docker: Ensures consistent deployment with Flask and HAPI FHIR.
+* Flexible Versioning: Supports non-standard IG versions (e.g., -preview, -ballot).
+* Live Console/Streaming: Real-time feedback for complex operations (Push, Upload Test Data, FSH, Retrieve Bundles).
+* Validation: Alpha feature with ongoing FHIRPath improvements.
+* Dependency Management: Uses topological sort for Upload Test Data feature.
+* Form Parsing: Uses custom Werkzeug parser for Upload Test Data to handle large numbers of files.
+
+Recent Updates
+
+* Enhanced package search page with caching, detailed views (dependencies, dependents, version history), and background cache refresh.
+* Upload Test Data Enhancements (April 2025):
+* Added optional Pre-Upload Validation against selected IG profiles.
+* Added optional Conditional Uploads (GET + POST/PUT w/ If-Match) for individual mode.
+* Implemented robust XML parsing using fhir.resources library (when available).
+* Fixed 413 Request Entity Too Large errors for large file counts using a custom Werkzeug FormDataParser.
+* Path: templates/upload_test_data.html, app.py, services.py, forms.py.
+* Push IG Enhancements (April 2025):
+* Added semantic comparison to skip uploading identical resources.
+* Added "Force Upload" option to bypass comparison.
+* Improved handling of canonical resources (search before PUT/POST).
+* Added filtering by specific files to skip during push.
+* More detailed summary report in stream response.
+* Path: templates/cp_push_igs.html, app.py, services.py.
+* Waiting Spinner for FSH Converter (April 2025):
+* Added a themed (light/dark) Lottie animation spinner during FSH execution.
+* Path: templates/fsh_converter.html, static/animations/, static/js/lottie-web.min.js.
+* Advanced FSH Converter (April 2025):
+* Added support for GoFSH advanced options: --fshing-trip, --dependency, --indent, --meta-profile, --alias-file, --no-alias.
+* Displays Fishing Trip comparison reports.
+* Path: templates/fsh_converter.html, app.py, services.py, forms.py.
+* (New) Retrieve and Split Data (May 2025):
+* Added UI and API for retrieving bundles from a FHIR server by resource type.
+* Added options to fetch referenced resources (individually or as full type bundles).
+* Added functionality to split uploaded ZIP files of bundles into individual resources.
+* Streaming log for retrieval and ZIP download for results.
+* Paths: templates/retrieve_split_data.html, app.py, services.py, forms.py.
+* Known Issues and Workarounds
+* Favicon 404: Clear browser cache or verify /app/static/favicon.ico.
+* CSRF Errors: Set FLASK_SECRET_KEY and ensure {{ form.hidden_tag() }} in forms.
+* Import Fails: Check package name/version and connectivity.
+* Validation Accuracy: Alpha feature; report issues to GitHub (remove PHI).
+* Package Parsing: Non-standard .tgz filenames may parse incorrectly. Fallback uses name-only parsing.
+* Permissions: Ensure instance/ and static/uploads/ are writable.
+* GoFSH/SUSHI Errors: Check ./logs/flask_err.log for ERROR:services:GoFSH failed. Ensure valid FHIR inputs and SUSHI installation.
+* Upload Test Data XML Parsing: Relies on fhir.resources library for full validation; basic parsing used as fallback. Complex XML structures might not be fully analyzed for dependencies with basic parsing. Prefer JSON for reliable dependency analysis.
+* 413 Request Entity Too Large: Primarily handled by CustomFormDataParser for /api/upload-test-data. Check the parser's max_form_parts limit if still occurring. MAX_CONTENT_LENGTH in app.py controls overall size. Reverse proxy limits (client_max_body_size in Nginx) might also apply.
+
+
+Future Improvements
+
+* Upload Test Data: Improve XML parsing further (direct XML->fhir.resource object if possible), add visual progress bar, add upload order preview, implement transaction bundle size splitting, add 'Clear Target Server' option (with confirmation).
+* Validation: Enhance FHIRPath for complex constraints; add API endpoint.
+* Sorting: Sort IG versions in /view-igs (e.g., ascending).
+* Duplicate Resolution: Options to keep latest version or merge resources.
+* Production Database: Support PostgreSQL.
+* Error Reporting: Detailed validation error paths in the UI.
+* FSH Enhancements: Add API endpoint for FSH conversion; support inline instance construction.
+* FHIR Operations: Add complex parameter support (e.g., /$diff with left/right).
+* Retrieve/Split Data: Add option to filter resources during retrieval (e.g., by date, specific IDs).
+
+Completed Items
+
+* Testing suite with basic coverage.
+* API endpoints for POST /api/import-ig and POST /api/push-ig.
+* Flexible versioning (-preview, -ballot).
+* CSRF fixes for forms.
+* Resource validation UI (alpha).
+* FSH Converter with advanced GoFSH features and waiting spinner.
+* Push IG enhancements (force upload, semantic comparison, canonical handling, skip files).
+* Upload Test Data feature with dependency sorting, multiple upload modes, pre-upload validation, conditional uploads, robust XML parsing, and fix for large file counts.
+* Retrieve and Split Data functionality with reference fetching and ZIP download.
+* Far-Distant Improvements
+* Cache Service: Use Redis for IG metadata caching.
+* Database Optimization: Composite index on ProcessedIg.package_name and ProcessedIg.version.
+
+
+Directory Structure
+```bash
+FHIRFLARE-IG-Toolkit/
+├── app.py                              # Main Flask application
+├── Build and Run for first time.bat    # Windows script for first-time Docker setup
+├── docker-compose.yml                  # Docker Compose configuration
+├── Dockerfile                          # Docker configuration
+├── forms.py                            # Form definitions
+├── LICENSE.md                          # Apache 2.0 License
+├── README.md                           # Project documentation
+├── requirements.txt                    # Python dependencies
+├── Run.bat                             # Windows script for running Docker
+├── services.py                         # Logic for IG import, processing, validation, pushing, FSH conversion, test data upload, retrieve/split
+├── supervisord.conf                    # Supervisor configuration
+├── hapi-fhir-Setup/
+│   ├── README.md                       # HAPI FHIR setup instructions
+│   └── target/
+│       └── classes/
+│           └── application.yaml        # HAPI FHIR configuration
+├── instance/
+│   ├── fhir_ig.db                      # SQLite database
+│   ├── fhir_ig.db.old                  # Database backup
+│   └── fhir_packages/                  # Stored IG packages and metadata
+│       ├── ... (example packages) ...
+├── logs/
+│   ├── flask.log                       # Flask application logs
+│   ├── flask_err.log                   # Flask error logs
+│   ├── supervisord.log                 # Supervisor logs
+│   ├── supervisord.pid                 # Supervisor PID file
+│   ├── tomcat.log                      # Tomcat logs for HAPI FHIR
+│   └── tomcat_err.log                  # Tomcat error logs
+├── static/
+│   ├── animations/
+│   │   ├── loading-dark.json           # Dark theme spinner animation
+│   │   └── loading-light.json          # Light theme spinner animation
+│   ├── favicon.ico                     # Application favicon
+│   ├── FHIRFLARE.png                   # Application logo
+│   ├── js/
+│   │   └── lottie-web.min.js           # Lottie library for spinner
+│   └── uploads/
+│       ├── output.fsh                  # Generated FSH output (temp location)
+│       └── fsh_output/                 # GoFSH output directory
+│           ├── ... (example GoFSH output) ...
+├── templates/
+│   ├── base.html                       # Base template
+│   ├── cp_downloaded_igs.html          # UI for managing IGs
+│   ├── cp_push_igs.html                # UI for pushing IGs
+│   ├── cp_view_processed_ig.html       # UI for viewing processed IGs
+│   ├── fhir_ui.html                    # UI for FHIR API explorer
+│   ├── fhir_ui_operations.html         # UI for FHIR server operations
+│   ├── fsh_converter.html              # UI for FSH conversion
+│   ├── import_ig.html                  # UI for importing IGs
+│   ├── index.html                      # Homepage
+│   ├── retrieve_split_data.html        # UI for Retrieve and Split Data
+│   ├── upload_test_data.html           # UI for Uploading Test Data
+│   ├── validate_sample.html            # UI for validating resources/bundles
+│   ├── config_hapi.html                # UI for HAPI FHIR Configuration
+│   └── _form_helpers.html              # Form helper macros
+├── tests/
+│   └── test_app.py                     # Test suite
+└── hapi-fhir-jpaserver/                # HAPI FHIR server resources (if Standalone)
+```
+
+Contributing
+
+1. Fork the repository.
+1. Create a feature branch (git checkout -b feature/your-feature).
+1. Commit changes (git commit -m "Add your feature").
+1. Push to your branch (git push origin feature/your-feature).
+1. Open a Pull Request.
+1. Ensure code follows PEP 8 and includes tests in tests/test_app.py.
+
+Troubleshooting
+
+* Favicon 404: Clear browser cache or verify /app/static/favicon.ico: docker exec -it <container_name> curl http://localhost:5000/static/favicon.ico
+* CSRF Errors: Set FLASK_SECRET_KEY and ensure {{ form.hidden_tag() }} in forms.
+* Import Fails: Check package name/version and connectivity.
+* Validation Accuracy: Alpha feature; report issues to GitHub (remove PHI).
+* Package Parsing: Non-standard .tgz filenames may parse incorrectly. Fallback uses name-only parsing.
+* Permissions: Ensure instance/ and static/uploads/ are writable: chmod -R 777 instance static/uploads logs
+* GoFSH/SUSHI Errors: Check ./logs/flask_err.log for ERROR:services:GoFSH failed. Ensure valid FHIR inputs and SUSHI installation: docker exec -it <container_name> sushi --version
+* 413 Request Entity Too Large: Increase MAX_CONTENT_LENGTH and MAX_FORM_PARTS in app.py. If using a reverse proxy (e.g., Nginx), increase its client_max_body_size setting as well. Ensure the application/container is fully restarted/rebuilt.
+
+License
+
+Licensed under the Apache 2.0 License. See LICENSE.md for details.